AMCG00004244


Basic Information

Item Value
gene id AMCG00004244
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 39873061 ~ 39881929 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004244
ATGCAGTTATTAGAAGGACCGTATCGTGACGAAGCCCCTCCCCTGGGGGATTCCCGGGGCTCGGCGGGAGGCAGGCCGGCGCGCTGGGTCCTCCTCCGGGGACTCGGGCGCAGCGACGCCAGTGCGGATGCTGGACACCAACGACAGATCGCCTGTGATCAGGGAAGAGAGAGGAGCTCAGATCATTGCTACACCATGGCCAACACCGGGGATGAAAGGAAAAAAGCGGAGGAACTGTCTGAGGACAACCAGTACGACTCCGGGTTTGGGATCGATTCGTTCAAATCCATCAACCAGTCCATCAACCAGGACGATCAAATGCTTAAGAAAAACCCACTGCAGGAACCGAGCAGcgaaaataaaaaggacaagTTGGACACGGCAGTGGAGGAGAGATTGGACTCCTCTTACGGGTCTTCCTCGCTCACGGTTGACAGTATTGGCGAAATATTACAAAGTTGCAGCATTTCGGTGCCCAGCGATTCAGAAGCCGAACAGGAATTATACATCTTGAGCTTCATCACTGATGACGGGGACACGATTTTACACCTTGCAGTAATCCATGAAGAGGAGGAATTTGCACACCAGTTAATATCTATGTTTACCAAAGATGTCCTTGACATACAGAATGATCTGTACCAGACTCCTTTGCATCTGGCCACATATCTGAACCTGCCTTCAGTGGTGCGGGCACTGGTGCAGAAAAAGGCCAGCCTGGAGCTGCAAGACCAGGATGGCAACACACCTCTCCATGTGGCTTGTGACCAAGGGCGACTGGATTGTGCTATTGAGATGATCAGAGACCTCCCAGAAAGGCAGCTGAGCGCTATCGTAGAGATACAGAACTGGAGGGCCACACTCCGGAGAAACCATCGGATCATGAAGCTCCTGCTGAAGAAAGGTCCCAATATTAATACTCAGGAGGGCACGAGTGGAAAGACGCCGTTGCATCTGGCTGTCGAGCTCCACGACGTTGGCTTGGTGACACTGCTGCTGAACAAGGGAGCCAATGTGGACGCAGCCATGTACAACGGCTGCACCGCTCTGCATCTGGCGGTGGGGAGGCAAGACGCTGCGATAGCTAACTTACTGTGTCAGTCGGGAGCAGATAAGATGTTGAGAAACATGGAGGATGAAACTGCCTTGGACCTTGCTGATGGGAATGACGATGTAAGATGA

Function

GO: NA

KEGG:

id description
K05872 NFKBIE; NF-kappa-B inhibitor epsilon

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004244 True 1179 mRNA 0.53 6 39873061 39881929

Neighbor

gene id symbol gene type direction distance location
AMCG00004241 slc35b2,LOC106607600 coding downstream 5352 39858488 ~ 39867709 (-)
AMCG00004239 NA coding downstream 210464 39657951 ~ 39662597 (-)
AMCG00004237 LOC107552869 coding downstream 227883 39601527 ~ 39645178 (-)
AMCG00004238 NA coding downstream 295092 39564916 ~ 39577969 (-)
AMCG00004234 pak5 coding downstream 393981 39457144 ~ 39479080 (-)
AMCG00004243 NA coding upstream 24340 39906269 ~ 39911511 (-)
AMCG00004242 NA coding upstream 52388 39934317 ~ 39942767 (-)
AMCG00004247 NA coding upstream 68763 39950692 ~ 39951933 (-)
AMCG00004245 NA coding upstream 70192 39952121 ~ 39967735 (-)
AMCG00004252 NA coding upstream 198669 40080598 ~ 40100982 (-)
G6793 NA non-coding downstream 31979 39839168 ~ 39841082 (-)
G6770 NA non-coding downstream 104451 39768409 ~ 39768610 (-)
G6762 NA non-coding downstream 276422 39594941 ~ 39596639 (-)
G6668 NA non-coding downstream 946039 38926721 ~ 38927022 (-)
G6599 NA non-coding downstream 1256596 38616219 ~ 38616465 (-)
G6818 NA non-coding upstream 128482 40010411 ~ 40014259 (-)
G6822 NA non-coding upstream 133305 40015234 ~ 40034323 (-)
G6838 NA non-coding upstream 196088 40078017 ~ 40078283 (-)
G6872 NA non-coding upstream 244619 40126548 ~ 40126792 (-)
G6939 NA non-coding upstream 717025 40598954 ~ 40602815 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other downstream 23938 39841935 ~ 39849123 (-)
AMCG00004203 NA other downstream 2491108 37324010 ~ 37381953 (-)
G6441 NA other downstream 2504239 37367985 ~ 37368822 (-)
AMCG00004188 srp9,LOC107553440,LOC107601484 other downstream 3085939 36783743 ~ 36787122 (-)
AMCG00004189 NA other downstream 3093999 36769048 ~ 36779062 (-)
AMCG00004302 NA other upstream 2183060 42064989 ~ 42067664 (-)
AMCG00004313 NA other upstream 2494797 42376726 ~ 42531006 (-)
AMCG00004336 NA other upstream 3521024 43402953 ~ 43450255 (-)
G7608 NA other upstream 4638985 44520914 ~ 44522213 (-)
AMCG00004364 NA other upstream 4658234 44540163 ~ 44561575 (-)

Expression


Co-expression Network