AMCG00004292


Basic Information

Item Value
gene id AMCG00004292
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 41568409 ~ 41600974 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004292
ATGTTGTGTCTGAAGGTTTCTCGTGCTGTTTGGTTGACAGTGCCCTCCAAGCTCCCGTCCCAGCCCTCTTCGCCACAGTCCCGCTGCCAGTCGCCCTCCGTCCCTGCGAGTAAACTCATCTCGCCGTCACAGAAGCATACCAAAAAGGCTCTGAAACAGgccctgaagcagcagcagcagaaaaacCAGCGCAGACAAGGAGGCTTGCCCACAACATCCAACCCCCGGCTCATCCTCGCAACTGTCAGAGACATGGAGGACCAGACGGCTTCCAAAACCGCATGGGAAGTTAAGCAGTCGGAGAGACGCTCCACCAGCCCCCAGAACTCCACCTCCAGCTCCTCTTCCTCAGGGAAAACTGACCAGTCCCCCTCGGCCGCAGCCAAGAAGGTGTCTCAGAGATCAGACAGGCTGAGTGCAAGGCAGCTGAAACGTACAAAGTGTGCAGAAATCGACGTGGAAACTCCAGAATCCATCTTGGTCAACACCAACCTCCGGGCCCTAATAAACAAGCACACGTTCTCCGTTCTGCCCCCGGAGTGCCAACAGCGACTGCTAGGCCTTCTTCCTGAGGTCGACAGGCAgGCCTGTGCAGATGGAGTGCTGAAACTGAGCAGCTCCGCCCTGAATAACGAGTTCTTCACATCTGCGGCCCAGTCCTGGAAAGAGAGACTGGCTGAGGGTGAATTCACTCCAGAGATGCGTCTCAGGATACGACAGGAGATCGACAAGGAGAAGAAAGTGGAGCCTTGGAAGGATCACTTTTTCGAGAGCTACTACGGCCAACAttctgGACTCACTATAGAGCAATCCAGAAGACTGACAGCAGCTGCTGCCACTCCACAACCAATCAAGCAGCCAGTGGCCTCCCTCCCATCTGTTCAGGTGTCCCCAGTGAAACCCGAGGCAAAGACTGTGCCCAGGGAGGAAGCCCAGGTCAAGGAAAgtaaaaaggaagaaacaagAACCTCTGTAACTCCTGAAAGCTTAAAAACAGAGCCCGCTCTTAAAGAACCCACAGCCTCAACGAGAGTCGTTCTGGAGAAGCCCCCCAAAAATTCTGAGACTGAAACATCTTCAGCAGAGCCTCAGCAAATGGTGATATCTGCACAACTAGAAAAGGGGGAAGCATTGAACACCAAAACGATGAAAATGTCTGAacagacagaggaggaggagtccATGGCACACCTGTCCCCCCAGAGGTCTCCAGAGCCCAGCCGGGACAAGAAGGAAGTTGGCACCACAGCAATAAGACTCCCTGTGAGTGACAGTCCTAAGAAGGTGCCAGGAGCAGAGCGGATGGAGGTAGACCAGGAGGGACTGAAGAGGAAGTCACCCAACGATCAGGACGAAGTGTTGCGGGGTCCAGAGAAGAGGCCTCGGGTTTCAGAGCAACCAACGTTTCTTACGCCATCCAAAAGCTCCCCCGAGGGCAAGGAATGCACCCCAGAGCCGAGAGTGCCACCGCTCAAGATTCCCGTGTCGCGGATATTACCAGCGGCCGCCGCTGCGGGTCAGGTCTCTCCCAGGGCCCCCTTTGCACCCCCCTTCCCCAGTCCAGGGCGAACTGGGGCGCGTACTTTGGCCGACATCAAGGCCAAAGCCCAATTTGCCAGAGCCCAGCGAGCTGCAGCCGCTGCAGCCGCAGCCGCGGCGGCCGCTGTGTCCTCTGCGGGGGGTGCTGTGCCGGGCCCCGGGccagggggagggggtgggaagCCTGGGGGAGACGGCCACGGTGCAGCAGTGGCTAGCGAGTCCATCACTGCCTCACCAGAGCTGGGGAGtgctggaggaaggggagctgCGGGAGGGATTCCACCTGCCAGTCCAGAGGCCCAGATCAAGAGCTCCTCCTgcccagtcagtgactctggaGCACAATTACAGCAAGCCACCACCTCTGAGGTCAGAGCCAGCGGCGAGGCTTCAGCCCCCAGTTCATCGTCTGCGAGTTCTGCACAGGCCGCCTCACCTTCCGTGACATTTTCCAACACAGGAAACCGTTGTAAAGCATTAGTGTCAAATCCCTCAGCTCCACTCTCTGTTACGTCCTCATCCCAGACCTCATGTTCCAACAAAGCTCTCGGGAAACAACAATCAAAACCTGCCTCTTCTGCCCAGGCGATGAAACAAACAGGTCCAGACACAGAGGGGAGAAAAACAGAGGGTGACAAACATGGAAAAGCAGCAGTTGAGGAGCTGAAAGCTTGTTCCGCTGCGGGAAAGACAGAGTCTGAACTTGTCCGGACACCATCGAACCCTCCCACGCCTGTAGGCACGCAGCCTGTCACACTTTCAGCCTCTGCCACACTACCCACACCTCCACATTCGATCATCTCAGTCACGCCTCCAGCTTTGAGCAGTGTTTCGCCTACGTTAAGTCAAAAGCCACCAGAGAGCTCTCTGACAGCCGGGCCAGCAGCAAAGGCCAGTTCGTCTATTCCGGCCAACAACCCCCTGGTCACCCAGCTGCTTCAAGGGAAAGAAGTCCCACTTGAGCAGATCCTCCCGAAACCTCTCACAAAGATAGAGGTCAAGCCCATCATCGTGGCCccgggagagaaagggagaacaTGTCATGCCACTGCGGCCCTGGATTCTGGGGCAAGCAGAGAAAGTCAATTCCGCACATGCCCAGATGTTGCTGAAAAAACAAGTAATCTGCATCGGCCGTTAGTGCCTAGTCAGCTATTCCCAGCAAGGACAGTGAGCGTGGAACTTGCCCAACATCAGCGGGAAATGCTGAACAAGGCCACCCAAGAGCAGATATTACAGACCCTTATGCAGCGAGCGCAGAGTCAGCAGTTTGTCTCTGGGTCTCAGCCTTTGCAGCGTGAGATGTGTCAGTTTGGCTACCAGATGGAGTACTCCAGTGGTCAGAGGTGTGCCCTGGGATTCATGGGCCGGAAAAGACTGTCCAAGCCTGCCATGTCAGGGCACTACCTGCTCAACATCTCAACGTACGGGAGAGGATCCGAGAGCTGCAAACGTGCGCACTTGGCCATGCAGGCGCCCCTGGCCAACCTGAAGAAGGAATTCGTGGAGGGTGAAAGTGGCccagaggaaggagaggagcCACTCAAAAGCTCTCACGACTCCTCAGCGAGTCAGTCTGACTGTACAGGAGTCAAGAAAGAGCATCAGGGACCCCTGGATGGctcccacactgcactgagccCAGGTCACACACAGCCCAGCCAGTCGCCTGACTTGAATCGCAGCCGCAAGATAAAGTCAGAGTCCCCTTCCTCCGGACAGTTGCCAGACAGGGAGGACGGCTCGCCTCCCGTAGACGGGAACGATGTTGCAGCGACACCCAAAGAAACTGACCAGGGGGCACTGCCACGTGCCGCGCACCCTGAGGTTGGCAATAACCCAGCAGGTAACTCAGAGCCATATCGAACGCCAGCCCAGGCAGACATGGGCCTTCATCGCCGGCAAGCTCCTCTTCATCACCAGCAAAAAATGTACGAGAATCCCATGGTTGGGCGGCTCTACGGTGGCATGATCAACATGTCGTCGTCTCATACACTCAACCACAGCTCAGCAGGGTCGGGCAACTCCCCGGGCTACAGCCCAGTGTCGAGCACTAGTGGCAGTGTCATGTCCTTTTCGGTGACTGTGACCACCATACCTGCTAACCATCCATTAGACCATGCCAACCATGGCGACAGCGCTCCTGGGCAGCCGTTCACTGAGGGCTCAGCCATGGACGACTCCCCATCCAAATGCTACTGCCGGCTAAAAGCCATGATCATGTGCAAGGGTTGTGGGGCATTTTGTCATGACGACTGTATCGGCCCTTCCAAACTTTGCGTCTCATGCCTAGTGGTGCGatga

Function

GO: NA

KEGG:

id description
K11471 ASXL; additional sex combs-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004292 True 3846 mRNA 0.57 8 41568409 41600974

Neighbor

gene id symbol gene type direction distance location
AMCG00004291 NA coding upstream 17440 41543076 ~ 41550969 (+)
AMCG00004289 LOC107593268,LOC107719402,LOC107697206,LOC107721442,LOC107690993 coding upstream 51019 41464947 ~ 41517390 (+)
AMCG00004286 hadha,LOC102787580,LOC102203549,LOC100703423,LOC100304971,LOC106603767,LOC107594700 coding upstream 180786 41376868 ~ 41387623 (+)
AMCG00004280 LOC105908978 coding upstream 556651 41000647 ~ 41011758 (+)
AMCG00004278 NA coding upstream 627645 40938585 ~ 40940764 (+)
AMCG00004293 NA coding downstream 51641 41652615 ~ 41666407 (+)
AMCG00004294 dtnb,LOC108412184,LOC106603664 coding downstream 104136 41705110 ~ 41730436 (+)
AMCG00004295 NA coding downstream 228765 41829739 ~ 41852260 (+)
AMCG00004297 LOC106603656 coding downstream 295277 41896251 ~ 41916088 (+)
AMCG00004296 NA coding downstream 348397 41949371 ~ 41964474 (+)
G7102 NA non-coding upstream 39101 41523053 ~ 41529308 (+)
G7084 NA non-coding upstream 199931 41367145 ~ 41368478 (+)
G7078 LOC103376870 non-coding upstream 204343 41295298 ~ 41364066 (+)
G7048 NA non-coding upstream 590090 40977999 ~ 40978319 (+)
G6850 NA non-coding upstream 1369447 40148962 ~ 40198962 (+)
G7101 NA non-coding downstream 4136 41605110 ~ 41606759 (+)
G7182 NA non-coding downstream 365040 41966014 ~ 41966233 (+)
G7221 NA non-coding downstream 464523 42065497 ~ 42067725 (+)
G7231 NA non-coding downstream 486817 42087791 ~ 42089653 (+)
G7272 sod2,LOC102787761 non-coding downstream 732451 42333425 ~ 42336643 (+)
G7094 NA other upstream 61178 41459576 ~ 41507231 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 1227174 40326410 ~ 40341235 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 3720689 37832623 ~ 37847720 (+)
G6369 NA other upstream 4568251 36999357 ~ 37000158 (+)
G6328 NA other upstream 4676663 36861547 ~ 36891746 (+)
AMCG00004304 NA other downstream 609456 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 1087805 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 3017211 44618185 ~ 44640732 (+)
AMCG00004380 NA other downstream 4361036 45962010 ~ 45968306 (+)
G7999 NA other downstream 6545914 48146888 ~ 48147156 (+)

Expression


Co-expression Network