AMCG00004264


Basic Information

Item Value
gene id AMCG00004264
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 40606454 ~ 40618190 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004264
CTGAACCGCACCCTGCCATGCACCTATGGGCTGGGGTAAATAAACACCACCCATCGGTTTGTTTTCGCCACAGTGTCGTGTCGATCAACAGTCGTTTAGTGTGAGCGGCTCTGCGATGTTAGGAGTATAGTTTAGTGTATTCCCGGCCTAACTAACAAGCGATCATGGGGAAGAGCTCTGATTGGTCTAAACATTATTTGGGATCCGTAGCGGTAGTTTAATTATCAGTCGTGTCATTATTTACATGGGGCTTTAAAATGTACTCACTCCTCGATTCCTCTTCAATAGGACGATCAGCTTGTCTTTGCTGCTGGACAACTTCTTGATGGTCTGTATGGAGTGGCCAAATTGCACATCCACTGAGATGCACCTTGGGCAGAAGATGCTTGATCGAGTGTTCGAATGAGAGCAGTTCTTACTCTAGGCAACCTATATATTCCACAGCCTACATCGGAGGACTTCTCATCTGTCCTGACTTCTGAAAAAACATATGCAATGTTGGAAAGCTGCCATTGACAGCACAGATATCAAACCTACGATCTGAAAGAGCATAACGACAAAACTGCAACATCATGTGCACTGGGAGTCCCCCTCCCATACAAAAAGAAGATGTATCTGAAGAATGTATCTGTACAACCAGACTGTCACTACAGAAAGGCTGTAAAACATCCTGCTTGTTTCTAATATTGTAATTGTGGGAAGACTTCTTtggtattattagtattattataaaaatgtatttttcaagaaCACTCAACACTGCTGAGGACATGGACATTAGTTTCCTCAAAGAACTGGAGCGAGAGAAAGTCTTGGAAGTGCTCCAGAGAGACAGGAGTCTGCGTACAATTGATGAGGAGAGGATAAgGAAACTCAAGCTGGAACTCCAGGAGATCCGGCGCAAGGGAGTGAAGAGTCTGTCTCGAGAGTACATGCAGAGGTCGTGCGCCCGCTGCCAGAGACCGCTGGGGAAGCTGTGGAACACAGGTGCTGTGTGCAAAGGCTGCAGCCACCGCATCTGCAGCCGGTGCAGGGTCACCACGGCCACCCGTGTGTGGAAATGCACAGTGTGCTACGCGTACGGGGAAGTAAAAATTAAATCTGGTGAATGGTTCTTGGAAGAAAGAGCGAAGAAATTCCCAGCAGACGGAGAGAAGAACGAGACGGTTGGAGAGAGATTGTTAAAATCCTGCCAGAGATTAAGAGCAGTGATGTCTAGAGGGGATGTGGAGAGAGTTCGGCCAGTGGATTTCTcacacagttttaaaaatgataTATGTATTGTCCCACCAACCCCTACTCTTGAAGTCACATCCACATTTCCAAGCAAACCAGGGGGGCTGCAAAACTCGAGAGGATTCACTAAATCAGTTGAAAACCTGTTTGTGTCGCTCACAACGCATATGAAGAAAATGTCCAAGTCTCAGAATGATGTAACTGTGGACCAGTCCCTCCTGACTGCTGATTATGGGGAGAGCACAAGGAAAGAGCGCAGAAGCCTGTCAGACCCCGCTATCAACACATCGGCAACCCTGACAAAGGCCCCCAGTCTTCCCATTCTGTACAAGAAGGTTGAATATGAGGCAGATGACAACTGTGACTCTATGGATGAATACAGATCCACCAACACGCTGTATTCAGGAGCAGAGAAGAGGGACAGCATATACAGCATCAGCAGCACATGCACTGACCCTGGCAACTACGACAATGCCAGCGTGACGGGGGAAATGGAGCTGCGAATCGTGTACGACTTCAAGAGCACCTGTTTACAAATCTCCATTAAAACCTGTAAAAACCTGGCATACGGCGACGCAAAGAGGAAAAAGTGTAACCCATACATCAAGGTCTATTTGCTTCCAGACAAGCCTCACAGCAAACAGAAGACCGCAATAAAGAAGAATACAGTGGACCCGGTGTTTAATGAGACCTTATGGTACAACATTGACCGCTCCCAGCTGGAGACCAGGACTCTGCACGCGTCGGTCTGGCACGCAGGAACACTGAAGCGCAAAGTGTTTCTGGGAGAAGTTCTCATCCCCCTGGGTGTCTGGAGATTTGATGACAGCTCCACACAGTCCTACCAGTGGTACACGCTCGGCTCCAAGCAGCCCGACAGGTATGATGAATGTATCCAGGCACAGTACAATGGGGAGCTCCTGATAAAGGCCAAGTTCACTCTGACATCACAAGAGTCCATTGTTCACACCAAGAAGGATGAAACCCTGATGGAGATGACTGGTTTTGGTCAGCTGACTATTCTTATCATTGAAGCCAAAAACCTGCCGTCTCTGAGGCCTGATGGGACAGTGAACGCATTCATCAAGGCGTGCCTCACCCTGCCCGGAGAGAGGGAGCTCAAACAGAAGACCCCTGTCCTGAAGAGGACGTCCTACCCCCAGTGGAATCATCAGATCATGTTTGGCGGGGTCTCCCAGGCCGAGGTGCTGGACGCCTGTCTGGTCCTCTCAGTCTGGGACCAGGCCCCGTTTGGCCGTTCTGACCGTTTCCTTGGAGGAGCCCAGTTAGACCGAGCTACAGCACAGATGTCATGCTCTGCAGAGCTGCCTTGGCAACAGTTACTGAGAAGGCCCAACACATGGCAAAACTTCCACTTGATCATTCATCCTAATATAAACATGATGAAAACTTAAATAGCACTTTTAAAACCACTTCTTCATCCTGTATCACACACTGATGGATGGCAAAATGTGTCACTGATTATAGGTTTCTCGGCCACAAAaatatcacacacatacattaatttgttcAGATCCATCTCTTAGTGCCATTGCAGTCAAAAGTTTTAtggatgtaattattttgactACCATTGTACATAAGGCCAACAATTGAACTCTATTTTTGctacaaactaaaaacaaaatgtactttacaATGGTCTTTGCCTGAtctttgttaaagaaaaaaagtgaagtaTATCATGTGCCAAATCCAAAATTATAGACCAGAGCCTTAAATGGGACCATTAATGGGGGGTGAAGGAGGATCAATCATTAGCCATCTAATTTTCATCTAAAGCTCTCAAAACTgcacaatttacttttttttaaatgtatatacattgtaAAGTTTGTTAGAACATTATTTGATCAAATTAGAcactattgtttgtttgtgttttccttttcatgaACAATGCCAACGTGCACAATGCTTTTCACCAGGCTGCAGTAACAGTGTATTTGAAGCACACTCTTATCTGTGCGTGTTGAAAAGTATGTTGTTATTTCCGGGCACCTGTTATCATTGCATCTTGAGAAATTGTGCATCTTGCACAACCTGTTTGCATGCTGCTCTTCTTATGGactgctttcaaattaaaatatttacattactgCAGTCATGAACTAATgtaatgcttttctgaaaacGGGGGGGAATGAAGTTACCAAAAGAGCAGAAAAGGTCAGCTTGTGTGCCTAGAGGTTGTTTAAGAGGTATGTCTAGGATGTGTGCTTTTGCAAACCTAAAATCAAAAAGCCCCTTTATCCCTGCAGGGCATGTTTTATGATGCTATATAATGCACATGGTATTGTTATTAATGGTAAATATTAAattgcacttattttttaaatgtaagcagATGCTGTATGCAG

Function

GO: NA

KEGG:

id description
K17598 SYTL; synaptotagmin-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004264 True 3617 mRNA 0.45 17 40606454 40618190

Neighbor

gene id symbol gene type direction distance location
AMCG00004265 NA coding upstream 7620 40570960 ~ 40598834 (+)
AMCG00004255 NA coding upstream 357990 40235528 ~ 40248464 (+)
AMCG00004256 NA coding upstream 377623 40220524 ~ 40228831 (+)
AMCG00004254 aida coding upstream 411583 40184877 ~ 40194871 (+)
AMCG00004251 disp1 coding upstream 522926 40059946 ~ 40083528 (+)
AMCG00004266 NA coding downstream 103973 40722163 ~ 40729804 (+)
AMCG00004268 ints7 coding downstream 193196 40811386 ~ 40824981 (+)
AMCG00004267 lpgat1,LOC106607581 coding downstream 233041 40851231 ~ 40861765 (+)
AMCG00004277 LOC107712406 coding downstream 279260 40897450 ~ 40904733 (+)
AMCG00004276 slc30a1a,slc30a1 coding downstream 288202 40906392 ~ 40921474 (+)
G6850 NA non-coding upstream 407492 40148962 ~ 40198962 (+)
G6847 NA non-coding upstream 492503 40110200 ~ 40113951 (+)
G6840 NA non-coding upstream 517540 40088608 ~ 40088914 (+)
G6819 NA non-coding upstream 572131 40015267 ~ 40034323 (+)
G6807 NA non-coding upstream 661399 39944500 ~ 39945055 (+)
G7048 NA non-coding downstream 359809 40977999 ~ 40978319 (+)
G7078 LOC103376870 non-coding downstream 677108 41295298 ~ 41364066 (+)
G7084 NA non-coding downstream 748955 41367145 ~ 41368478 (+)
G7102 NA non-coding downstream 904863 41523053 ~ 41529308 (+)
G7101 NA non-coding downstream 986920 41605110 ~ 41606759 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 265219 40326410 ~ 40341235 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 2758734 37832623 ~ 37847720 (+)
G6369 NA other upstream 3606296 36999357 ~ 37000158 (+)
G6328 NA other upstream 3714708 36861547 ~ 36891746 (+)
G6314 NA other upstream 3831931 36774001 ~ 36774523 (+)
G7094 NA other downstream 841386 41459576 ~ 41507231 (+)
AMCG00004304 NA other downstream 1592240 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 2070589 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 3999995 44618185 ~ 44640732 (+)
AMCG00004380 NA other downstream 5343820 45962010 ~ 45968306 (+)

Expression


Co-expression Network