AMCG00004276 (slc30a1a,slc30a1)


Basic Information

Item Value
gene id AMCG00004276
gene name slc30a1a,slc30a1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 40906392 ~ 40921474 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004276
CGCCAAACTGACACCCCCAAGGGCCAATCAGCGTCGCACATCCGAGGGCCCTCGAACTCCTCCACCAATCACAAAGCGAAGGGGCGTGCTTCGGGACATCTCCCTGTTCCGTGTGAAAACTTTGCCGGTTCGGGTGCAAACTTTCAAACCGTCTGCAAACAACAGCGGCTTGTGGACCGGGCAGCCGTGCGTCGTGTTCCCCCGAACCTTTtccttcattttgtttcctttcattgaTACGGAACAGCTCAAGGGACGCACAGGGACACCCCTAAGAGGACATCTTCCCCCCCCCCGTCCTAACAAAGCGTTCAGACACATCGATAATGGAAGCGCTGCGAATCGGTCTCTGATTGACAGCCGGCAGCCTCGGTCTCTCCTGGCTGGACTACGGTAACCCGATGGATCCATTTCCCGGGAATACAGATACGCCGATTTGAAACCTAACCGATCTGACCATTCTTTCGTGAGatccgtgtttttttttttcttccatcacCCACCCATTCTTTATGTGCATCAATTAAACACAACTCTGCGCTGAAGTGTTTCGCCCATTTCTCCTCGTTTTCCGCTGGAAATGCCTGGCATTGTCTGATGGTCCTCCCTCGCCGCACGGCTGAATTGTAGTGGAAAGCGGTCGGGAGACGCCGGCGCCTCTGCAGCGGGGAAGATGGCTTGCGAGCCCAACCGGGTGCGACTGCTATGCATGCTGGCCTTGACGTCCGTCTTCTTCGTCGTGGAGGTGGTGGTCAGCCGAATCACGCAGTCGCTGGCCATGCTGTCGGACTCCTTCCACATGCTGTCGGATGTCATCGCCCTGATCGTGGCTCTGGTGGCCGTCCGGTTCGCCGAGAAGACGCAGTCGACCAGCAAGAACACCTTCGGCTGGATCCGGGCGGAGGTGATGGGCGCCCTGGTGAACGCCGTGTTCCTCACCGCGCTGTGCTTCACCATCGTGCTGGAGGCCGTGGAGCGCTTCACCGAGCCGCATGAGATCGAGAACCCGCTGGTGGTGATCGGGGTCGGGGCGGCGGGGCTGCTGGTCAACCTGCTGGGGCTGTGCATGTTCCACGGCCACGCCGGCGGGGGCCACGGACACTCACACGGGGGCCACTCGCACGGGAGTAAGAAGCACAAAAGGGGCAAGATGGGCAAATGCGACAGGCCGTCCGGCAATGGGTCATCATCGGGCGAGGAGACCAATAACCTGGTGGGCAGCTGCAGCAGCCCCAACGGAGTGACCGCTGACAGGCCGGACCGGCACGATCTGCTGCAGGACAACAGCCTGGAGGTGCAGATGAACGGGATCACGCCCTACGAGGAGCTGGAGCCTGGCACTGACTCAGGCTCGCAGCTCAACATGCGGGGCGTGTTCCTGCACGTGCTGGGCGACGCACTGGGCTCCGTCATCGTGGTGATCAACGCCACCATCTTCACCTTCGTGTGGCGGCCCTGTGATCCCGAGCTGCCCTGTGTCAACCCCTGCATGGATAGCCACTGCACGGATCATGAGCACATCAACCACACGCTGGTCAGCCTGCTCAACAACGGCAGCCAGACGGTCACCTCGGCCGGGCCCTGCTGGGTGCTCTACCTGGATCCCACACTCTGCATTATCATGGTGTGCATCCTCCTCTACACCACCTACCCTCTGCTGAAGGAGTCGGCGCTCATCCTTCTGCAGACGGTCCCCAAGCAGATCGACATGCACCGGCTCAATGAGAAGCTGGGCAGCGTGGAAGGAGTGCTGGCCGTCCACGAGCTGCACATCTGGCAGCTGGCGGGCAGCCGCATCATAGCAACGGCTCACATCAAGTGCCAGGACCCCGCCTCCTACATGGACGTGGCAAAGCGCATCAAGGACTTCTTCCACGACGAGGGCATCCACGCCACCACCATCCAGCCCGAGTTTGCCACCGTCAACTCTGAGTCCCGCATCTCCCTGTGTGAGCTCTCCTGCCGGACCCAGTGTGCCCCAAAGCTGTGCTGCGGGGCGGCTGACAAGGCTGCCCTGGGCCCAGAAAAGAAGGCTGGGGACAAGGCCGTGGGCCTGCCCGACGCCCGCCTGGAGATCATCAACGAGTCACCTGAGCACGTCTCTCGGGACCGAGTCGCAATGGTTGCCATGCCAGAAGTCAGCCTGAGCGAGGTGGAGTCGTCGCTCTGAATATACCTCCgagagagggggcgggggggttgcAGGTGAGGGGGCACATGCAGTGCAGCTCTCTGTGTAGGCCCTGAGTGTCGAGCCAAACATTCACCCTTCATCTCAGCCCGTCATTGCAAATGGGGAACCTCCCGCCCCCGCCTCTCCCTCCTGCAGCGGTATGGTCATTCATGTTGTCACTTCACAGACGCGTGGTTAGAAACTCTTGCATGCGTTTAATTATCACTGCTTTGTGATAAGCTGTTGGATGGTGTAATCGTGCCAAAGCCTCTCAACACAGGATTTCAGGACTGTTCCACTGTTGTGACAACCAACCAAccataaaaacatgcaaaacaaaggTTACCAGTCAAGAAGACTACATCACCCAGATAGATGGCATCTGCTTTACTGTAGACATATTTTCATGTGAACTTTTCTGAATAggtataaaaatgtttttagtagGCTTGGACAATATCTTTTTGTCAGACTTTTTAGCCCATGtatgaaaagttattttatatgcatataaaataatttatgtatttaattacatttattaggattggattttttttccactagGTATACATCaatttctccctctcccacGTAAAGGTATTTGCATCAGTAGAGAAGATGACGAAACTGATGTTTCTGCCCTGTTTCAGCATAGCGCAGATTCTGTGCTGGACTGTGTATTTTGTTAGGtactgattttttgttttgtgttctgtttttcagttttgtctggtaattgaattgtgtttaaaaagttTAACTATTCTTGATGTAGAAGACAAGGGAcaacttaaaacacattttaatgtagaTTCTTATTCCAAATAGCActttttggaaacaaaatggCCTCATAAAACATCATGTATAGAGGAGCTAAATGAGTTCTCGTCacagtgaagaaacaaaatgctaaCAATTACTGGAGCTGCAGTGAAAGGCAGTTTTTCCTCTCTGACAGTTATGTAGTCATGTGCTGTTCCACCATGCAAGTGTTGGCAACCCTGTGAAACTCACAGGCCATGCGGTAATATACCAGTGATGGGATCTAGGAGCCTGTGTGTACCGAACCCGGTTGTTTTTCAAGGGGTTTGATATTAATATGGATCCAACGTACTAGGAGCTGTCAATATTctgccattttatttcatgGTTGTATAGGGGGGGTTCTCCACATTCAGTTTATGCATTGTAGAGTTAACACACTGGGACTGCTAGGACACTCCTGTGCAGAACACCCCCTTGACAACCACATGATCTGTTGCCGCCTTGGCAACTGGATAAATATTCAATATGTTCTCAACTGAAGTTATGCAGGGGGGTGCCTTCTAGTCATATAGGTCTCggaaaacaatgtataaaaaaaaccGATATACGTGGTATAATTTAAGCCACTGTTTTGTGTGAAGCCAGCCTTGTTAATTGCAAAGTTGCCAGTATGTGTTATATGATGCTTGAAACCCCCTCACTTTTGCATCCTAGAGATAGATTGAATGCTATTTGCTATAAAAGATTTCATTGGTAGCAAGCactttttagtttatattttgttagttttgttttctgcagtgaTCATTTCCCTGCATCTATAAAATACAGGCCGCGTTATTGAGATCTAATAAAGCACCTTGTCATTGTGGAAGGCTAGTGTGCATTTGTGCTGCACGCTCCGAGACTCCTGTACGCTAAAGTGAATTACAGAGTTATTAGTCAGTTTCTGCTgcgcaagtgcaaacaaaacaaacgcaATGTAATTTCAAAAGGGGCCATTGTACATCTGTTTAACAGTGCCATTAAGGCGCCTGCCTCTCATTGCAACACAGTGTTGGAAGGAGTCAGGACTTGTCTGCACTGCTACCTTCTGTGATTGACAGTTAATGAGGAGCCATCATAGGAGGAATGGAAGGACAAAGCTATGtacctttttacatttttttttgtgatgaGGACAGGCCACCAACAGAAACAAACTGGACAGTTGTATAGTGGGGGTGTTTGTAATTGTAACTGATCCCTGCCCCGCTGCTTCCCAAAACCAGCCCTTACGTAAGGGGCACTACAAAGCATTCCACAGCAGCTCGGTACGACGCTTCGGCCATCTGTCCTCATTATGAATAGAGATGGAAAAATAGGTCTGGCTGGAAGGGGGAGGGATCAGTTTTCCTTTGTAACTCCAGCTTTTCCAGGGGTTAACTGGATTAAATCGCAGCGTGTTAAACAACAGCTTTAATTTTCAAACCGCAACTGCCTCATtatagtcattttattttaatctcgcaagaatatttttttcctgtccaTTTTGTCCTCCACCTGTGCATTTTTAACtggagttttatttaattttaaacccatATTGATCGTCATTTTTAGTAAATGCAGTGTGGTGCCTGTCTCCCCCACCCCATCCCAATCCCAACCCCATGTCCACACTTCTCTGGTGTTGGAATTGGAGCAGCTGGTCCAGATGGACAGTCCTAATTCAGCCTCTTCCCAGCACTCCCTGTGTGGTTGGTATGGTAGATTCTGAAGTAACCATGagatggcattttatttttattttatctagaTACACAGCCAGTGTAGGAGAAACGTTGTTTCTGATCTTCCATATGTATGAGTCATATATAAAGGAATTTCCCCCCCAATAAACCACTATagcaaaagcattttcaaaatgtactgtCAGGTTGTCAGGAAGCTGTGTGTTCTTGCCCATTCTGCAGTCTATGCTATATTGTGAATAGAGTCCttatgaacataagaaatgcatcaaccccccccacccctttgaAATGATGAAGCATAtgcaaaacactgaaatgcatttatgcTTCTAAGAATAAAAGAGAAGGAACAAAAAAGATTTGGGTGAAAATGTCTATTTCTTGTGCtatgtgaaaataatgctgCAATGTTTTCTCACTTCCTAGTTTTTGGATCCAGGGTGAAAAATGTAACCGTGGTTAAATGTCTGTATTCCTAGGTGTTAATCCTTGTGGGGTTTTATATTGTCAAACTTGAGATCATCTCATTTTGCTTTATGTTCATATTCTGCCATAATTTCTACAAAAGCCAACATTGCaaataacctttttatttttacctcagCAATTTCTGTAGTTACTCATGAATACCTTGGGTAATCCTGGTGACACTCAGTTAGCACAAGAAGTGAGATGCAGACAGTATACATGATCAGCGTTTTGGTGCTTTGTAGCTGTGTGTGCATCGTGAAGTATGTGTTCTGTGTTCCTGCCTTGTGTTCTTCTGCAGCCCAGTCCTTTAGAGTCGGAAATGTATCTAGTTAGACAAGTCAGCTGAAGACAGTCTTTGTGGTCTGTTACAACGTCTGTTATTCTGTTTGGAGTATCTAAGCTGTGCTCTGGCTCAGTAGATTTACAATATATTCTGCTACGTTTAGTAAGATACAACTATCAATGTCTATAAACCACAGCTGGGGTGTAATAAAATGCTAaactattttgtaaaataaaataattgtcatgGCAGATTCAAGTAAaatgttactactactacaccagtactcactttttttttttttttcacttatcaTTCCTAGATTTAAGCCAGGATTATGATGTTTTAGAAATATTATATTGGTTATGTACTCCTGTAAAGTTCAAAGAttgacaaaaatgtatgttgcaccaccaaattgtttttttgtttgttttctttcctttattgtttgtttcctcaTTGATTATGCAGTAAATATTTAGAGAAAAGTGTCAATGAAACTACTGCTTTCTGAAATAATTCCAATAGATCATTTAACTATCCAGGtatgattataaaaaaacaaaaaatctctctcctaaataaaaatgaggtagttatttaaatgtcagtggTGAGTCCTCCTTGCTTCTGAGTTTTGTAGACTGATGTCAAGACAGAATCTTTTCAGTTCTGTTAAGAATTTTTCTAAGGATTTTTTATCTCCGTGTTTGGATATAcactttaacattgtttttatgttcacAAACCTGGTGCTTTCCGAAGAAAATATATCTGACTGACCTGGAGTAGAATTCATGATTctgtgatgaaaatgttttatccCGTTAACAAATTGAATCCTCCACTGTTTGATTGGCCTCTGCTTTTATAATATTGACCTATATTCGGTTTACAATGAGGCCTCAAACAGATGCCTTggtcttctggttttctttcTGCTACATAACTACTACacttagtttgtgtgtgtgtaagtgacGTGCGGGTGACACCTTACCAGTGCGTGTCTGTGCTGGAGTGGCTCAGAGGAaaggcagagaaaataaattcatCAGAACTTGGGTTCATATGCCCACACAATTATGACAAGAGCTGGTTAAGGACCATGTATTTAGAGGCCATGAATgcaaatactaatatatatatttttaatgttctacAACCAAGGTATTTTATCtggtgaaaggaaaaaaattgcatttattgcaGTTGGAAATGGAATGTCTGAATCCCCCCATCCCTTTGCGTTTCCCGAACGGTGTTCGAAGGCCGCACTGAactgcagagctgtgtgtgagtgtgcctTCCCCACCACATTGATTTCTGAGCTCATGGTTAGATttgcaatatgtttaaatgtaaaaacatctgTGACAGTGGCTTGTATTAACCCATAAGCAAACCTGTTATGTCAAGATGAATGCAGGCTTTTTGGCCCATTTGTTGTGTGTTACAGTTCATTCTGATGgttatttacttttactttttaatccCCCTGGACTGTGCTCCTTCAATTtaagtgtatttatgtatgtaagtaatacatatattcaatatgtatgtgtattttattatttatatggtGAATAACAAGCTTGTCATTTCAAAATCTTGAGGTGGGGTTTATGCTGTGACGCTTCATCTATGTGTGTGGTCATTTTTGGTATTGACAGTACTGATACGAGAAGAACATCAACTAGTTCATGCATTAAAGTGCATAGGAATTAAACTCAGCTGCAcccatttataatttaaactaaACTTGTGTAATTTAACCAGTTGTCCTTAAATTATCCAacctccaaaataaataaatacaataattgaaactaaaaataattgaaGTCACAATTTAATGTATCTTGATTCAGTACTTTCACCCTTTAGGTTAACCGCCAGTTATTGATTAACTGTTATGTTTTAATCAGTATGTCAGCATAACTTTTTGCTCTTTACACTTGCAGTGAGTGCAAGGTAAAAGATACAGGTTTACAGCCTATATCATGAATCCAGTTCACTGTAGATCTGTGGAGCTGTTCTTTCTTCTCAATCTTTACTCTGCACTGATAGTTGCTCTTTAATGCAGCGCTGCTCAGCACGTGAAAGCAAACTGTACTTATGTGGTCATGTATTTTGCAGCTGTGGTTTAAGAGGACAAACTGTAAATCTCACCACTGTCTGCACAATAGGAGAGTGCTTACTTCTCCAGTAGTACTGGTAGACCTGCGGAGGTCTCTTAAACCCAAGACCTACTAGTGGACCTGTAAGAGACCCGACCATTTGTGCAGTTTAAATCTGTACAAGCCACACAATACTGAATCCGAaatttttggttttcttcctCTGTAGTGCATAGTACACCGACCGTGGGGTCTGCTATTCTGTGCTGTGACTGTGAATGTTTTCATAACTAGTAAAGCTGtactattttgttttcaataagtGTTGACAGTCCTgctttttgtactttgtcatcctttgtgtgagaaaatagaCCTTTGCATTCAGGCATTCTATCTGGTCACCTAAAGCCAACTTCAAGGCCCTGCTTATGTTAGTCTTTATCTTCATGCAGATAATTGACCAACATGCTTCATGTGCACTTACACTGACATCGaggcagaaacacaaaaaaaagtgtccttCACACACAACACCTAACACAAGGTAAATGCAATTCCCCTGAAGTCCTACTTTCGACAATTGTATAGAAGATAAATGTGGTGATTTATTGTGTCAAAGGAACATGATTAACTTTCCTTTGCTGTCTGTGATTCAATTTAAGCCAGTGTGGTGAAGAGAGGCATGCACAAGCTGATATTATTACTGTGCTTTGATTGAAAAACTGTTATTGTGGAGATTGGTTTGTATGGTCAGTGATGTTCATTTACAAGTAGTGAAATGAAATGacagtgtaataaatgtaatgaaaacctATTTTCTTAAAAAGGGTAGATTTATTTCCACATCTTTACATTATTAGCAGCATATATTCATTACAATGATACAACACATGTAGGAAATTGGcatattcatgttttcaaaatgatacTCTGCAACTCACTGCCCCTTACATACATGACCTCAAAGATAGTGCAATGATTACCAggatatgaaatatgaattccTTGGTCTATCaatccaatttccatttattgtcttttattatCACATTTCATTGAACATGCTTCTATGTAACcattttttcattcattgcACTTTCTACATCTATAATTTCTTTTCCAAAATTGTCTCCTTCACACTTTCCAAATGTCAGATTTATTCCGTG

Function

symbol description
slc30a1a Predicted to enable calcium channel inhibitor activity and zinc ion transmembrane transporter activity. Acts upstream of or within response to zinc ion. Predicted to be located in membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Predicted to be integral component of membrane. Is expressed in central nervous system; hatching gland; and yolk syncytial layer. Orthologous to human SLC30A1 (solute carrier family 30 member 1).
slc30a1 Predicted to enable calcium channel inhibitor activity and zinc ion transmembrane transporter activity. Predicted to be involved in several processes, including cellular divalent inorganic cation homeostasis; inorganic cation transmembrane transport; and negative regulation of transport. Predicted to act upstream of or within in utero embryonic development. Located in several cellular components, including Golgi apparatus; endoplasmic reticulum; and nuclear membrane.

NR:

description
zinc transporter 1 isoform X1

GO: NA

KEGG:

id description
K14688 SLC30A1, ZNT1; solute carrier family 30 (zinc transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004276 True 8732 mRNA 0.44 2 40906392 40921474

Neighbor

gene id symbol gene type direction distance location
AMCG00004277 LOC107712406 coding upstream 1659 40897450 ~ 40904733 (+)
AMCG00004267 lpgat1,LOC106607581 coding upstream 44627 40851231 ~ 40861765 (+)
AMCG00004268 ints7 coding upstream 81411 40811386 ~ 40824981 (+)
AMCG00004266 NA coding upstream 176588 40722163 ~ 40729804 (+)
AMCG00004264 NA coding upstream 288202 40606454 ~ 40618190 (+)
AMCG00004278 NA coding downstream 17111 40938585 ~ 40940764 (+)
AMCG00004280 LOC105908978 coding downstream 79173 41000647 ~ 41011758 (+)
AMCG00004286 hadha,LOC102787580,LOC102203549,LOC100703423,LOC100304971,LOC106603767,LOC107594700 coding downstream 455394 41376868 ~ 41387623 (+)
AMCG00004289 LOC107593268,LOC107719402,LOC107697206,LOC107721442,LOC107690993 coding downstream 543473 41464947 ~ 41517390 (+)
AMCG00004291 NA coding downstream 621602 41543076 ~ 41550969 (+)
G6850 NA non-coding upstream 707430 40148962 ~ 40198962 (+)
G6847 NA non-coding upstream 792441 40110200 ~ 40113951 (+)
G6840 NA non-coding upstream 817478 40088608 ~ 40088914 (+)
G6819 NA non-coding upstream 872069 40015267 ~ 40034323 (+)
G6807 NA non-coding upstream 961337 39944500 ~ 39945055 (+)
G7048 NA non-coding downstream 56525 40977999 ~ 40978319 (+)
G7078 LOC103376870 non-coding downstream 373824 41295298 ~ 41364066 (+)
G7084 NA non-coding downstream 445671 41367145 ~ 41368478 (+)
G7102 NA non-coding downstream 601579 41523053 ~ 41529308 (+)
G7101 NA non-coding downstream 683636 41605110 ~ 41606759 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 565157 40326410 ~ 40341235 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 3058672 37832623 ~ 37847720 (+)
G6369 NA other upstream 3906234 36999357 ~ 37000158 (+)
G6328 NA other upstream 4014646 36861547 ~ 36891746 (+)
G6314 NA other upstream 4131869 36774001 ~ 36774523 (+)
G7094 NA other downstream 538102 41459576 ~ 41507231 (+)
AMCG00004304 NA other downstream 1288956 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 1767305 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 3696711 44618185 ~ 44640732 (+)
AMCG00004380 NA other downstream 5040536 45962010 ~ 45968306 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017191 nek2 coding NC_007131.7 CM002904.2 13883131 ~ 13913790 (+)