AMCG00004280 (LOC105908978)


Basic Information

Item Value
gene id AMCG00004280
gene name LOC105908978
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 41000647 ~ 41011758 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004280
ATGAAGAAGCGCTATGTGGACGCCAGCAGGCtcaggaaaatgaaaaggagcAAGATAACGGAGAGGCTCTCGGAAAGtgcttttacatttctgaagttTATGATAGTGTGGATTTTGGTTCTCCTGGCCGATTTCATTCTTGAGTTTAGATTTGAGTATCTGTGGCCCTGCTGGCTTTTCTTCGGGAGTGTTTACACCTTTTTCCACTGCCATGGGCTGGTTATATGTGTGGTGTTTGTATGTGCAGCCTTCACCCTTGATGTCTTCTGTTTAATTTTTGTACCTCTGCACTGGCTGTTCTTTGCTGCCAGCACATATGTATTATTCAATTACATATGGCATACCGaGAAAGGGTTGTGCTTGTCGACAGTTTCCCTATGGATACTGCTTGTTTATATTGAAGCATCTCTCAGGTTCAAAGATCTTAAAAATTCTCATCTGCGGATCCAGAAAGCAGTGCAGAATGAAAACGACTTCTTCATGCAACTGCTGCAACAGTCTCTACCTCCAGGGCAGCTCTATCCAAGATGTGTAACAGACTGCAAGGACACTTCTAAGTGGAAAGCAAAATCAGAGTTCCCACAATACCAGTGTCGAAATGGCCCAGTAGCCACAGATGACAAGTACCTGTTGGACTGTCTCCAGCTTGACAAAAAGAATGACAAGGACGTGGAAGACACAAAAGTGACTGATGTCAACATCCAGCTTCCCGATCTAAAATCGAGTGACAATGTGCTCAAGGAGAACTTCCTCAGTAGAACTGGGATGTCCGATTCTTCTGGGAGTTCTGAAAGTCTACCTCAAGAAGAGCAGGGCTGTAAAGCCCCAAAGCTGTTAAAGAGCTCTTCACCCAAAGCGCGGAGGACGCCCAGCAACAGCACTGTGCCTACTGTTAAAGGGGAGAAGAAGCAGAAAAGCACTACCAAAAATATCAGTCCCAACCGAGAGACGGGTGAacagaacatttcaaataatcaCAACATTCACTCAGATCAGATAAGCagATTGGAGCAGGAACTCAAAAGGTTAAAAGGAGAAGTTCAGACGAGCAAACAGACAGAGCAGGAGCTGCGCAGCCACTTCTGTAACCTGACGAACAGCGAGAGAAGCCTTCGGCCAGAAGTCGTACTGCTGCGGCAGGCAAACGATTTGTTACAGAACAAAATTCtttgtataatgaaaaacaagcaaaaggaCAAACAGACATGTACATTGCTAGAAAAAAAGATCAAAGCAGAGGCGGAAGCTCGAGCAGCTATTGAGAAGCAGCTGTCTGAGACACGGACCAGGAAACTTGACGACACTCCTCTCTTGCCTCAAGGTGCTCTACTTTCTACAACTAGGCAGGAACACACAGAGACCCTAAAGAAAAAAGCTAAAGAACTAGAGACAGAGTACAAACATCTCCATCTGGAATTTCAAGGGAAAGAGGGTCAAATCATAGCTCTAGAAAATGAAGTGgagGTGCTTCGTAAATATAAAGGCATTGAGCAGGACGCCGAGATGCTGCTGTCAGCGCTGTCAGCGATGCAGGATAAGACCCAGCATCTAGAATACAACCTAAGTGCCGAAACCAGAATCAAACTGGACCTCTTCTCTGCCCTAGGAGACGCACGGAGGCAGTTAGAAATAGCTCAaggaaaaataatgaaacaggaTCAAGAGATTGGGGAAATGAAACAGAAGATTGCAGAAGTCATGGCTGTCATGCCAGGCATCACATACACTGTTCCACATCCAATTACACCTCAATATTTAACCAAGTTTCTCAACTCAGAGAATTACATGCTTGATCCCAGCGCATTA

Function

NR:

description
PREDICTED: macoilin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004280 True 1806 mRNA 0.45 11 41000647 41011758

Neighbor

gene id symbol gene type direction distance location
AMCG00004278 NA coding upstream 59883 40938585 ~ 40940764 (+)
AMCG00004276 slc30a1a,slc30a1 coding upstream 79173 40906392 ~ 40921474 (+)
AMCG00004277 LOC107712406 coding upstream 95914 40897450 ~ 40904733 (+)
AMCG00004267 lpgat1,LOC106607581 coding upstream 138882 40851231 ~ 40861765 (+)
AMCG00004268 ints7 coding upstream 175666 40811386 ~ 40824981 (+)
AMCG00004286 hadha,LOC102787580,LOC102203549,LOC100703423,LOC100304971,LOC106603767,LOC107594700 coding downstream 365110 41376868 ~ 41387623 (+)
AMCG00004289 LOC107593268,LOC107719402,LOC107697206,LOC107721442,LOC107690993 coding downstream 453189 41464947 ~ 41517390 (+)
AMCG00004291 NA coding downstream 531318 41543076 ~ 41550969 (+)
AMCG00004292 NA coding downstream 556651 41568409 ~ 41600974 (+)
AMCG00004293 NA coding downstream 640857 41652615 ~ 41666407 (+)
G7048 NA non-coding upstream 22328 40977999 ~ 40978319 (+)
G6850 NA non-coding upstream 801685 40148962 ~ 40198962 (+)
G6847 NA non-coding upstream 886696 40110200 ~ 40113951 (+)
G6840 NA non-coding upstream 911733 40088608 ~ 40088914 (+)
G6819 NA non-coding upstream 966324 40015267 ~ 40034323 (+)
G7078 LOC103376870 non-coding downstream 283540 41295298 ~ 41364066 (+)
G7084 NA non-coding downstream 355387 41367145 ~ 41368478 (+)
G7102 NA non-coding downstream 511295 41523053 ~ 41529308 (+)
G7101 NA non-coding downstream 593352 41605110 ~ 41606759 (+)
G7182 NA non-coding downstream 954256 41966014 ~ 41966233 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 659412 40326410 ~ 40341235 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 3152927 37832623 ~ 37847720 (+)
G6369 NA other upstream 4000489 36999357 ~ 37000158 (+)
G6328 NA other upstream 4108901 36861547 ~ 36891746 (+)
G6314 NA other upstream 4226124 36774001 ~ 36774523 (+)
G7094 NA other downstream 447818 41459576 ~ 41507231 (+)
AMCG00004304 NA other downstream 1198672 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 1677021 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 3606427 44618185 ~ 44640732 (+)
AMCG00004380 NA other downstream 4950252 45962010 ~ 45968306 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G395598 NA non-coding CI01000228 null 77394 ~ 88247 (-)