AMCG00004277 (LOC107712406)


Basic Information

Item Value
gene id AMCG00004277
gene name LOC107712406
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 40897450 ~ 40904733 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004277
CTCGTTTCCCGAAGCGGCCAATCAGGATGGCGCATGAAGGACACCAATTTTAAAGCTTGGTTTCCTGGTCTTTGCCGAGCGTGCTGGTGTTATTGTGAAACGGAACAAGCGGGCGccgttttttttaaagtattgtttttaaaaggtcacTAATGCGTTAAATGAGTTACTGCAACACAAATATCTAGCCGTACACCGGAGGTTAGAGTTTCGGTTCGCCTTTGCAAAGAGCCAGCTGCGGCAATGCCTTCCCGTGTGGAGGACTACGAGGTCCTGCACACCATCGGGTCCGGGTCCTATGGCAGGTGTCAGAAGATCAGAAGAAAGGCTGACGGAAAGCTCCTGGTCTGGAAGGAGCTGGACTACGGCACCATGACGGAGGCCGAGAAGCAGATGCTGGTGTCGGAAGTGAATCTGCTCCGGGAGCTCAAGCACCCTCATATTGTCCGTTACTATGACCGTATCATCGACCGGACCAACACCACGCTGTACATCGTCATGGAGTATTGTGAGGGGGGAGACCTGTCCAGTCTCATcaacaaatgtgttaaagagAGGCGATACCTGGATGAGGAGTTAATTTTGCGAGTCCTTGCTCAGCTGGTTCTGGCACTGAAGGAGTGCCATAGACGCAGCGATGGGGGGCACACTGTCCTGCACCGCGATCTCAAGCCTGCCAACATCTTCCTTGACGTCAAACAGAATGTCAAGCTTGGAGACTTTGGATTGGCTAGAATATTAAATCACGACACCAGTTTCGCCAAAACATTTGTGGGAACACCATATTACATGTCCCCGgAGCAAATAAATCGGATGTCTTACAATGAGAAATCTGATATCTGGTCTCTTGGATGCTTGATGTATGAGCTTTGTGCACTTTCACCCCCGTTCACCGCCTATAATCAAAAGGATCTGGCTGAGAAGATTCGAGAAGGGAAGTTCAGACGGATTCCTTATCGATACTCCGAAGACCTTAACGCTCTCCTGTCCAAAATGCTGAATCTGAAGGATTATCTGAGGCCGTCGGTTGAGTCGATTATTCAGAACCCCCTGATCGTGGATGTCGTGGCGGAGGAGCTGAGGAAAAACAGCGAGCGCAATCGGAGGAGGTCCACGGAGGCCGAATCGCCACAGCCTACAGACTTATCCGCGGCAGAGCAGAGACTGAaggagcagcagctgcaggccCGGGAGCGCGCCCTGAAAGAGCGGGAGCAGATGCTGGAGCAAAGAGAGCGAGAACTTTGTATTCGGGAAAGGCTCTCGGATGAAAAGCTTGCAAGgGCTCAGAGCTTGATGAAGAACTACAACCAGCTAAAGCAACAGAAGATCCTCTCTGAAATCTATTCCAATGCACTAGCAGATGAGTGTGAAGAGAACCCTTCACCTGGAAAAAAGAAGGTCCATTTTGCTGGAGACAGTAAAGAGAACAGGAAACCCGACAAGCTGGCAAAAGGCAAAAACCAGGAGCTGAAGAAACGGTTGCAGGCAGCAAATCTTCGTGCTCAGGCCCTGTGTGAAGTGGAGAGAAATTACCAGTTCCAAAGCAGGCAGATCCTGGGCATCCGTTAAGGGATGAGCCACGGCATTCAGTTAGGTAGTGGACCATGAATGTGAATTTGTAGAACTTTTTGTTTTAGGGTATGTACTGTTTTAACCTGCTAATAAGTGATGTTTGATTGTATTCCTCATAACATGGGGAACATGTTAAAACAACTTATGtggtggatggatggatgaagtattttgttttcagtttttaataagCAGCACAGGATCATTAAAGTTTTTAGTGGAGTCatgaatataaatgcatacTCCCTGCTGTAAAATGCAATAGTTCACCTTTTTAAGGTGGGGAATTGACATCATGAAAGGGCTGTGTTCTGTTACActtatgattttaaattgtgtgtacTTTATGGTCTGTAAAGTATACTCTTCACCTGCACCTTTTATGTTCCTTTCTTAAAGTTCAGCAGCTTTTTCcaaatgtaatattgttaaCCCCCTTTTATTGAGGACATTTTATGAGTATGGATGTCTGAATCTTTTATTAGCTTCAAGGTGAGGTTTGTGACTTTGCAGTAGAAGATGGATTGGTTGCATATCATGTTCATCTGACCAAATCCCTTGGCACTAGATCATAATTTGTTTGCAACAGTCTTAATTCTAAATGCATGAGAAACTATTGTTTGTGGTTGGGTAGGTGAGAAAGTTAAAGGACCGAAGGCCCGGGGGGGTTGCATTAGCAAACTGAGGGCAATGTTTGAAACTACTGAAAGTTTTTGTAAGTGTAAGAAGAGTGTGGAGAGAGACTTAACAATTTCACCAAAGCATTTGTAAAGGACTTAATCCTTTATAGAGTAGGGCAAACTAAAACCAAACTACAGCACcctttctatatatttattttgattcacTAGGGCTCAGAATATCTTGATTAAAGTTGTAGGGTacttcccccccccacacacacattccccTCTCTCTGAAGTTTGATTAGTTTCAAAGTGACACTAAAATCTGTAAGTCTGACACTGATGTGTTTGTTCATCTAATTCCATTAATTTGATCAATTTTAGCATAGGAGAACACCTACTAAACTCTTCCTTTGCAGCAcactatataacatttttttttacacctggGATAATGTGTTTGTGGACAGTGAGATTCAGTTCTTGTAGCTGATGATAGGGGCTTTTTTTCAATTATCTATTGCAAAGACaggattttatttccttcatacttatttatatatggattacagGTGTTATTGTTAGAATGTGAACCACTTCAGTTATCAGGCTCTGTGATTGATCTCAATGCTGTGTcctttttaaaaggaataacatttatttttgtatacaaatgtatttctggAAGAGACATTAAtataatagtttttcttttttctttgagtAATTAAAAGGCAAacttcaaatgtgtattttttcctaATCTGTAACAATAACAGTTGAGTGCCACAAGGTGTCTCCACTccacaaaacaataatttactGGAGAGTAATTTAAAGGGCTTAAATCCTACTTTGCTGCTTGATTGATGATTAGAGTAATAATGACATTCAAATACAGTTCTCCTGTCATTCATAAGAGAACCAGTGGTTCAGTTTAAATTGAACCAGGAGAAACAACACCTTGTGTTTCTCATAAATAAACAACCCTTTTCCTAATGAGGGTTGTTTCAAATACTGTAGTGCGAGTCAGTAGAAGGAACGGGGTGAGAGCTGGACTCAAATAATGCTCCCAAATGTTCCCTTATTAATAAGATGCCACCGCAGACGGTCATAGGCAATGCATAATATCGACGAGGGGTTCCCCACATTTTCCAAAGTCCTGATTTAGAAAATCAAGTCCCATGAAATGAGGTCTACACTGGTGTAGACAGGTGACTAAAGAGATCGTTTACATGCATGTACAATAGAGTGGTTCTTCTGGATTCAATGTACTTactgtacatgtgtgtttgatgcagctgtgttgttgtttttttttgtttttttatatttttttccagacacAAGCGTCTGTCTTTGTCAGTGCTGAAATACATCGAGGCAATAGCGTAAATAACAGTAATGTGCTCGAATGGTCAAAAAGTTGATTTGAAATGGTCATGTGACTGGTTTCCACTTGAAAGATGACAGAGATCATGCTCAGCTTGTCAGAAAGATGAATGCCTGGTTTCTGAACAGTGTGTTTCTATTACGACTTGCCATTTATTACATCTCACAAAATATTCCTTAGTCTAAAAGCAGAAAGGGAATCGGTG

Function

NR:

description
PREDICTED: serine/threonine-protein kinase Nek2-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K20872 NEK2; NIMA (never in mitosis gene a)-related kinase 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004277 True 3799 mRNA 0.42 9 40897450 40904733

Neighbor

gene id symbol gene type direction distance location
AMCG00004267 lpgat1,LOC106607581 coding upstream 35685 40851231 ~ 40861765 (+)
AMCG00004268 ints7 coding upstream 72469 40811386 ~ 40824981 (+)
AMCG00004266 NA coding upstream 167646 40722163 ~ 40729804 (+)
AMCG00004264 NA coding upstream 279260 40606454 ~ 40618190 (+)
AMCG00004265 NA coding upstream 298616 40570960 ~ 40598834 (+)
AMCG00004276 slc30a1a,slc30a1 coding downstream 1659 40906392 ~ 40921474 (+)
AMCG00004278 NA coding downstream 33852 40938585 ~ 40940764 (+)
AMCG00004280 LOC105908978 coding downstream 95914 41000647 ~ 41011758 (+)
AMCG00004286 hadha,LOC102787580,LOC102203549,LOC100703423,LOC100304971,LOC106603767,LOC107594700 coding downstream 472135 41376868 ~ 41387623 (+)
AMCG00004289 LOC107593268,LOC107719402,LOC107697206,LOC107721442,LOC107690993 coding downstream 560214 41464947 ~ 41517390 (+)
G6850 NA non-coding upstream 698488 40148962 ~ 40198962 (+)
G6847 NA non-coding upstream 783499 40110200 ~ 40113951 (+)
G6840 NA non-coding upstream 808536 40088608 ~ 40088914 (+)
G6819 NA non-coding upstream 863127 40015267 ~ 40034323 (+)
G6807 NA non-coding upstream 952395 39944500 ~ 39945055 (+)
G7048 NA non-coding downstream 73266 40977999 ~ 40978319 (+)
G7078 LOC103376870 non-coding downstream 390565 41295298 ~ 41364066 (+)
G7084 NA non-coding downstream 462412 41367145 ~ 41368478 (+)
G7102 NA non-coding downstream 618320 41523053 ~ 41529308 (+)
G7101 NA non-coding downstream 700377 41605110 ~ 41606759 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 556215 40326410 ~ 40341235 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 3049730 37832623 ~ 37847720 (+)
G6369 NA other upstream 3897292 36999357 ~ 37000158 (+)
G6328 NA other upstream 4005704 36861547 ~ 36891746 (+)
G6314 NA other upstream 4122927 36774001 ~ 36774523 (+)
G7094 NA other downstream 554843 41459576 ~ 41507231 (+)
AMCG00004304 NA other downstream 1305697 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 1784046 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 3713452 44618185 ~ 44640732 (+)
AMCG00004380 NA other downstream 5057277 45962010 ~ 45968306 (+)

Expression


Co-expression Network