AMCG00004289 (LOC107593268,LOC107719402,LOC107697206,LOC107721442,LOC107690993)


Basic Information

Item Value
gene id AMCG00004289
gene name LOC107593268,LOC107719402,LOC107697206,LOC107721442,LOC107690993
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 41464947 ~ 41517390 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004289
ATGTCTAAAGTGAAAAATTGCGAGACTGTCAAAGTGGTCGTGAGATGCCGCCCATTGAACCGGAAAGAAGAGGCGACGGGCTACGAAGGCATTGTGAATATGGATGTGAAACTGGGGCAGGTGACCGTCCGCAACCCCAAATCCGCCCCGGGAGACCTGATGAAGACATTCACCTTTGATGCCGTCTACGATGGCAGTTCCAAACAAAGCGACCTCTATGACGAGACCGTAAGACCCCTCATAGACTCTGTGCTGCAAGGTTTTAATGGGACAATATTTGCTTATGGTCAGACAGGTACTGGCAAAACCTACACAATGCAGGGGGCATGGATGGACCCGGAGAAAAGAGGCATCATCCCAAATTCCTTTGagcacattttcacacacatatCTAGATCCCAGAACCAACAGTACCTGGTAAGAGCGTCCTATCTAGAGATTTATCAAGAAGAAATCCGAGACCTCCTATGCAAAGACCAGAATAAAAAACTGGAGATGAAAGAGAACCCGGATTCCGGAGTTTACATCAAGGACCTGTCCTCTTTTGTCACCAAAAACGTCAAGGAGATCGAACACGTCATGAATGTGGGGAACCAGGCCAGGTCCATTGGGTTCACCAACATGAATGAGCACAGCTCCAGGTCCCACGCCATTTTTGTCATCACAGTAGAGTGCAGTGAAATGGGGATAGACGGGGAGAATCACATCAGAGTGGGCAAGCTGAACCTGGTGGACTTAGCCGGCAGTGAACGACAAAGCAAAACTGGGGTGCAGGGGGAGAGGCTCAAGGAGGCCACAAAGATCAACCTGTCCCTCTCTGCCTTGGGAAATGTCATTTCTGCCCTGGTGGATGGAAAGAGCACCCACATTCCTTACAGAGACTCTAAACTGACCCGATTGCTTCAGGATTCCCTAGGAGGCAATGCCAAGACCATCATGGTAGCCACCTTAGGTCCCGCTTCCTACAACTACGAAGAGACTTTGACAACCCTCAGGTATGCCAACAGGGCCAAGAACATCAAGAACAAACCAAGGGTGAACGAGGACCCCAAAGATGCCCTGCTGAGGGAATTTCAGGAGGAGATAGCCCGGCTCAAGGCCCAGCTGGAGAAGCGAGGTATGCTGACCAAGAAGAGGAGACGGAACAGCCGCAGGCTCAGGAAGAGCCTGGATGGAGAGGAGGTCACGGACTGTGAGGAGGAAGAGATTGTGGACAGCATGGAGAAGGATGTGGAGGACTACATGAAGGAGCAGAAGGAGAagctggagctggagaaggCTGCCATCCGGGATGACCACAGTTTGGTGGCAGAGGAGAAGCTGAAGCTGCTGGATGAGAAGGAGAAGATGATGGATGACCTGAAGAAGGAGCAAGAGGCCACGGAAATGCTAACTGCTAAATTCAAGAGTCAAGCTATGGAGAGCAAGTTGCTGGTGGGAGGGAAGAACATCATCGATCACACCAACGAACAGCAGAAGATGCTGGAGCTGAAGAGACAGGAGATTGCAGAGCAGAAGCGGCGCGAGCGGGAGATGCAACAGCAGGTGCTGGTGCAGGACGAGGAGACCGTGGAACTGAGGGAGACCTTCTCCTCCCTGCAGCAGGAGGTCGAACTCAAGACGAAAAAGCTGAAGAAGCTGTACTCTAAGCTGCAGGCAGTGAAGGCTGATATTCAGGACCTCCACGACGAGCACGTGAGGACCAGGCAGGACCTGGAGCAGACCCAGAACGAGTTGACCCGAGAGCTCAAATTCAAGTACCTGATCATTGAAAACTTCATTCCTccagaggagaaaaacaaaattatgaacAGACTGGTCTTTGACGCCGAGGAAGACCAGTGGAAATTCCAGCCCCTTGTCCCATCTGGAAAcaaAAATATTCAGATGAAGAGAAGGCCGGCGTCTGCAGTTGGCTACAAGAGACCAATCAGCCAGTATGCGCGGGTTGCCATAGCAATGGGAGCTCACCCTAGATACCGGGCTGAGAACATCATGTTTCTGGAGCTGGACATCACCCCTCCTACCGTGTTCCACTTGGACTTTACCAAAGCTCAGCCGGAGCACGACCTGGCGCTCCAGCTGGGCCGTGATCTTATGCTAGACAACGCCGCCTACAGGGAGCGGGCCGCAGCCAACCGCGTCAGGAAGTCCCGGTCGTGGCAACGTAttgagaaaaattaa

Function

NR:

description
PREDICTED: kinesin-like protein KIF3C

GO: NA

KEGG:

id description
K20197 KIF3C; kinesin family member 3C

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004289 True 2184 mRNA 0.52 9 41464947 41517390

Neighbor

gene id symbol gene type direction distance location
AMCG00004286 hadha,LOC102787580,LOC102203549,LOC100703423,LOC100304971,LOC106603767,LOC107594700 coding upstream 77324 41376868 ~ 41387623 (+)
AMCG00004280 LOC105908978 coding upstream 453189 41000647 ~ 41011758 (+)
AMCG00004278 NA coding upstream 524183 40938585 ~ 40940764 (+)
AMCG00004276 slc30a1a,slc30a1 coding upstream 543473 40906392 ~ 40921474 (+)
AMCG00004277 LOC107712406 coding upstream 560214 40897450 ~ 40904733 (+)
AMCG00004291 NA coding downstream 25686 41543076 ~ 41550969 (+)
AMCG00004292 NA coding downstream 51019 41568409 ~ 41600974 (+)
AMCG00004293 NA coding downstream 135225 41652615 ~ 41666407 (+)
AMCG00004294 dtnb,LOC108412184,LOC106603664 coding downstream 187720 41705110 ~ 41730436 (+)
AMCG00004295 NA coding downstream 312349 41829739 ~ 41852260 (+)
G7084 NA non-coding upstream 96469 41367145 ~ 41368478 (+)
G7078 LOC103376870 non-coding upstream 100881 41295298 ~ 41364066 (+)
G7048 NA non-coding upstream 486628 40977999 ~ 40978319 (+)
G6850 NA non-coding upstream 1265985 40148962 ~ 40198962 (+)
G6847 NA non-coding upstream 1350996 40110200 ~ 40113951 (+)
G7102 NA non-coding downstream 5663 41523053 ~ 41529308 (+)
G7101 NA non-coding downstream 87720 41605110 ~ 41606759 (+)
G7182 NA non-coding downstream 448624 41966014 ~ 41966233 (+)
G7221 NA non-coding downstream 548107 42065497 ~ 42067725 (+)
G7231 NA non-coding downstream 570401 42087791 ~ 42089653 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 1123712 40326410 ~ 40341235 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 3617227 37832623 ~ 37847720 (+)
G6369 NA other upstream 4464789 36999357 ~ 37000158 (+)
G6328 NA other upstream 4573201 36861547 ~ 36891746 (+)
G6314 NA other upstream 4690424 36774001 ~ 36774523 (+)
AMCG00004304 NA other downstream 693040 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 1171389 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 3100795 44618185 ~ 44640732 (+)
AMCG00004380 NA other downstream 4444620 45962010 ~ 45968306 (+)
G7999 NA other downstream 6629498 48146888 ~ 48147156 (+)

Expression


Co-expression Network