Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00004261 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030121.1 |
| NCBI id | CM030121.1 |
| chromosome length | 57050121 |
| location | 40431859 ~ 40434843 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000976 | transcription regulatory region sequence-specific DNA binding | molecular_function |
| id | description |
|---|---|
| K09339 | HLX1; homeobox protein HLX1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00004261 | True | 1173 | mRNA | 0.55 | 4 | 40431859 | 40434843 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00004259 | NA | coding | downstream | 213395 | 40197502 ~ 40218464 (-) |
| AMCG00004258 | LOC106512272,LOC104967796 | coding | downstream | 247569 | 40174572 ~ 40184290 (-) |
| AMCG00004260 | NA | coding | downstream | 258384 | 40168637 ~ 40173475 (-) |
| AMCG00004253 | NA | coding | downstream | 267525 | 40102739 ~ 40164334 (-) |
| AMCG00004252 | NA | coding | downstream | 330877 | 40080598 ~ 40100982 (-) |
| AMCG00004263 | NA | coding | upstream | 7058 | 40441901 ~ 40453529 (-) |
| AMCG00004262 | slc35f6,LOC106571211 | coding | upstream | 18747 | 40453590 ~ 40535830 (-) |
| AMCG00004273 | ezr,LOC106607585 | coding | upstream | 185087 | 40619930 ~ 40637476 (-) |
| AMCG00004269 | rsph3,LOC107580271 | coding | upstream | 217555 | 40652398 ~ 40660287 (-) |
| AMCG00004271 | NA | coding | upstream | 231282 | 40666125 ~ 40693787 (-) |
| G6872 | NA | non-coding | downstream | 305067 | 40126548 ~ 40126792 (-) |
| G6838 | NA | non-coding | downstream | 353576 | 40078017 ~ 40078283 (-) |
| G6822 | NA | non-coding | downstream | 397536 | 40015234 ~ 40034323 (-) |
| G6818 | NA | non-coding | downstream | 417600 | 40010411 ~ 40014259 (-) |
| G6793 | NA | non-coding | downstream | 590777 | 39839168 ~ 39841082 (-) |
| G6939 | NA | non-coding | upstream | 164111 | 40598954 ~ 40602815 (-) |
| G6974 | NA | non-coding | upstream | 240328 | 40675171 ~ 40696315 (-) |
| G7023 | NA | non-coding | upstream | 446965 | 40881808 ~ 40883167 (-) |
| G7035 | NA | non-coding | upstream | 481606 | 40916449 ~ 40921474 (-) |
| G7104 | NA | non-coding | upstream | 859333 | 41294176 ~ 41364065 (-) |
| G6792 | hs90b,hsp90bb,hsp90ab1 | other | downstream | 582736 | 39841935 ~ 39849123 (-) |
| AMCG00004203 | NA | other | downstream | 3049906 | 37324010 ~ 37381953 (-) |
| G6441 | NA | other | downstream | 3063037 | 37367985 ~ 37368822 (-) |
| AMCG00004188 | srp9,LOC107553440,LOC107601484 | other | downstream | 3644737 | 36783743 ~ 36787122 (-) |
| AMCG00004189 | NA | other | downstream | 3652797 | 36769048 ~ 36779062 (-) |
| AMCG00004302 | NA | other | upstream | 1630146 | 42064989 ~ 42067664 (-) |
| AMCG00004313 | NA | other | upstream | 1941883 | 42376726 ~ 42531006 (-) |
| AMCG00004336 | NA | other | upstream | 2968110 | 43402953 ~ 43450255 (-) |
| G7608 | NA | other | upstream | 4086071 | 44520914 ~ 44522213 (-) |
| AMCG00004364 | NA | other | upstream | 4105320 | 44540163 ~ 44561575 (-) |
