AMCG00004252


Basic Information

Item Value
gene id AMCG00004252
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 40080598 ~ 40100982 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004252
ATGAGTCGCCCTGCAAGACCTTTCAGATTCCCCAAAAGTTATGCGGCGCTGATAGCGGACTGGCCGGTCGTAGTGCTCGGCGTGTGCACTGTGCTCATCGTGATCTGTGCACTGGTGGGTATCTTGGTGCCCGACCTGCCAGACTTTTCAGATCCCTTGCTGGGCTTTGAACCAAGAGGGACAGCAATTGGTCAGCGACTGGTCACATGGAACAACATGGTCAAGAATACAGGGTACAAAGCAACCCTCGCAAACTACCCCTTCAAGTATGCAGACGAGCAGGCGAAAAGCCATCAAGAAGATAGGTGGTCAGATGATCACTATGAAAGAGATAAAAGGCAAGCAGAATGGGATTTCAGTAAGGACAGCTTCTTCTGTGATGTACCCGGTGACCAGTATTCCAGACTGGTGTTTACCTCGGCGGAAGGAAAGAATCTGTGGAGTATACAAGCAATTAAATCAATGTGCAATCTAGATAATGCACGGGTTCGATCACACCCAGAGTACTTGGGTTTGTGCCAGCGCACCTCTGATGAATCTTGCTGTCCAAGCTGGACCCTGGGGAACTACATTGCTATTTTAAACAATAGATCTTCGTGTCAGAAAATAACAGAACGTGATGTTTCCCATACCCTAAAAATACTCAGATCGTGTGCCAAATACTACCACAATGGCACACTGGGACCAGATTGCTGGGATATGACTGCAAGGAGAAAAGACCAGCTGAAGTGTTCAAACGTTCCAAGGAAATGCACAAAATACAACGCTGTTTATCAGATCCTTCACTTTCTAGTGGACAAAGACTTTTTGAGTCCAAAGACCGCAGATTATGTGATGCCAGCTTTAAAATACAGCATGCTGTTCTCCCCAACTGAAACGGGGAAAAGCATGATGAACATCTACCTTGACAATTTTGAAAACTGGAACTGCTCTGATGGCATCACGACCATCACTGGCATTGAGTTTGGCATCAAACATAATTTGTTCCAAGACTACCTTTTAACGGATACCGTGTATCCTGCCATTGCCATTGTGATTGTTCTTTTagtcatgtgtgtgtataccaAGTCCATCTTCATCACCCTGATGACAATGTTCGCAATTATAAGCTCCTTGATTGTCTCCTACTTCCTGTATCGCATAGTGTTTAACTTTGAGTTTTTCCCATTTATGAACCTCACTGCGCTTATCATCCTTGTTGGTATTGGAGCGGATGATGCTTTTGTCCTGTGCAATGTCTGGAATTACACCAAATTTGACAAGCCCAACTCAGAGTTGTCCTATACAGTGGGTATCACCTTGCAACATGCTGCGCTCTCTATGTTCGTCACCAGCTTCACCACTGCAGCTGCCTTCTATGCCAATTATGTCAGTAACATCACAGCAATCCGGTGTTTTGGTGTGTATGCCGGTACTGCCATTTTagtgaattacattttgatgGTGACATGGTTGCCCGCAGTTGTCGTGTTGCATGAACGTTACTTGTtgaatatttttacttatttcaaGACTCCCCAGCAGCGGGTTTACAACGCCAAAAGCTTCTGGACGATGTTGTGCCAAAAGATTAATAGGTTTCTGTTTAGAGTCTCAGAAGCCTCTAGGATTTTCTTTGAGAAAGTTCTCCCTTGCATTGTGATCAAGTTCCGTTACATCTGGCTGTTTTGGTTCCTTGCCTTCACAGTGGGAGGAGCTTATATCGTGTGTGTGAACCCCAAAATGAAACTGCCTTCTCTCGAGCTGTCAGAGTTCCAGGTCTTCAGGTCATCCCACCCCTTTGAGCGCTATGATGCTGAATTCAAGAAGCTTTTCATGTTTGAGAGAGTCCATCATGGAGAAGAACTACACATGCCCATAACCATAATCTGGGGTATCATTCCAGAAGACAATGGCGATCCCCTTAATCCCAAAAACAAAGGAGAGCTAAGACTGGACAGTAGTTTTAATATGGCCAGTCCAGCTTCACAGCtttggattttaaatttttGCCAGAAACTCAGAAACCAGAGTTTCTTCTACCAAACAGACGAACAGGATTTCACCAGCTGTTTCATTGAGACATTTAAACAGTGGATGGAAAATCAAGACTGTGACGAGGCCACAGTGTATCCGTGTTGCAGTCAGTCCACATTCCCCTACAAGCAGGAGGTCTTTGAACTTTGCATAAAGAGAGCGATCATGGAGCTTGATAGAAGCACCGTGTACCATTTAGATAAGGAGACCCCAGGGCCCAGGTTTGATATCAATGACACAATCAGAGCTGTTGTTCTGGAGTTTCAGAGCACTTACCTTTTCACTCTAGCTTACGAGAAGATGCACCAGTTCTACAGGGAAGTAGACAACTGGATCAAAGACGAACTAAAGAGCGCCCCCGCGGGCCTCAGCTATGGGTGGTTTGTGAGCAACCTGGAGTTCTACGACTTGCAGGACAGCTTGTCAGATGGGACGCTGATTGCTATGGGGCTGTCTGTGGCCGTGGCATTCAGTGTGATGCTGCTTACTACATGGAATATTATAATAAGTCTTTATGCCATTATATCCATTGCGGGAACCATATTTGTCACTGTAGGCTCTTTAGTGCTCCTTGGATGGGAGCTGAATGTATTGGAGTCAGTCACCATTTCTGTTGCAGTAGGACTGTCGGTGGACTTTGCTGTTCATTACGGAGTGGCTTACCGCCTTGCGCCCGAACCAGACCGAGAGGGCAAGGTGGTTTTCTCCCTGAGCCGCATGGGCTCCGCTATTGCAATGGCTGCCCTGACAACATTCGTGGCTGGAGCCATGATGATGCCCTCCACTGTCCTGGCCTACACTCAGCTCGGCACCTTCATGATGCTCATCATGTGCATCAGCTGGGCTTTCGCCACCTTCTTTTTCCAGTGCATGTGCAGATGTCTGGGACCCCAAGGCACCTGTGGGCAGATCCCCCTGCCCAAAAGACTGCAGTGTCAGGCATTTTCCCAAGGGTCCACCACAGCTCCTGCCACCAGAAGCCAGAGTAAGTTGTGCCACACGAGTAAGTATCAGCTGGACGCTAGAGGGGCCGAGGTGGAGCACGAGCACTATGAGCTCGAGCCTCTGGCCTCTGACAGCGGCGCTGTGGAGAAGGCAGCGTTGGAGGAAAAGCAGATGTGCTCCCGACTCTACAATGGCAGACCCCCTCAGAACTGCATCCACACACCCTGTAACACAGCGGAGCCAGATAACAGTGTGCCCCCTGAGAAGGGACTCCGGACTCCGTTGGAAACACCGCATTCGTGCCAGTACCCTACccataataaaaactgcaagTGTGGTGATCCACCCCAGTCCTTAGGACTGCAGTGGATCCCTCCTTCTTGCTCACAGGTTGGAGACAATTTCTGTACCCAGTGTGTGTCCTCAGCTGTAAATTTGTCAAAAGCAAAGAATCCGTCACCCACGCTTGACACGGCACACTCTCCCACCGAGTGCCGCATGCATTATGTTCACCACGCCCACCCGCACTACCACTCCTGCTCACAAGGGAAAGCAAAGCCTCACACAGCTCATACTTGCCTCCTCAGAAATTACTGTGTGCATTCGGTTCATCAACTTcaccaacagcagcagcagcagcaacatgAACACCAAGGACCTGTAGAAAATCAATGCCCTAGCTGTGCAGAGAAGCACCAGAGAACATTTCCCAGGAACAGCAGCCCAGTTGGTGATCTGAGTGTGGACTCTACAGCAAAGGCACCGCCAGGCACAGATACTGCACAGAGCAGTGAAACACAAACTCGGAAACCACAAGAGAGTCATGCAGACAACCTGGACAGAGACCAAAGCACTGGTCAAAACACAGAGAACCAGGAATcagagcaaaataaaaccagGGAAAAGGCATCTGGTGGCCAGGAAGAGCCAGACACTACATATATCATCCAAAAGGATAGTGTTACAAAGGGAGATCAGAACAGTCTTCAATCTAAAGACAAGGCATCCCCAGTCACAAGTGAAAAACGACACTATTTTGACAGAACTTTAAAAGTTAAGTGCAATTCTGTTGACTTTTTAATGCCAAAGGCTGAAGCCAATGTGCCTGCTCTCTCAATAAATTCACAACCTTCTACTGAAAGCTTAtgttaatataaacaaaagtaattatatgaataaaaacatcatATTGTTATTCAGTTCAATTTCCCTTTTCAATGAATGTTGGGCATTTCACAGACACCAGTTCATTATCTTATTTTCACAAGTAactttgtacaatgtatttttaatgagaacTTGTTTCCCCAAACATTTGTAGCAGATGCCAGCTGGTCTGTATACTTTGCTGAcgtctttaaaaaaaagggaTTCTTAGAGAACTAgacttcattttaataaaaggcTGAAATTATATGTTGCTTATGCAATTGAAAATCAGATTTAGTGACCCAATGCTTGATTGTCTACAGGGGGCAGACATAACCATCATAAAacaatgaatttaaaaagaataaatgcCCCCCAGGAATCAAATGCTTCCTTGCAGtctagaaaatgtaaattgtggAAATTGTTCTTCGGTCATCTCAAAAATGGTAAACTTGGGGATTGTACCTCATTCTATGCCAATCATGAATATGCAATTAAGATGTCATAACATTATCCCCCTAATTTGATAtttgtatacacatatatacaccaaATGTGTGATCTTTGAGAGAATACATTTCTCCTCCAAAACCttcaaaacttgaatgtgaGCAGACctgaaaaagcatttaatttttttcaattcaCTTTGGATTTACATCCATCTGCTAAAACATGAATTAGTTTTAAAGATTCTGTATCCTTTGTTCCACATTTTGTGCTTCACTAGGCCAATGGCTATAATAATATCAGCAATgttgtccctgcagatctggtgAAACTCAGAATTTGTGGCTAATTGGAGGCCTTGAAAAGTTTCCTCATGGTTCATAGTGACAGTTTGAATTTCTGTTCTAAAGTCTCTTGACACTTTGCAACCATCCTAATGTATTTTACTGACAGAACTGCTCAGCTAAGTTCTCAGTGAAAATATACGTGATTTTTAAAAGTTTCTCATTGGATTTGATCATTTTAGAACTCTGTTTTATATGAGCCTTTCGGTTGAAATGCTAGTTTGCCTATTTTGTTCTAGTCCTTTGAagaatatagtttgtttttcctcttcctAACACCTTTGTattgaagcattttaatttagtctACCTGCAGTGTTCCTAAACATGGACAAGTCTGAAATGCCCAAATGTGAATTAGGCCTTCCCCAGGTGTTCAGTGCAGGTGCTGATGCTAGGATTGGATTGTGGATAATGCTATTGGAAAGCTTTCATGTCAGCTACTTTAGAAATGAAGTCTAGTTTTCCCcatgctgtttcttttttattttctggagaAAGGGAATCCATAAACATGAATTTTGAATGTTCTTaagttatatatacagtatgtataaaaaaacaagcaaaatcaCAGGCATAATTTCCAGAATGAAAGGTTCAGTATGAAAAAGGCTGTAATAAAATTAACTATGAC

Function

GO: NA

KEGG:

id description
K24680 DISP1; protein dispatched 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004252 True 5544 mRNA 0.44 7 40080598 40100982

Neighbor

gene id symbol gene type direction distance location
AMCG00004245 NA coding downstream 112863 39952121 ~ 39967735 (-)
AMCG00004247 NA coding downstream 128665 39950692 ~ 39951933 (-)
AMCG00004242 NA coding downstream 137831 39934317 ~ 39942767 (-)
AMCG00004243 NA coding downstream 169087 39906269 ~ 39911511 (-)
AMCG00004244 NA coding downstream 198669 39873061 ~ 39881929 (-)
AMCG00004253 NA coding upstream 1757 40102739 ~ 40164334 (-)
AMCG00004260 NA coding upstream 67655 40168637 ~ 40173475 (-)
AMCG00004258 LOC106512272,LOC104967796 coding upstream 73590 40174572 ~ 40184290 (-)
AMCG00004259 NA coding upstream 96520 40197502 ~ 40218464 (-)
AMCG00004261 NA coding upstream 330877 40431859 ~ 40434843 (-)
G6838 NA non-coding downstream 2315 40078017 ~ 40078283 (-)
G6822 NA non-coding downstream 46275 40015234 ~ 40034323 (-)
G6818 NA non-coding downstream 66339 40010411 ~ 40014259 (-)
G6793 NA non-coding downstream 239516 39839168 ~ 39841082 (-)
G6770 NA non-coding downstream 311988 39768409 ~ 39768610 (-)
G6872 NA non-coding upstream 25566 40126548 ~ 40126792 (-)
G6939 NA non-coding upstream 497972 40598954 ~ 40602815 (-)
G6974 NA non-coding upstream 574189 40675171 ~ 40696315 (-)
G7023 NA non-coding upstream 780826 40881808 ~ 40883167 (-)
G7035 NA non-coding upstream 815467 40916449 ~ 40921474 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other downstream 231475 39841935 ~ 39849123 (-)
AMCG00004203 NA other downstream 2698645 37324010 ~ 37381953 (-)
G6441 NA other downstream 2711776 37367985 ~ 37368822 (-)
AMCG00004188 srp9,LOC107553440,LOC107601484 other downstream 3293476 36783743 ~ 36787122 (-)
AMCG00004189 NA other downstream 3301536 36769048 ~ 36779062 (-)
AMCG00004302 NA other upstream 1964007 42064989 ~ 42067664 (-)
AMCG00004313 NA other upstream 2275744 42376726 ~ 42531006 (-)
AMCG00004336 NA other upstream 3301971 43402953 ~ 43450255 (-)
G7608 NA other upstream 4419932 44520914 ~ 44522213 (-)
AMCG00004364 NA other upstream 4439181 44540163 ~ 44561575 (-)

Expression


Co-expression Network