AMCG00004286 (hadha,LOC102787580,LOC102203549,LOC100703423,LOC100304971,LOC106603767,LOC107594700)


Basic Information

Item Value
gene id AMCG00004286
gene name hadha,LOC102787580,LOC102203549,LOC100703423,LOC100304971,LOC106603767,LOC107594700
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 41376868 ~ 41387623 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004286
ATGGCAGGCGTAAGAGCGGTGGGAATCCTCTCCAAGTTTGCAACCCGCAGATACGCACTTTCTACAGGTTACACATGCCGTAACTTCACCGTTTCTTCTTCCATGTTagCTCGAACCCATGTCAACTACGAGGTTAAagaggatgtggctgttatacgAATCAATGACCCAAACTCTAAGgtCAACACTTTGTCAGTCCAAATGCAAACGGAATTAAGCGAAGTAATGAATGAAGTCTGGACAGATGATAAAGTCAAGAGTGCCGTCCTCATCTCCTCCAAGCCTGGCTGCTTCATTGCCGGAGCTGACATCAAcatGATAGCGGCCTGTAGGAGTGAGGCAGAAGTGGCCAACATTTCCCAGGAaggacagaaaatgtttgagaaGATTGAGAAGTCTCCCAAACCCATCATAGCTGCCATTAATGGACCCTGTTTGGGAGGTGGCCTGGAGtttgCCATTGCTTGCCAGTACAGAATAGCAACTAAAAGTAAGAAGACAGTACTCGGTGCACCGGAGGTCATGCTGGGATTGCTTCCAGGAGCTGGAGGAACCCAGCGACTGCCAAAAATGGTTGGACTGCCCTCTGCCTTTGACATGATGCTGACTGGCAGGAACATACGTGCTGACAAAGCCAAAAAGATGAAACTTGTTGATCAACTCGTTGACCCTCTtggtCCTGGATTGAAGAGTGCAGAGGAAAGAACGATTGAGTACCTAGAAGAAGTTGCCATCCAGTTTGCCAAAGGAATAGCCAATAAGAAGATTTCTCTCAAGAAAGAGAAGGGCTTAATGCAGAAAATAACAGACTATGTCATGGGGATCTCATTTGTAAGACAGCAGATCTACAACACCGTAAAAAATAAAGTCATGAAACAGACGAAAGGACTGTATCCCGCTCCTCTGAAAATCATCGagACTGTCCAGGCGGGCATTGAACAGGGATCGGATGCCGGCTATTTAGCTGAATCGCAGAATTTTGGCAAGCTTGCCATGACCAACGAATCCAAAGCCCTGATTGGTTTGTACCAGGGTCAAGTCACGTGTAAGAAGAACCGCTTTGGTACCCCGCAGAAAGAGGTTAAGAGCTTAGCCATTTTGGGAGCAGGTCTGATGGGTGCTGGCATCGCCCAGGTCTCTGTAGACAAGGGTCTGTTCACCATCCTGAAGGACACCACAGTGGAAGGGCTGGGAAGAGGACAGCAGCAAGTCTATAAAGGgcTGGATGGCAAAACTAAGAAGAGAAGCATCACATCCTTCGAGAGGGACAGCATCCTCTCGAACCTCACTGGCCAGCTCGATTACAGCGGGTTTGGTCATGTGGACATGGTCATTGAGGCAGTATTTGAGGACATGAACATCAAGCACAAAGTTCTGAAAGAAGTTGAGGCGgttATTCCTCCCCATTGTATCTTTGCCACTAACACTTCATCTCTGCCCATCAAAGACATTGCTGCAGTTAGCAAAAGGCCAGAGAAAGTCATTGGAATGCATTATTTCTCTCCAGTGGATAAAATGCAGCTGCTGGAAATTATAACTACTGACAAAACCTCCAAGGACACGACTGCCTCCGCTGTTGCTGTTGGTCTTAAACAGGGAAAAGTCATCATTGTAGTTGGGGATGGTCCTGGGTTCTACACCACCAGGTGTCTGGGTCCTATGCTGGCCGAAGCTTTGAGAGTTCTCCAgGAAGGTACTGGCCCCAGTAAGCTGGATTCCCTCACTACTGGCTTTGGCTTTCCTGTCGGCATTGCCACCTTAGCAGATGAGGTTGGAATTGATGTGGCTGCGCATGTGGCCGAAGACCTGGGCAAAGCATTTGGGTCGCGGTTTGGGGGCGGCGATGTTGCACTGCTCAAGGCTATGGTGGAGAAAGGATTCATGGGCCGCAAATCTGGAAAAGGAAACTATGTCTATCAgcaaggaacaaaaaacaaaaatgtaaacccCGGCGCTGAAGAGATTCTAGAGAAGTACAAGATTCCTGCCAATCCTCAAGTGTCTTCAGACTCTGATATCCAGTACCGCCTCATCACAAGGTTTGTGAACGAAGCCATCCTGTGCCTGCAGGAGGGAATTCTCAACAACCCAGTGGAGGGAGACATCGGTGCCGTCTTTGGACTGGGATTCCCTCCTTGTCTTGGAGGTCCATTTAGATTTGTTGACTCCTATGGAGCAGATAAGCTTGTGGAGAAGATGAGGAAGTTTGAAGCTGTCTACGGACACCAGTTCACGCCATGCCAATTGCTTCTTGACCATGCGAAGGATGCCAGCAAGAAATTCCACAAATAGTTTCTGCGTACATTCTGATTTTAACATATCTAGAGAGTTtgctaatttaatttcacaaaaggTTTGTGCTTAAACTATGAAAACCTCTAGGCAGCTTTTAACCAAGTAAATGTATTGGATTGTACTAATTGTTTAAGACATAAATGCATAAACCTGTTTTCCAAGGTGCCTTAGATCTACTGAGTACTCAGGCACTTATGTTTGTAACCagaatgtaacatttttgttttgcactacTCTGTACAAATGTGAgggtttttctttgttgttttacaaACTCAGAGCCCTGGCCATGAAGGGATCTAAAAGCACTTGTACAGTAATGGATGGTATTCCAGTGCAGTTTCATTGTGAGgaatctgaaataaaatcaaaccttCTGCTGATGTATTTtgagatgtgtgtatatataaagaattaTCTAACAAATGGGCAGATCACATCAGGCAAAAAGGGGTAAAAGATCGAGCCCAGCTCATGGAAattctctttccattttcagAAATCACACATGCAGTACACTTTTAATTTGTGAGCTACTTATTGTGAATCCCTGGCCCTAAACTTAGAAACCTGTTCCCAAGTAGCTGTAGACATTTTCCAAGCACTTGTATAAGAAACAAGTGGTCATGGGATTGAATCATGTTGTGTTGAGAGCATTAAACCTTGGCATCAGCAGTCTGGGGAAAACCACTGATGTTTTAGACTGCCAACAGTTTGACGATGGCCATCAAAGGCCTTATCCAGC

Function

symbol description
hadha Predicted to enable enoyl-CoA hydratase activity and long-chain-3-hydroxyacyl-CoA dehydrogenase activity. Involved in cardiolipin acyl-chain remodeling. Located in mitochondrial nucleoid. Implicated in fatty liver disease and mitochondrial trifunctional protein deficiency. Biomarker of Alzheimer's disease.

NR:

description
PREDICTED: trifunctional enzyme subunit alpha, mitochondrial-like

GO:

id name namespace
GO:0006635 fatty acid beta-oxidation biological_process
GO:0016507 mitochondrial fatty acid beta-oxidation multienzyme complex cellular_component
GO:0050662 obsolete coenzyme binding molecular_function
GO:0004300 enoyl-CoA hydratase activity molecular_function
GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K07515 HADHA; enoyl-CoA hydratase / long-chain 3-hydroxyacyl-CoA dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004286 True 3040 mRNA 0.46 20 41376868 41387623

Neighbor

gene id symbol gene type direction distance location
AMCG00004280 LOC105908978 coding upstream 365110 41000647 ~ 41011758 (+)
AMCG00004278 NA coding upstream 436104 40938585 ~ 40940764 (+)
AMCG00004276 slc30a1a,slc30a1 coding upstream 455394 40906392 ~ 40921474 (+)
AMCG00004277 LOC107712406 coding upstream 472135 40897450 ~ 40904733 (+)
AMCG00004267 lpgat1,LOC106607581 coding upstream 515103 40851231 ~ 40861765 (+)
AMCG00004289 LOC107593268,LOC107719402,LOC107697206,LOC107721442,LOC107690993 coding downstream 77324 41464947 ~ 41517390 (+)
AMCG00004291 NA coding downstream 155453 41543076 ~ 41550969 (+)
AMCG00004292 NA coding downstream 180786 41568409 ~ 41600974 (+)
AMCG00004293 NA coding downstream 264992 41652615 ~ 41666407 (+)
AMCG00004294 dtnb,LOC108412184,LOC106603664 coding downstream 317487 41705110 ~ 41730436 (+)
G7084 NA non-coding upstream 8390 41367145 ~ 41368478 (+)
G7078 LOC103376870 non-coding upstream 12802 41295298 ~ 41364066 (+)
G7048 NA non-coding upstream 398549 40977999 ~ 40978319 (+)
G6850 NA non-coding upstream 1177906 40148962 ~ 40198962 (+)
G6847 NA non-coding upstream 1262917 40110200 ~ 40113951 (+)
G7102 NA non-coding downstream 135430 41523053 ~ 41529308 (+)
G7101 NA non-coding downstream 217487 41605110 ~ 41606759 (+)
G7182 NA non-coding downstream 578391 41966014 ~ 41966233 (+)
G7221 NA non-coding downstream 677874 42065497 ~ 42067725 (+)
G7231 NA non-coding downstream 700168 42087791 ~ 42089653 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 1035633 40326410 ~ 40341235 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 3529148 37832623 ~ 37847720 (+)
G6369 NA other upstream 4376710 36999357 ~ 37000158 (+)
G6328 NA other upstream 4485122 36861547 ~ 36891746 (+)
G6314 NA other upstream 4602345 36774001 ~ 36774523 (+)
G7094 NA other downstream 71953 41459576 ~ 41507231 (+)
AMCG00004304 NA other downstream 822807 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 1301156 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 3230562 44618185 ~ 44640732 (+)
AMCG00004380 NA other downstream 4574387 45962010 ~ 45968306 (+)

Expression


Co-expression Network