AMCG00004279


Basic Information

Item Value
gene id AMCG00004279
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 40942095 ~ 40950517 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004279
cgGCAAATGGCTGTGTCCAGTCGTGTATGCGGATGTGTAGTTTGTGttcatctttatttttggaTGTTATTGTTGACCAGGGACCAGTTAATCGCCATATAAAATCAATGCACTCCCACATAAACAATAACGTAAAATATCTTACACCAAAGTCTACAGTTTATATGGTGTGCTCGTATAGataTGGATTCTCAAGAAAAGGGAAGAAATAAGTCCACTTCTTCAGTGGAGGAGAGAGGTGCCCGGAGCAGAGgaaaggaaaagaagaagcGGATACGCAGTCCCAGCAGGTCCTCCTCGAGATCTTCCTCTAGCTCTTCGACATCTTCGTCATCGTCCTCTTCTTCATCtgtgtcctcctcctcctcgcgcAGTAGAAGCCGCTCGggcagctccagcagcagcagcagtgGTTCCCGTGGCAAGTCCAAGGccaggaaaagaaagaaggaaaaacaacataaaaagaaagtaaaaaaagataagaagtacaagaagaagaaagacaagaaaCTGAAACGCGAGGAGACGGAGAGTTCGTCTGGACCAGTTCAGATCTCAAAGTTTTTGAAGGATAAGAAGAAAAGAGACAAGTACAGCATGATTTCAGGGAAGAGgattaaaatgaaagtgaaaaagaCTAAGAAGGACAAACAGAGAGACAAAAACCGCGCCGAGCTGTTGGAATTCCTCAATTCTGCCTTTTGACTCGAGGAACATTATgaagtagttttttttccttcacatttTCCACGTTTCAGGAGTCCCACTGTGACAAGCTAGAAAACAAACTCAGGGAACTTTTAAAAACCTGTTTGCCCACCTGAACTATTGACCTgcgttttatttaaattttcccagatgtttttgtttttagttaccCCACACCaagacagaaaaagagaaaataatggaaatatcataatcataatataagtataccccaaaaaaaaaaaaatgtttcttcatttttttcaccCCATTTTACAATTGTCTGGCCAATTACCAATTTTTGCTGAATACTTTGGTGATAAATTAGGCTTGGCAACAATTGGGCCAAGCAGATTATTAAAGAAGAAGTAAAGCAGAGTGTGTGTAAGCTATTCAATGTGCAGCCCTGCCCTTTAATTTAGTTATATCAATTAGTTGCAATTAACAGGTACTGAACCCCTTCACCAAAGccagtctttgttttttcttcttctacaaAGAGATCttattaatattcttaaaatatatccttataataatcaatatataatattgaaagTACCACAATATGGGATTATGTATCGACACTGCAGTTTACTGTGCTGTgcaaatgtcaaatgtttttttatttttattttcacagctatagtggaagaaaaaagtacaaatgttGTGAGCGTTATTTAATTGTCaattatttccccttttttcttttaggtTGATTTCCTTTATGCAGAATTGTTGAccaactaaattaaataagctTCATGATTGGATTTGTCTAGGGTTGTTTGCCTTAGAATAGATTTTTGGTCGATTGTGTATTTGAGCTTGGACATAACACCCTTGATTGTTTTAGATGTCTTACTTTCCTCTCTTCATATTGAACGATTCATACAGTAAACCCTAACTGTCCACCTAAGTCCTGACTTTCAAAcctttaacttaaaaaaagatttatagtagctgtgcttttttattatgtttgtgtgatttatttcagttataatTATTAGTCCTCCCTCCTCAGTATTGGGTTgctacttttttcattttggacTTTAATTTCACTCGCAGTCAATCCTGAACCTAAAGGACTAAAgcttaataattttaaaaatatatgaaatcttaaaatacatgtgtACAAAAGAACTCTGCTCCCTATATATGACtgtactttttatatttttatgctATAAGAGCAGCTGATGTCAAGATTCTTGGTTCTGATTCAGTCACTGACTTGCCATGTGTTTACTTGAGCAATTAAACCTCAAGCTCATACTGTGTGTCAGTTAACCCTTATTTTCTGTTGTGAAAAGAAGTGATGGTCCTGCAAGCGGCTTCATTGGAACCTGGTGAGTTTGAAATAACTGGGGTCTTGGAAGTCAATCTGTGATAAAAGACAATCAACAGATGCCACATGGGGTCAGGAAGGGAAACATAAATTCACTTCCAGTATTGAACAAACGGTccattagtattattgttaggGAAAGGCGAAAACAAGTGTTTAAGGTAAATGGCCATCAGAGGAAAGCGACAGGGAGTGTGCCTCCTGATTTCTCTGCTGTCGAACCATATCATTATTAAACGCTCACATTATCCACCAGGAAGTGCTGGACTACAAAGGAAATATGCTGCCCACGGCAGAACTGTGGTTCCTGACTGACAGAGCGAGATACAGATTACTCTGAGCACCACTGCCACTAATTCATTACAATTACTGCAAGTCATCTCATTAATGTCCTGTGGTGTAAGAAccttttcaatacaaaatatctgCATTGTAATCATGCACAATCTCATGAGAAGGGCatgtgtttttatgattataatttcagtttaaaggGCCATTTCAAGAGTAGACAACCCTGATTGTGgtctattattttaatatgacattTGTTGGTCATGGAATTTCCCGTGCCAAGTGgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004279 True 2652 mRNA 0.37 7 40942095 40950517

Neighbor

gene id symbol gene type direction distance location
AMCG00004270 NA coding downstream 130796 40800935 ~ 40811299 (-)
AMCG00004275 ppp2r5a,LOC106571204,LOC106607584 coding downstream 181206 40729815 ~ 40760889 (-)
AMCG00004272 NA coding downstream 220348 40718598 ~ 40721747 (-)
AMCG00004274 NA coding downstream 226846 40710696 ~ 40715249 (-)
AMCG00004271 NA coding downstream 248308 40666125 ~ 40693787 (-)
AMCG00004281 rhag coding upstream 3353 40953870 ~ 40966337 (-)
AMCG00004282 NA coding upstream 35223 40985740 ~ 40994592 (-)
AMCG00004284 tfap2b,LOC107697208,LOC107719371 coding upstream 259874 41210391 ~ 41225185 (-)
AMCG00004283 tfap2d,LOC107690996,LOC107593304,LOC107721448 coding upstream 287910 41238427 ~ 41248474 (-)
AMCG00004285 NA coding upstream 416284 41366801 ~ 41374949 (-)
G7035 NA non-coding downstream 20621 40916449 ~ 40921474 (-)
G7023 NA non-coding downstream 58928 40881808 ~ 40883167 (-)
G6974 NA non-coding downstream 245780 40675171 ~ 40696315 (-)
G6939 NA non-coding downstream 339280 40598954 ~ 40602815 (-)
G6872 NA non-coding downstream 815303 40126548 ~ 40126792 (-)
G7104 NA non-coding upstream 343659 41294176 ~ 41364065 (-)
G7115 hadha,hadhab,LOC108425650,LOC106603767,LOC105898013,LOC100304971 non-coding upstream 434203 41384720 ~ 41386556 (-)
G7117 NA non-coding upstream 509292 41459809 ~ 41460321 (-)
G7130 NA non-coding upstream 623732 41574249 ~ 41574460 (-)
G7131 NA non-coding upstream 631944 41582461 ~ 41582767 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other downstream 1092972 39841935 ~ 39849123 (-)
AMCG00004203 NA other downstream 3560142 37324010 ~ 37381953 (-)
G6441 NA other downstream 3573273 37367985 ~ 37368822 (-)
AMCG00004188 srp9,LOC107553440,LOC107601484 other downstream 4154973 36783743 ~ 36787122 (-)
AMCG00004189 NA other downstream 4163033 36769048 ~ 36779062 (-)
AMCG00004302 NA other upstream 1114472 42064989 ~ 42067664 (-)
AMCG00004313 NA other upstream 1426209 42376726 ~ 42531006 (-)
AMCG00004336 NA other upstream 2452436 43402953 ~ 43450255 (-)
G7608 NA other upstream 3570397 44520914 ~ 44522213 (-)
AMCG00004364 NA other upstream 3589646 44540163 ~ 44561575 (-)

Expression


Co-expression Network