AMCG00004248


Basic Information

Item Value
gene id AMCG00004248
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 40037711 ~ 40054452 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004248
GTAGTGGGCCAACAGCCACAGCACAGTGCACAAGACAGGACTGGGGGACTGCTGTAGATCTGCGCATAAGACAGGACTGGGGGACTGCTGTAGATCTGCTGTAGGAGGAGGCTGATGCGCgcccccccgctctctctctcttggccGTCGAGCTCGTGCCCGCTATCTGCCGGTAATTTCCATTGGAAATCAGCCGAGTCTGGAGGATCGACCCCCTGCATCAGCaggacaggaggaggaggaggaggaggaagcggATTTTTCATTCATGCATGACATTTGCAGaGAGCCGCAATCTGATGAATCCGTGCGGATAAAAGATGCATCATCATGTACTGAGCTCAAGGTGTGGAGATGCATTGATACACCGCTGCTCCAGCTGCTGTCGGAAACTCCTGGCGCTCATCCTGTGTATCCATCTGCAGCTGCACTGCTGCTCCCCTGACGTCACCGTAGACCAGCAATTCTGCATTGACCCAGGCTTCCCAGAGCACGGAAACAGGACTCCGGGTTCTGGCCTCTTCTTTGAGAATGCAGCTGCCCGTTTCTACTGCCTGGAAGGGTATCGACTCAAGGGCCCCGCAAAGGTAGTCTGCATCCGGCTTCACGACGGGTCCATGGGCTGGAAACCAAGTCATAAACCAGTGTGCCTACCTGAAGATTGTTTAGTTCCATATATCGAAGATGCTGAAATTCATAACCGTACCTACAGACCTGGAGACAAACTGATAATTAGCTGTCATGAAGGCTTCCAGATACGATACCCAGATATGGACAATATGGCCTCAATCTGCCAGGATGATGGAACATGGGACAGCTTGCCCATTTGTCAAGCTGCCACTGCTGTATATGTTTCTGTGACTGTGTGCCGCAATGATCCGGGTTTCCTCTATGCTGCAGGCTGTCTGCGTCCTGTGGTTCCTCCTCACAGTTACATGAACATCTCAGAGACCGAGTTCTCCGTGCCCGTGGGAACAGTTGTTCGCTACCATTGCTTTCCCGGCTACAAACTGGATGGGGCCGAGCTGCTGGAGTGCATGTACAACCTCATCTGGTCTGACACCCCGCCAAGGTGCCTTGATGTGGAAGTTTGTCCACTACCTCCCATGGTAGAACATGGAGATTACATGTGCCACCCCCACCCTTGTGACCGATACATCCACGGGACAGTGGTGGAGTTCTATTGTGACCCTGGCTACTCTTTAGCCAATGACTACAGGTACATCACCTGCCAGTATGGACAATGGTTTCCCCACATCCAGGTGTACTGTATTAAAGCAGAGCCTTCCTGGCCAAATTCTCCAGAGTCTCTACTGACTACCTGGAAAGTGGTGGCGTTCACTGCGACCAGTGTGCTGCTGGCGCTGCTCTTTGTCATTCTGGGGAAAGTGTTTCAGTTTAGATGCAAGACACACTTACAGCTgagAGATGGACAACAAGATTCAAGCGGACCCAATTTTATAGTGGTGGATGGCATCCCGGTGCTGTTGCCCTCCTATGATGAAGCTGTGAGCAGCACTAACATTCTGCCCCCGAGTTTTCCGCCCCCTGCTGGCCAAGGGGAATCCTCACACTCCGAAGACCAGGGACCGCCGGCCTATCCTGGCCACGTCGACAGCCTCGGTGCCGCCCAGCCTGAGGCCAGCGAGTACGAAACGTGCGAAAGCCTCACAGATTCTTTTGAGCAACTCCAGAGTATATGCCCCTCATCCACTTGCCCGGGGGGGCTGAACAACTTGTCGGAGAGAACCAACGTTATAACTTCCACAGCCGACACCGCTTCCACGAGTCCAAGCATCGACATAGCAGATGaaattCCACTGGTGGAAGAAGGAGAAGACTGTTGATCTTCCATTTTTCAAATGGCAATTCAGTGGAACCAAAACCTAAGAACATAATTCTTTATTAGTTGTCTATCGAAAGCATCAGTTTTCCAGCACTTGATCAATGTGATTGCCAtcttaataattgttttttcaaaaaaaaaattgagcaCTTGTGATACATTACTTCACCCTTCAAAGATGCTGTTTAATGGCAAACTGAAGATAAACCCCACATGGTGAAGCAGGCAAATGCATTGCCAATCCACAATAGCAATGGAAGCaacattcattcatatttaattaccATCATAAACAGAGGACATCCTGCATATATCCACTCCAGTTCCTTCtattctttttttcattatttgcttAAGGAtgtgtcat

Function

GO: NA

KEGG:

id description
K23822 SUSD4; sushi domain-containing protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004248 True 2213 mRNA 0.50 10 40037711 40054452

Neighbor

gene id symbol gene type direction distance location
AMCG00004250 NA coding upstream 7603 40021629 ~ 40030108 (+)
AMCG00004249 NA coding upstream 25336 40010525 ~ 40012375 (+)
AMCG00004246 tmem151b coding upstream 144885 39885665 ~ 39892826 (+)
AMCG00004236 hsp90ab1,hsp90bb coding upstream 191012 39839368 ~ 39846699 (+)
AMCG00004235 NA coding upstream 439457 39592943 ~ 39598254 (+)
AMCG00004251 disp1 coding downstream 5494 40059946 ~ 40083528 (+)
AMCG00004254 aida coding downstream 130425 40184877 ~ 40194871 (+)
AMCG00004256 NA coding downstream 166072 40220524 ~ 40228831 (+)
AMCG00004255 NA coding downstream 181076 40235528 ~ 40248464 (+)
AMCG00004265 NA coding downstream 516508 40570960 ~ 40598834 (+)
G6819 NA non-coding upstream 3388 40015267 ~ 40034323 (+)
G6807 NA non-coding upstream 92656 39944500 ~ 39945055 (+)
G6771 NA non-coding upstream 267013 39770465 ~ 39770698 (+)
G6769 NA non-coding upstream 269104 39768384 ~ 39768607 (+)
G6684 NA non-coding upstream 889417 39122547 ~ 39148294 (+)
G6840 NA non-coding downstream 34156 40088608 ~ 40088914 (+)
G6847 NA non-coding downstream 55748 40110200 ~ 40113951 (+)
G6850 NA non-coding downstream 94510 40148962 ~ 40198962 (+)
G7048 NA non-coding downstream 923547 40977999 ~ 40978319 (+)
G7078 LOC103376870 non-coding downstream 1240846 41295298 ~ 41364066 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 2189991 37832623 ~ 37847720 (+)
G6369 NA other upstream 3037553 36999357 ~ 37000158 (+)
G6328 NA other upstream 3145965 36861547 ~ 36891746 (+)
G6314 NA other upstream 3263188 36774001 ~ 36774523 (+)
AMCG00004179 ptrhd1,LOC103399259 other upstream 3339826 36687630 ~ 36697885 (+)
AMCG00004257 dusp10,LOC106607590 other downstream 271958 40326410 ~ 40341235 (+)
G7094 NA other downstream 1405124 41459576 ~ 41507231 (+)
AMCG00004304 NA other downstream 2155978 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 2634327 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 4563733 44618185 ~ 44640732 (+)

Expression


Co-expression Network