AMCG00004267 (lpgat1,LOC106607581)


Basic Information

Item Value
gene id AMCG00004267
gene name lpgat1,LOC106607581
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 40851231 ~ 40861765 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004267
ATGTGCCAAACTGAACAGGAAACCTATTGGTCTCaccttttaattgtttctgtttttccagtAATGGAGTGGGGAGACGATGTGAAACCTATTTCAGAAGAGGAAGCCATGGTGATAGTCAACCATCAAGCCACGGGTGATGTGTGCACCCTAATGATGTGCCTACAGGACAAGGGAACGgtGGTCCAAAAGATGATGTGGCTAATGGACCACAtattcaaatacacaaattTTGGCCTAGTCTCTCTAATCCATGGAGATTTCTTTATCAGACAGGGCAAACCGCACCGGGACAAGCAGCTGATCCTGCTGAAGGACCATTTAGACAAGTACTATCACAGCCGAGACCGCAAGTGGATTGTCCTTTTCCCGGAAGGCGGCTTTCTGAGGAAACGCAGGGAAACCAGCCAGTCTTTTGCCAGGAAGAGCAACCTGCCGTACCTGACGCACGTCACACTGCCCAGGCTGGGAGCCACTCAGGTCATCCTGAAGACTCTTGGCCCTCAGCATGAGAACGGCAGCCTGGGGGCGGGCGACACCAGCAGAACAGTGAGCAAACCCCGAGGCCTCCAGTGGGTCATTGATGTCACCATCGCCTACCCCAAAGCCAGGCCAATGGACATTCAGACATGGATCTTCGGCTACAGACCGCCTACAGTGACACACGTACACTACAGGTAA

Function

symbol description
lpgat1 Predicted to enable acyltransferase activity. Predicted to be involved in phosphatidylinositol acyl-chain remodeling. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human LPGAT1 (lysophosphatidylglycerol acyltransferase 1).

NR:

description
PREDICTED: acyl-CoA:lysophosphatidylglycerol acyltransferase 1

GO: NA

KEGG:

id description
K13514 LPGAT1; lysophosphatidylglycerol acyltransferase 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004267 True 681 mRNA 0.52 4 40851231 40861765

Neighbor

gene id symbol gene type direction distance location
AMCG00004268 ints7 coding upstream 26250 40811386 ~ 40824981 (+)
AMCG00004266 NA coding upstream 121427 40722163 ~ 40729804 (+)
AMCG00004264 NA coding upstream 233041 40606454 ~ 40618190 (+)
AMCG00004265 NA coding upstream 252397 40570960 ~ 40598834 (+)
AMCG00004255 NA coding upstream 602767 40235528 ~ 40248464 (+)
AMCG00004277 LOC107712406 coding downstream 35685 40897450 ~ 40904733 (+)
AMCG00004276 slc30a1a,slc30a1 coding downstream 44627 40906392 ~ 40921474 (+)
AMCG00004278 NA coding downstream 76820 40938585 ~ 40940764 (+)
AMCG00004280 LOC105908978 coding downstream 138882 41000647 ~ 41011758 (+)
AMCG00004286 hadha,LOC102787580,LOC102203549,LOC100703423,LOC100304971,LOC106603767,LOC107594700 coding downstream 515103 41376868 ~ 41387623 (+)
G6850 NA non-coding upstream 652269 40148962 ~ 40198962 (+)
G6847 NA non-coding upstream 737280 40110200 ~ 40113951 (+)
G6840 NA non-coding upstream 762317 40088608 ~ 40088914 (+)
G6819 NA non-coding upstream 816908 40015267 ~ 40034323 (+)
G6807 NA non-coding upstream 906176 39944500 ~ 39945055 (+)
G7048 NA non-coding downstream 116234 40977999 ~ 40978319 (+)
G7078 LOC103376870 non-coding downstream 433533 41295298 ~ 41364066 (+)
G7084 NA non-coding downstream 505380 41367145 ~ 41368478 (+)
G7102 NA non-coding downstream 661288 41523053 ~ 41529308 (+)
G7101 NA non-coding downstream 743345 41605110 ~ 41606759 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 509996 40326410 ~ 40341235 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 3003511 37832623 ~ 37847720 (+)
G6369 NA other upstream 3851073 36999357 ~ 37000158 (+)
G6328 NA other upstream 3959485 36861547 ~ 36891746 (+)
G6314 NA other upstream 4076708 36774001 ~ 36774523 (+)
G7094 NA other downstream 597811 41459576 ~ 41507231 (+)
AMCG00004304 NA other downstream 1348665 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 1827014 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 3756420 44618185 ~ 44640732 (+)
AMCG00004380 NA other downstream 5100245 45962010 ~ 45968306 (+)

Expression


Co-expression Network