AMCG00004296


Basic Information

Item Value
gene id AMCG00004296
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 41949371 ~ 41964474 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004296
TGCATTTGTGTTTCGTGTCTGACGTGTGCACCTCTCTGCCCACAGGCTGCTCTTGCAGGAGGGACGACAATGGTGATTGCTCACGTCTTGCCAGACAAGGACACCTCTCTCCTGGAGGCCTATGAGAAATGCCGAGCCCTGGCTGACCCCAAAACCTGCTGCGACTATGCTCTGCACGTGGGGGTCACCTGGTGGGGGCCGAAGGTGAGGTCTGAGATGGAGACCCTGGTGAGGGACAAGGGGGTGAACTCCTTCCAGATGTTCATGACGTACAAGGACATGTTCATGCTGCGGGACAGCGAGCTCTTCCAggtgttccagagctgtaaggACATCGGGGCAGTGGCGCGCGTCCATGCGGAGAACGGAGAACTGGTGGCCGAGGGTGCCAAGGAGTGTCTGGATCTGGGCATCAGTGGACCAGAGGGCATTGAGATCAGCAGGCCGGAGGAGGCTCATTGTCCCATCTACCTGGTGAATGTGGCCAGCATGTCTGCGGGCGATGTTGTGGCCACAGCGAAGATGCAGGgcAAGGTGGTTCATGCAGAGGTAACCACAGCCCATGCCGTGTTGAACGGGCTACACTACTACCACCAGGACTGGGCCCACGCCGCCGCCTACCAGAAAGCGATGGGCAAGGAGGACTTCACCAAGATCCCGCACGGAGTGGCTGGAGTCCAGGACAGGATGAGCGTCATCTGGGAGAGAGGAGTGGTCGGGGGAAAGATGGACGAGAACCGCTTTGTTGCGGTGACGAGTTCCAACGCCGCCAAGATCTACAACCTGTATCCACGCAAGGGGAGGATCATCCCCGGGGCGGACGCAGATGTGGTTGTgACCATCTCCGTGAGCACCCAGGTGCAGGGCGGCGATGCCAACTTGTATGAGAACCTGCGCTCCCACGGCGTGCCACTGGTCACCATCAGCCGCGGGCGCCTTGTCTGTGAGAACGGGGTATTCATGTGCGCAGAGGGAACGGGCAACTTCTACCCACTCAGGACCTTCCCTGACTTCCTCTACAAGAAGATGGTACAGAGGGAAAAGtgcCAAATCCTGAAGCCTGTGGACCGCACTCCTTATGTAGGCGACGTGGCAGTGGTGCACAACTCCGGGAAGAAGGAGGCCGGGCCACCAGACGGCGACACACCTACCAGGCCCTGCACTCGTCACGGGGGCATGCGGGACCTGCACGAGTCCAGCTTCAGCTTGTCTGGTGCCCAGGTTGATGATCATGTTCCAAAGAGGTCTTCAGCCAGGATCCTCGCTCCACCCGGCGGCAGGTCCAGTGGCATTTGGTAACTGTGGAAACTTCCATCTCAGGACCAGACCCAGCAGCAGAGTTCAACAAAACATCGCTACTGGCCCACAACACCGAAATCAGCCCGTCTTCGGTAAATTAAAGACGAACCAAGAAAACTGCACTGATTTTGATACCAGTTGTGCTTAAAATATCGCAGACACACACTTTACttagtacaaaataaaatcgaACAAGaaacagcactttttttttcctaattggTAACAAACACTTGAATTAGCTGCTGAGGGACCGATCAGAACATTGTGTATTGGGATGTATGCCTGCTGGTAGTGTatgtggtttaaaaaacaaaagaacaacaaaaataattataaaaaggtCAGACTGTAAAAATTACaagattaatttgttattttaagtaaCAAATAAGTTTGTAATTTGATCAGGTTTTAGTGcgaaagcattttatttaaaaatgaaggaCTGAGGACAAATGAAGTAAATTGTGTGTATTAGGCCACGCAACCCTTTTCCTTGATGGCTTGgcactaagaaaataaaactgttgaaTTTGTCTGAAACCAGATTTGATAAAACCAGTACAAATTTTTGTTTGGGTGCTAAAGTATGTGTTGGCTGGGGTTATTTAACATTACTAGAAGCAGAAGAAATACATAGTGCTATAGATGTAGACTAGCTATGATACAATGTGCTTTTTGTCATGGTGTCTTCTTGTTGCTCCCGTTGCCTCAGATAGGTCTTAAAGAAGTGGAACAAATTTAAATTCATGTCATAAATACTCGATGAGAATGTCAGCcaggaaaacagacaaaacGTTTATTTTGTGATGAGCTGCGTTGAGCCCCTTATTTCAAATGTCAGTGTAAATCAGCAGATCATGCCCGCAAGTCCTCCCCTTTAATACCAATTTCTCACATCCTGTCAGGATGCAAAACACCAGATTAAGTGTAATGCAAAGAAGCAGTCAAAACTGAAATCTATAGCTGTATTTCCTTGATCATGTTTTTTATCATTGTGAATGGAGCATCAGTATGGCCATGAACATTTAGTTAGAATTAAGAAGTTTCAAATAAAGGGGGTGGAAGTTAAGCTTGCCCTTTTCTGCTGCAGACGAATCCCATTGTTAGACTCAGACTTACTGCCTCCCTGGTGTGGGATTGTTAGTAAAGTAAGTATTAAAGAATAGTAACTTAAGAACATTCCATATCAGTAGTGTAAAGTGCAGTCTTCTTAATTATGTCTCATTAATACAGAAGACTTTCCTTGTTACAAATGTGTGAAGAAGTCTGGAGAATTATCAATCGCTTTTGAAAGCCGTTGGAGGTGTGTGAACTGCGAACGAGTCAAGGGGAGTCAAAGAGCAGCAGCAACTGAAACACGTTGATCAGTCCCATCTCCACACTGGTGGCTCCATTATATAgaatgctacattttatcttttttaattttatttgttttattaaagatgtTTAGTTCCCCTCCTTCCTCGTATTGTTTTACTACCAGTGAAGAGGTTACAGTTttctatatactgtattttcccATAGATATTCTCTATTGACACCTCCTGTCATCCTGGGAGACTCCTCTGGCATCAGACTGATGAGTCTAAAAGTCCACAAGGCATCAACCATaaaccttaataaataaaactaagcTCTATTTTAACGGTGGTCTTAAACTGTGACACATGAATCTGTTGGACTACACCAAGAAAAACACTTAAGTGTACAATCAATTGTAACCCCACATTATGCTGAAGAaagtacagctctggaaacccATCTGGCTTCATAGTAATGGCCACAAGAGGAAGCCAGGGGCCCAAAGTACCTTGATTGTCCTCTCCTCACCAATGTGAATCCtggtgtaatttgtttttaacatgttcTGTTCCTTTTTCTGTCTAATTTGTCTGCGAAAGagtttaatattatttgcaCATTTCCTGTAAATTTTGGAAATTGCCCTGTTCATTGCTTTTTAAACTCTGATGAATCACCACAAGGCAGAGTTCAGAGATGGACTTCATAGCATGAGTTTGGAAATTCCACTATTGTGAATTAATTCTTCTATTCAAATCCTGAattttattgtttacattttatctcCACAAACATATGATTACAATTATATTGTCATTTGAACTTTACTGATAATTAATGTTTAGCTGGAATTAGTTTCCAAGAAACACATAAACAGAAACACCTAGAGTCTTACGTagagatgtttttttcagtGCATGGGCAAAAAGGCACAGTTTTTACTGTTTGAATTGGCAAAGTTTTATAACAGGCTTCATTGGGATAGAGCACAAACTAACCCAATAGtttgaagaaaaacatcttCCTGGCACAGCATCTAGTTTTGGGATGGCACAGTGGACGTTCTGAAATGATCAGTATTCCGCTGGGGATCACACGGAGACTGACAACGTGGCTGAACAGTATTATAAGCAAGTGTAACTCctgctgtattgtattttacacacaACTGAATAGTCCGAAATGGATAACTTTGGATATTTGAATACTTGTAACCTAACACCATTGTAATGTCACAGCTGTTATAATACTCTGGAACGACTTGCACATAGCAAGTCGGCAGCATTGCTTTCACTTCACGATCTGTCTGTTGACCTCTCTGCCAGCGCAGTCTGTGTCCAGTAACGTGGGTCTTCAGAAACTCTAATGTGTGCACTTTGGTTTCACATTGAGTGTTCAGTGCCGGCAATGTTTTTTAAGTGGTTAAATGAAGCCTAAGTACAACATGCACCTGACCGGCTCCAGTCTCTGTTGACCTCCGTGTTCTTCCTTAACGTATAATTGTGAACGTCGCAGCCTCACAGATCTCTTCAAAGACTCTGGAAAACGATCACTGTATCTCACATTTTTTGATGCACAATATCTGTATTTAAAGCTGTTGTGCTGAAAAGAAACACTTTTTCTTCATAGGTACTATATGCAACAACTGCCACCATGCACTGTAATATCTTTCCAGAAAGACACTGCAGTATTTTCACCTGCTGTCCTTGGAAATGGCCATTTGGGAATGATTGCCCTGATGTGGCAGATTGAAAATACTTCCTTGCATAATGTTACTTCTGAAGTGTGGTGGGCTTTTGTCAAACAGCACTGCTGCTTATGATTATTCCAGGAAGTACATGTTGCAAAACCCCCGTCTATTCTGGGTGGTTACACTCAAAGTATTAATGCTGATTAAACTGCATGGTTTGACTAGGAAAACACTGACAGTTTTATGATTCAGTTccttttatatgtttttttggatgactttcaatttaaaaaagtttaaacatgaaatatttatatattgctttgaaagtttttacatttgtttattgaagTATGTAGCTCATGAATTGTTCTGTAGCCATCGTTCTCATCACCATTGTCACAATAGCCGATAGCAAGCAAGTGCATGAGCATTAAACTTCTGTGTTTAAATTGGTGCtgaaaggtttttcttttttttttttatttgttatttttaaaaaggcacttTGTGAAAAGGTTTGTGATTGTATGTATCTGTAGAGACTTGTGTTGAAAGGTGAACTTTAacaaatggtttgtttgttatcACATGAATGagtgcaaaataaaaccacatcGAATTCTCAAA

Function

GO:

id name namespace
GO:0006208 pyrimidine nucleobase catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG:

id description
K07529 DPYSL5, CRAM; dihydropyrimidinase-like 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004296 True 4930 mRNA 0.43 10 41949371 41964474

Neighbor

gene id symbol gene type direction distance location
AMCG00004297 LOC106603656 coding upstream 33283 41896251 ~ 41916088 (+)
AMCG00004295 NA coding upstream 97111 41829739 ~ 41852260 (+)
AMCG00004294 dtnb,LOC108412184,LOC106603664 coding upstream 218935 41705110 ~ 41730436 (+)
AMCG00004293 NA coding upstream 282964 41652615 ~ 41666407 (+)
AMCG00004292 NA coding upstream 348397 41568409 ~ 41600974 (+)
AMCG00004299 mapre3b,LOC107392001,LOC100704238 coding downstream 46211 42010685 ~ 42024740 (+)
AMCG00004298 LOC104961504,LOC106608390 coding downstream 64903 42029377 ~ 42045091 (+)
AMCG00004301 NA coding downstream 83169 42047643 ~ 42065411 (+)
AMCG00004300 NA coding downstream 105054 42069528 ~ 42083842 (+)
AMCG00004303 NA coding downstream 125397 42089871 ~ 42098322 (+)
G7101 NA non-coding upstream 342612 41605110 ~ 41606759 (+)
G7102 NA non-coding upstream 420063 41523053 ~ 41529308 (+)
G7084 NA non-coding upstream 580893 41367145 ~ 41368478 (+)
G7078 LOC103376870 non-coding upstream 585305 41295298 ~ 41364066 (+)
G7048 NA non-coding upstream 971052 40977999 ~ 40978319 (+)
G7182 NA non-coding downstream 1540 41966014 ~ 41966233 (+)
G7221 NA non-coding downstream 101023 42065497 ~ 42067725 (+)
G7231 NA non-coding downstream 123317 42087791 ~ 42089653 (+)
G7272 sod2,LOC102787761 non-coding downstream 368951 42333425 ~ 42336643 (+)
G7278 NA non-coding downstream 400394 42364868 ~ 42365654 (+)
G7094 NA other upstream 442140 41459576 ~ 41507231 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 1608136 40326410 ~ 40341235 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 4101651 37832623 ~ 37847720 (+)
G6369 NA other upstream 4949213 36999357 ~ 37000158 (+)
G6328 NA other upstream 5057625 36861547 ~ 36891746 (+)
AMCG00004304 NA other downstream 245956 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 724305 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 2653711 44618185 ~ 44640732 (+)
AMCG00004380 NA other downstream 3997536 45962010 ~ 45968306 (+)
G7999 NA other downstream 6182414 48146888 ~ 48147156 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location