AMCG00004259


Basic Information

Item Value
gene id AMCG00004259
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 40197502 ~ 40218464 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004259
TGCGGCTCTGCTGACGTGTCGGCCCGTTGTGCGCTTGCGCGGCCAGTATCCCAGCCATAGCCTGCCATCATGGCTGCTATCGCCTTGCATCTCTATCTGCTTATTCTACTTTGTATTGTATCCGCATCCAAAAACGTCGTGGACAGGAGGTTTTCCGACTTCAAGCGATGCACCGACGACGAATGTAGCAtgtTAATGTGCCGAGGGAAAGCAGCACGGGATTTTTCTGGCCCTGATTGTCggtttttaacatttaaaaaaggagagACGATATATGTGTATTATAAGCTCTCTGGGAGGAGGACTGATATGTGGGCAGGAAGTGTTGGTAGTAGATTTGGCTATTTCCCTAAGGACCTGCTTGAAATCAATCATATTTACACTGAAAAGGAATTGGAGGTGCCAGCAGAAgaaaccgattttgtatgttttgatggCGGATTCGACAAATTTGATAATTACGATATTGATAAACTTTTGGGCGCTTCTGGATTAGTAGGAGAGAGTGATGCTTCAGGTCAAGAGACATCAGTAAAGGAGAAGGAGGCACAAAGTAGCACTGCTGAGAGCAAGGAAGGTGAACTGGAAGAAACACTTACAGTATTGTCACCTGATGAAAGTAATGATGTGAAGGAAGCCACTGGCAGTGAACCACAGCCCTTGCCTGATGAAAGCAGCGATGAAGTTTTAGACAAGGAGATCGGGAAAGAGATTGTTAATGAGGATAAAGAGTTGACTGATTTAGGAACTACAGAAACCCCTGAGCTGACTTCTGAAAAGCTGACTGAGATACCAGACACAAAGTCACAAGGAGATGATGCTCCAATTGAAGCcacaactgaaaaaataaagcatggtCTGAAAGAAGATCAGCACATAGGAACTTCAGCAGACAGTATTGCACCAGAAGAAGACCATGCCAAAGATCACACGATACAGGAAAATGAGCTTTTGTCCAAAGAGGATGTGCCTTCGATTGAAGATACAGATCAtgttgcagaagaaaaaaatgcttccAATTTGAAAACTAACCTGGGGTCCACCTTTGATGCAGTTATCTCAGATGATGAAAATACTCGGAGAGTGACCACAGTATATGATGATTTTGAGGATGAAGATGTTGTGGAAATGCAGCAGGACCACGTGGATGGGGATTTGGAAGTAACACCGTTATTATCATACAGTGAGGAAAGACCACTGCCACCAAATGAAATGCAATCTGATGAAGATGACACTTCAGAATCTGCTATAAAGGCAGACCGTCCCGAAAGTGAAGAATATGCACCTGAGGAATTTAAAGAGGAATCTGAAGGGGACACAGATGACAAAGGAACTGAAGAAGACAAAAGCATGTGGACATCACTGGGGGATACTGTCTTTGCTATTGTCAGTGGTGGAGAAAGGACAAACCAGGTTACCAGTTTAGAGGAGgatgatgaggatgaggaagacAATTTTGATAATGAAAGGATAGAAGAAATGAAGGAGTCAAATGAGGACACTGTATACCTTTTAGGCTCTGACATTAAGGAAGATCATGAGGAACGGGTGCATGTTCCAGAAGAATCTGTTGATGAACAAGACATACCTAATGACGATACAGATCATAAGCCTGATAGTGTTACAGATGGATCTTTATCTGTAGAGACCGCAAAAGAAGTAACGCCCTCTACAGATGAAggcaaattaaatacagatatgGTGGATGAAGAAAAAGCGGATTCAGATCAAGAAAAAATACTTGATCCTGAAAAGCTGTCAGAAAATTCAGACCAAACTCTTGAAGTAACAGATAAACAAGTAGGTGAGTCTGCAAATATCTCTGAAAACTCAAGGAAAGACCCAGCAAAAGAACACCAAGAAGATTTAAAAGTCCAAAGTATGGAAGGaaatcaacattttgaaaacGTTGTATCCAGTGAACATAATGCTGAGCAAAACCAAACTgttaaaggaaaagaaaatggaactcTTGAAGACGTCTCTGAAAAAGCCATGATTCCAGAGCAAGAATTGAATAAAGAATCACCAGAAACTATTAAAGGCAATGACTTGGATCAAGTAACTGAGATAAGTAATCAATCAAAATATGTAGACGCTGGCCACAAGCTTTTGGCTGAAGAAGAGTCTGACCCTGAACTAGAAGTGGACCTAGATGAGGAAGTGGTTAAACAGACCGAAAATATTAATGAGGATTTGCCTGATCCAGACCTCGAAGAGCCATCTTCCACAGAGGTAGAGGATTCAGAATATACaggagatgaggaggaggaagaagaagaattgcTTGAAGATGAAAATGCCTTAACTTCAAAAAGTGAAAATTTACATGTAGAGGCAGATGAAAAAGACCCAGATATTTTGACGGAGGTAGAGGCAGATTTGGTTGAAGAAGCCACCAAGGAAACTGCTTCTAAAGTTAAGGATCTGGAAGAACACCAGGCTGTGAATGACAGTTATGTAGAAACTAAGCAagccaaaacaaataaagatatCGAGGTGGGCATAGGAAATAACACAGATTCTGCAGATAATGTGAACGCTACTGACCCTGATGTTGGTGTTACTGTATCAGAGGAAATCCAGTTGGAAGATCTTGAATCAACAAATGTTGATGATAAACCAGACTCTTTGGCTGGACTTCCAACTGAAAATGAAGATAAAGAACATGTGAAGGAGACCAAACCTAGTAAGGAGTTGGAATACGGTGACAGCATAACACAACTTACTCTTCTCAGAGGACACTTTGATGAGAAACACATGGAGCGCTTCCAAAAATACTTGGGCTCTCGGCAAGTCCTTCAACAAATGGATGGAAGCATGTTTGACGAAGAAGCAGCAATCTTGGATGACTTCCAAGAGCTGGCTTTCCAGCTCAGACAGAAGTATTCAACAGTGAGTGACAGTGCTCCACTGGTCTCTGAGAAGCCACCTCCCGAAGAGACTCCATCTGAGCCACATTCAGATATGGCAGGTTCAGAGGTTGAGGCAGATATTGAAACACTGGCAGACAACCACACGCTGTCTAACGAGGGATCCGAACCTGACGCACAGGAGCCGTCACCGGGACCACATGAGAGCAGTGAGAAGCCTTTGCCACAAGAGTCTGCTCTGCCAAACTCACACAGTGGGGCAGATGTTGGTTTCGAGGAGGATGGAGGTCACTTCAACAGAAACAAAGATAGCCATTTCATTGAGGACATTGAAGATATTCAGAAAAGCCCTCAAGCCACTCTAGAAAGCCCCATGGATGTGGGCTTAGGTTTTAATATGGAGCACTCCCTTTCAGCTGCCCCTGAATACCCTGAGGATGAAAAGAACAATGAAATGGAAAGTGATCATTCATTCCATGGCATTACTGAAATGCTTGGCTATTTCACTCTGGCTAAAGAATATTTGGGAGCATATACTGAAATATTTGCAACCGCCAGCAAGAGTGAGATCTTCTGTTTTATAAACATGGATTTAACACGAGTCGACGCTTCGCCCTCTGCAGGGATGGACCCAGGAACTGCTTTCTACTTCTTGCTCATAAAGACAATTACAGATCTGGTTGCGACGCTGCCTGAGGAGTGGCAGCCGGGTCCAGACTTCTACGGGTGGCCATGGGAGCCAGTGGTAGTAACCGCTTTGGTGGGAGTCCTCTCATTTCTCATCATCTTCTGGAGAACGCTACTTGCAGTCAAGAGTAGGACATATCTAAAAAAACAACTTGTGGAAAAGATAAAGCAACTCATGGATGAAAAATCTGAGGCCCTTTCCAAAATATCAGACTTGAATAAACAGATTGAAGAACGTGCAGAGCaattaaaacattctgaaaaaTCCAGTTCTTCAGCAAAACGTGAGAACAAGGAACTCCAGGAAATGTATAAGGaattgcagaaaacaaatgaacagacGAAGGAGAGGGTCAGAGCATTGAATAAGTCTGTGGatgaagagaagaagaaaaaccgCCAGCAAGAACGAACGaTCTCAGAAACAAAAAAGTCTATTGACCAGTTTCAAAGCGTAATTGAAGCTAACAGAGCTGAACTGTCAAAGCTGCAAACCCTTGTAGATGAAGCCAGACTAAAGGAGGAGGCATTGAAAGCTGAAGTCCAGTCTTTCCAGAAGGAAAATACCACCTTAAAAGATCAGAAGAAAAACCTATTGAAGGATGCCAAAGGTTGGGAGGAAAAGCACAGAGAACTCTGTGAACAAATCAAAGTATTGCAGAAGTCTCAAAAGGAGTTGGAAGACACTGTTGTTCACAAAGAAAACGAAATTGAGGTTCTATCTGACTGCATTGCTGAGCTGCAACAACTTGAGGCTGAAGCCAAATATGAAACGGCTGAGTTGCAGAAGGGAGATTCCCAAAACTTGCCAAATGGTGAAATCCTGGACAAGAATGACATGATGAGGAACAGGATCAAGCAGATGATGGATGTTTCACGGGTTAGGACCACTCTTACAATAGTGCAAGAGGAACGAGACCGTTACCTTACAAAGTTGCTGTCTGAAGAGAAAGACAGGCACGAGTTGGAAGAACAGATAAAGAAACTGGAGCATGACCAGGCTTCCCTGGCCGGTGAGAAGTGCCACCTGGAGAACCAGTTCAAGACCATTCAGCAGAAGCTGGAGATAATGAATGAGATGTACCAGCAGAAAGAGAACGCGCTCCAACAGAAACTGACACAGGAGGAATTTGAGCGCCGGGAAAAGGAGCAGAAGCTCTCAGAGGTGGGTGGGAAAGCTGTTCAAGCTGAGGAAGAGCTAAAGGCTTACAAGCAAAGGATTCAGGAAGTAGAAGAGGAGCTGCAGAAAACCGAGCGCTCCTATAAAATCCAGCTTAACGCTCGTGCTTCGGAGAGAGCTCTGGTGGAGGAGAAGAGAATCACCGCTAACCTCAGGCTGAAGCTGATTGAAGTCAATGACAAAGTGACAGAACTCCAGAGACCATCCCTCATCAAACCGACCCCTGGCCGTCCAGACAGACAGATGCCTTCAGTTCGTAGAGGAGATTCCTATGGTCCGTCTCCAGTGAGTGGAGGAGCCCCGTCGCCACCTCTGATGATCGAGGGCCCGGGTCGCCCCCCATCTGCTCCTCTGGGGCGCAGAGATGCCTTTGACAGCCACCTTGGCCCGAGACGACCTCCTTCTGAAACACTGGGACGCTTCTCTGAGCTGGGACATCCTCTTTCTTCCAGGCCTGATGCTGGGGTTGGTGTACCAAGAACCTCTTCTCCTGGTGGTCTGGATGGATCGGTGAACTCAAGGTCTCAAGGCCCCCCATCGTTTCCAGGGACTCCCATCAGTTCTCCACCATCTGGTCCCACACCACCACCTTCAAAACCATTTGGGCCTCCACCGATGGCAGggcctttccctctctcccccaatGGTCCTACTCCCCCTCCCATGATGGGGCCCCTGAATGGACATCCCCCGATGCACCCGAATGCTGCTCCTCTGGGCCCTGGCCCTCGTTAtggacccccccaccccagggaCAAGGGACCCTATGGCCCCAGACCTTATGGAGCAGGACCACCTCCCAACATTCGTGGCCCACCTCCACTCAGAGACTACCCCCCTGGACCGCCACCTCCTTTTGGACAGCGGGATCTTCCCCCGGGAATGAGAGACCACCCACCCGCCCCTCACGGCCCAAGGGATTATCAGTTTCCACCCAAAAATCTGCCTCCTGGAGCCTTTCCACCGCCAGGCAGCAGAGACTATCCAGggccccctccctcccaccaCATGGGGCCCAGAGACTTTCCCACAGGGCCCCCTGTCCACCCCAGCATGGCGCATAGAGACTACCCTCCTGGCCCTGGCAGCCTGCCACTGCAGGATGTCCCCAGAGAGGAGACAGGACTGCAGAACGGGCCATGAACTGTTTCCAGTAGTGGCATGATGCCATATTCAACAAGGCAGGTTTTTTTGTTctgggattttttgttttttaattttgcagttttccatttttttgtggtaaaataaagcaattctAATACCAGTGTCTTGTCATATGATGTATGAGCttaaatgtaatcatttcaTGAAGAAAATTAAGAGGCTTGGCAGTGTGCAGGGGCCTATTGTGCAATATCACACAAttcattgtctgtgtgtgtttttctgtttttaaaattctTAGATCAACCATGttcttaaaagctttttgatgaTGCAAAGTTTCATTTAAGTTTCCTgtggaaatatttgtttaattaaatgcaaacaaaaacaataaagcagcCCCGTTTTCAGTTTTATCTCCGAGTTACATGAACGATGAACACATTGTACACTCGCCCAAAGCTGTtgctttatattaattgtaaagGTAAGTTGTGTACAAAATAAAGGTCAGATGTATAACTTATTTTACTATATTCTTAGAAAATTTATTAATAAAGATGGTAAAAGcta

Function

GO: NA

KEGG:

id description
K23704 MIA3, TANGO1; transport and golgi organization protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004259 True 6423 mRNA 0.45 28 40197502 40218464

Neighbor

gene id symbol gene type direction distance location
AMCG00004258 LOC106512272,LOC104967796 coding downstream 13212 40174572 ~ 40184290 (-)
AMCG00004260 NA coding downstream 24027 40168637 ~ 40173475 (-)
AMCG00004253 NA coding downstream 33168 40102739 ~ 40164334 (-)
AMCG00004252 NA coding downstream 96520 40080598 ~ 40100982 (-)
AMCG00004245 NA coding downstream 229767 39952121 ~ 39967735 (-)
AMCG00004261 NA coding upstream 213395 40431859 ~ 40434843 (-)
AMCG00004263 NA coding upstream 223437 40441901 ~ 40453529 (-)
AMCG00004262 slc35f6,LOC106571211 coding upstream 235126 40453590 ~ 40535830 (-)
AMCG00004273 ezr,LOC106607585 coding upstream 401466 40619930 ~ 40637476 (-)
AMCG00004269 rsph3,LOC107580271 coding upstream 433934 40652398 ~ 40660287 (-)
G6872 NA non-coding downstream 70710 40126548 ~ 40126792 (-)
G6838 NA non-coding downstream 119219 40078017 ~ 40078283 (-)
G6822 NA non-coding downstream 163179 40015234 ~ 40034323 (-)
G6818 NA non-coding downstream 183243 40010411 ~ 40014259 (-)
G6793 NA non-coding downstream 356420 39839168 ~ 39841082 (-)
G6939 NA non-coding upstream 380490 40598954 ~ 40602815 (-)
G6974 NA non-coding upstream 456707 40675171 ~ 40696315 (-)
G7023 NA non-coding upstream 663344 40881808 ~ 40883167 (-)
G7035 NA non-coding upstream 697985 40916449 ~ 40921474 (-)
G7104 NA non-coding upstream 1075712 41294176 ~ 41364065 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other downstream 348379 39841935 ~ 39849123 (-)
AMCG00004203 NA other downstream 2815549 37324010 ~ 37381953 (-)
G6441 NA other downstream 2828680 37367985 ~ 37368822 (-)
AMCG00004188 srp9,LOC107553440,LOC107601484 other downstream 3410380 36783743 ~ 36787122 (-)
AMCG00004189 NA other downstream 3418440 36769048 ~ 36779062 (-)
AMCG00004302 NA other upstream 1846525 42064989 ~ 42067664 (-)
AMCG00004313 NA other upstream 2158262 42376726 ~ 42531006 (-)
AMCG00004336 NA other upstream 3184489 43402953 ~ 43450255 (-)
G7608 NA other upstream 4302450 44520914 ~ 44522213 (-)
AMCG00004364 NA other upstream 4321699 44540163 ~ 44561575 (-)

Expression


Co-expression Network