AMCG00004256


Basic Information

Item Value
gene id AMCG00004256
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 40220524 ~ 40228831 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004256
CAGACACTGCTCCGAAGCGGATATTCCTACATTTGGCGCATGCGTATTACACTACATTTGACCAGGAAGTATCTGTTGCGGCGCACACGTGGGGATAGAAGTCATGGATGATCTGAGTACCGAAGTGTTGTTAAATGGACAGCCCGATGCTACACATGAGGAGCAGTTGACCAGTGGCCTGGATGCTGAGTTTCGGCCGCCTGTGCAGTCAATATCACAGAGGTTCAAAAaaacattaCGACATGAATCAGGTTTTCACAGGACTGCAAAAAAATGTCTCTGCAAAATCCAGGAGGCTCTTCTGCAGCAACAGTGGGAGGATGCTGCAAAATATATGAAGTCTTTCTTCCAGATTTTGGAGGATCCAAGTAATCACATGGGGGTGGCATCACGTGAGaTAATTTGGAGATTGGGAACTGAAATTCTGCACCAGCTCCCTAACACCAAGCTAGAGGATTTCAATTCTTTTCtggaaagaatgaaaaatataggAGTGAGGAATTATCTGAAAATAAGTTTGGAGCATACCTTTCATTTGATGATGAATGGAATGCTTGATGATGCTAAAAGGCAGTTGTCTTTAGTGGAGAGTTGGAGGTACGGGAGCGAGTCGGCTTCTCAGGCAGAACGGAGCCAGCTCATCCAGACTTACCGCGGCTATCTCCATTACTTCACTTGGTCTGCAAAAAAGGATGCCGTGCCAGACACTGAGAAATATGATAATTCGGATGTAACTGCAAACCAGGAGATGCACACTTACTTTCGACAGGCATCAGTGAACATCCAGGACACAATAAAGCAGCCAGGAGTCTGGGACCCTTTTGTAATCAGTTACATCAATATGCTTGAATATTACAAGGATTATGATGAAGCTCTGAAAGTTTTGAATGACTATGCCTATGACAACCGTTTCCCACCCAATCCAAATGCTCATGTGTATCTGTACCAGTTCTTGAGAAAGCACCATGCGTCGAAGAAGAAACTGTTTAAAGTTCTCAGGattttgcaTGCTTTGGTGCCTAGTCATGAACTGATGCTTGAATTCTGTTCTCTTCTGCTTGAGTCAGACAATAATAGTCATGTTCAGGAAGCCTTAATAGTAGGTTTTAGCCTACTTGACTATAGCAGCTGGAAAGACAGTGTGGAAGCATGGCTTTGTTTAGGAAAAGCCATTAAAGTGGCAAAGAGAAGGAAATTATTGCAGTTCATTAATGACGAGTGGGACTCAAGAAAGGACTGGTGGCCTGCGTTTCATTTCCGATCTTACTATGCCAAGAAAGATGTAGAAAAGGATAAAGAGCTGGTGAAAAGGAAAGCTGTTGTTGCAGCTGCCCTCATTGGAAGCAGTAAGTGgacattaaatatgatttactgA

Function

GO: NA

KEGG:

id description
K15212 TAF1A, SL1; TATA box-binding protein-associated factor RNA polymerase I subunit A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004256 True 1375 mRNA 0.43 10 40220524 40228831

Neighbor

gene id symbol gene type direction distance location
AMCG00004254 aida coding upstream 25653 40184877 ~ 40194871 (+)
AMCG00004251 disp1 coding upstream 136996 40059946 ~ 40083528 (+)
AMCG00004248 NA coding upstream 166072 40037711 ~ 40054452 (+)
AMCG00004250 NA coding upstream 190416 40021629 ~ 40030108 (+)
AMCG00004249 NA coding upstream 208149 40010525 ~ 40012375 (+)
AMCG00004255 NA coding downstream 6697 40235528 ~ 40248464 (+)
AMCG00004265 NA coding downstream 342129 40570960 ~ 40598834 (+)
AMCG00004264 NA coding downstream 377623 40606454 ~ 40618190 (+)
AMCG00004266 NA coding downstream 493332 40722163 ~ 40729804 (+)
AMCG00004268 ints7 coding downstream 582555 40811386 ~ 40824981 (+)
G6850 NA non-coding upstream 21562 40148962 ~ 40198962 (+)
G6847 NA non-coding upstream 106573 40110200 ~ 40113951 (+)
G6840 NA non-coding upstream 131610 40088608 ~ 40088914 (+)
G6819 NA non-coding upstream 186201 40015267 ~ 40034323 (+)
G6807 NA non-coding upstream 275469 39944500 ~ 39945055 (+)
G7048 NA non-coding downstream 749168 40977999 ~ 40978319 (+)
G7078 LOC103376870 non-coding downstream 1066467 41295298 ~ 41364066 (+)
G7084 NA non-coding downstream 1138314 41367145 ~ 41368478 (+)
G7102 NA non-coding downstream 1294222 41523053 ~ 41529308 (+)
G7101 NA non-coding downstream 1376279 41605110 ~ 41606759 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 2372804 37832623 ~ 37847720 (+)
G6369 NA other upstream 3220366 36999357 ~ 37000158 (+)
G6328 NA other upstream 3328778 36861547 ~ 36891746 (+)
G6314 NA other upstream 3446001 36774001 ~ 36774523 (+)
AMCG00004179 ptrhd1,LOC103399259 other upstream 3522639 36687630 ~ 36697885 (+)
AMCG00004257 dusp10,LOC106607590 other downstream 97579 40326410 ~ 40341235 (+)
G7094 NA other downstream 1230745 41459576 ~ 41507231 (+)
AMCG00004304 NA other downstream 1981599 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 2459948 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 4389354 44618185 ~ 44640732 (+)

Expression


Co-expression Network