AMCG00004278


Basic Information

Item Value
gene id AMCG00004278
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 40938585 ~ 40940764 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004278
ATGTCTCTCCCGACAGGACAGCAGCCCAGGACAGCGGCCATGGCCTCATGGTTCAGGTGGAACGAGCCGTATCCTCGGCACGCGCAGCGCAGCCCCACAGACATGGTGACCGACACCCTGATGCTGGAGCTCAGCTGGCAGATGAAGGAGGCCGAGAAGCTGCAGCGAGAGCGAGACAACGAGTACCGCAAGATCAAGAGTGGGGTGGACTACAGCTGGCTGGTCAGCTACCCCAAGAACACTTACGACATCGCCCAGGGGGAGCGGCTGGAGCTGGAGGACGTCTGTACCAAGATCCACCCCTCCTACTGTGGGGCCGTGATTCTCAGGTTCAGGCAGCTGGTCACAGAGTATGAACCCGAGGTGCAGGAGGTGTCTCAGATCTTTCGCTCTGTCCTCCTGGAGGCCTTGGATAAGatgaaggaggaagaggaggccaAGAGGCTCTCCCGGCAGTGGAACAACCAGCGGGCCATGAGCCTGTCACTGATGACCTTCAAATCCCGCGTCAGGATATACCCCTTCGGCAGTGACATCAAAACCGTCTCCGAGGACGTGGAGAGGAATGGCGAGCGCAGCAAACGAGTGTGGAGCTTGCCAGAGTTCAGACACAAGAAAGAGATCTGA

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004278 True 627 mRNA 0.59 2 40938585 40940764

Neighbor

gene id symbol gene type direction distance location
AMCG00004276 slc30a1a,slc30a1 coding upstream 17111 40906392 ~ 40921474 (+)
AMCG00004277 LOC107712406 coding upstream 33852 40897450 ~ 40904733 (+)
AMCG00004267 lpgat1,LOC106607581 coding upstream 76820 40851231 ~ 40861765 (+)
AMCG00004268 ints7 coding upstream 113604 40811386 ~ 40824981 (+)
AMCG00004266 NA coding upstream 208781 40722163 ~ 40729804 (+)
AMCG00004280 LOC105908978 coding downstream 59883 41000647 ~ 41011758 (+)
AMCG00004286 hadha,LOC102787580,LOC102203549,LOC100703423,LOC100304971,LOC106603767,LOC107594700 coding downstream 436104 41376868 ~ 41387623 (+)
AMCG00004289 LOC107593268,LOC107719402,LOC107697206,LOC107721442,LOC107690993 coding downstream 524183 41464947 ~ 41517390 (+)
AMCG00004291 NA coding downstream 602312 41543076 ~ 41550969 (+)
AMCG00004292 NA coding downstream 627645 41568409 ~ 41600974 (+)
G6850 NA non-coding upstream 739623 40148962 ~ 40198962 (+)
G6847 NA non-coding upstream 824634 40110200 ~ 40113951 (+)
G6840 NA non-coding upstream 849671 40088608 ~ 40088914 (+)
G6819 NA non-coding upstream 904262 40015267 ~ 40034323 (+)
G6807 NA non-coding upstream 993530 39944500 ~ 39945055 (+)
G7048 NA non-coding downstream 37235 40977999 ~ 40978319 (+)
G7078 LOC103376870 non-coding downstream 354534 41295298 ~ 41364066 (+)
G7084 NA non-coding downstream 426381 41367145 ~ 41368478 (+)
G7102 NA non-coding downstream 582289 41523053 ~ 41529308 (+)
G7101 NA non-coding downstream 664346 41605110 ~ 41606759 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 597350 40326410 ~ 40341235 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 3090865 37832623 ~ 37847720 (+)
G6369 NA other upstream 3938427 36999357 ~ 37000158 (+)
G6328 NA other upstream 4046839 36861547 ~ 36891746 (+)
G6314 NA other upstream 4164062 36774001 ~ 36774523 (+)
G7094 NA other downstream 518812 41459576 ~ 41507231 (+)
AMCG00004304 NA other downstream 1269666 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 1748015 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 3677421 44618185 ~ 44640732 (+)
AMCG00004380 NA other downstream 5021246 45962010 ~ 45968306 (+)

Expression


Co-expression Network