AMCG00004297 (LOC106603656)


Basic Information

Item Value
gene id AMCG00004297
gene name LOC106603656
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 41896251 ~ 41916088 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004297
CTAGCAGGGCGCCCCAGCAGCAGCCTCAGACCTACAATCTAGTGGCTCCACAGGCCTGGGATGCAGCATTTACCTGGCAGAGAAAAGAGCCAGACTTGTTGCTGTGATGAATGCGATGGACGAACCTGCAGGGAACGAGGCacagaaggaggaggaggaggtggtcgCCAGCCAGCTCCCTCCACAGCAGCACACGGATCCAGCCTCACCCATTGTGGCCACCACCCCCGAGCCCGTCTCTGTGGAAAGTGTAGACAAAACCATCCCCAGGTCAACAGACGTGGAACCCGAATACGAGGACGGCCGTGGCTTTGGGATTGGGGAGCTGGTGTGGGGGAAGCTGAGAGGATTCTCGTGGTGGCCAGGCCGCATCGTGTCCTGGAGGATGACTGGACGGAGCAGAGCTGCCGAGGGAACCAGATGGGTAACGTGGTTCGGTGACGGCAAATTTTCAGTGGTCTGTGTGGAGAAATTGATGCCTTTGAGTTCATTCTCTAATGCCTTTCACCAGCCATCTTATAACAAACAGCCCACATACAAGAAAGCAATCTTCGAGGTTCTGCAGGTGGCTAGCAGCAGAGCAGGAAAGATCTTCCCCGCCTGTCCCGACAGCGACGAGTCCGACACTTCCAAATCAGTGGACTTTCAGAACAAGCAGATGATTGAGTGGGCAATGGGAGGATTTCAACCAACTGGGCCAAAGGGCTTGGAGCCCCCAGAAGATGAGCGCGATCCCTACAAAGAAGTTTACACTGATATGTGGGTGGAGCCGGAAGCAGCAGCCTATACCCTCCCTCCGCCAGCCAAAAAACCCAGGAAAAGCACTGCAGAAAAGCCCAAGATTAAGGAGATCATAGACGAGGGGACCCGAGCCCAGGCTGCCATTAAAGAGGATCCCTGGAACTGCTACATGTGCGAAACCAAGGGCGTCTATGGGCTGCTGCAGCGGAGAGATGACTGGCCCTCCCGCCTCCAGCACTTCTTTGCCAATAACCACGACCAAGATTTTgACCCACCAAAGCTATACCCCCCAGTGTCCGCTGAGAAGAGGAAACCAATTCGCGTCCTATCGCTCTTTGATGGTATTGCAACAGGTCTGCTGGTGCTGAAAGACCTTGGGATTCAGGTGGACCGGTACATTGCCTCCGAGGTGTGTGAGGACTCCATCACTGTGGGAATCGTGCGACACCAGGGCCGGATCATGTACGTGGGAGACGTGAGGAATGTCACGCGCAAACATATACATGAGTGGGGCCCCTTTGACTTGGTCATCGGGGGAAGCCCTTGCAATGACCTCTCCATCGTGAATCCAGCTAGGAAAGGCCTCTATGAGGGGACGGGCCGTTTGTTTTTCGAGTTCTACCGGCTGCTCCACGAGGCGCGCCCAAAGGAGGGAGACGAGAGGCCCTTCTTCTGGCTGTTTGAGAACGTGGTGGCCATGGGCGTCAGTGACAAGAGAGACATCTCCCGCTTCCTCGAGTGTAACCCAGTGATGATTGATGCCAAGGAGGTCTCTGCCGCCCACCGAGCACGTTACTTCTGGGGTAACCTTCCTGGTATGAACAGGTTGGTGAGAGAACGACCCCTCACCGCCATGAACAATGACAAACTGGATCTGCAGGAGTGTCTGGAGCATGGCAGGACAGCCAAGTTCAGCAAAGTGAGAACCATCACCACTCGGTCTAATTCTATCAAGCAGGGCAAAGACCAGCACTTCCCCGTCTACATGAACGAAAAGGAAGACATTCTGTGGTGCACTGAGATGGAGAGggTATTTGGCTTCCCTGTCCATTACACAGATGTCTCCAACATGAGCCGCCTGTCCAGGCAGAGACTCTTGGGACGATCCTGGAGTGTCCCAGTCATTCGCCACCTGTTTGCACCACTGAAAGAGTACTTCGCCTGTGTTTAGAATCCACacttgcagaaaaaaaagaaaaaaaaacaaacacaagaactgatatttaacaagaaacaaatgataaaaaatatgaaattttaCTCTGATTatttacaagaaacaaaatacatttaaagtagatgttttacataatttcttgtattttaaatgtcattcttTTAtcctatttaatttttttaatgtcattttaatttttagcAATGTTCAgtaaatttttaaaaattgattttcGTGTGTAAGCTGTACTTGAGGCAAGGCTTTCTTTTTACAGCACTGAGACATGTCTGATGAGAAGGACTGAGACCTACAGAACAGCTGAAAGCAATGACCTTCCTTAAgatgcacatatatatactgcatgAATGTATGAGCACGTGTATATGTGTGCGTATTAATTTGGCAATCATTGCGGCCTGGTCTTGAAGAATAGGAGCACAAGCCAGGGGGCCACCACAAAATGCTATTCACTTCCAGTTGCTGAGCCTTACAGAATAAGGAACCAGTcatgcatatgtttttttacagtttttatggTTCTGTCCTAAGGAATCCTTGGAATCAGAAACAACCATTCACTTATACCTCTcgtttacagtttatttaaataacttaaaaggTACTACTGTAAAATGGTGACTATATTATGGTGCTTTTAAAAGACTACGATGATAAAAAACATCCGCTTCCATGTGGCCTTACAACTTTGTCTGAACAGGGTTGTGATGACAGATGCAAAGgagtttatttttgctttctttgtcttttttttgtcatggtGAAGGGCGTTCAGGTGACTTCTGTGTGAGAAGTTATACAATGCAATAAGTTGTATATGAAGTCACTGTAAACTAAAGCCTAAACGGGCAgagaaagcaaaagaaagaacggaagaaagaaaaagaaaatgcaaataatctgccattactgtattttttttctaccaCAGCTTTTATACAGAACTTACTGGTGCTTTTCAATACTTTGGCCTTATCTTCTCAGGCCACACCTATGGCAGCACAAATGAACCTAAAGCCAATCAAATGGTTAGCGATGTTTTTTCGTCATCCTAAAACCTTGAGATCACAGACTGCGGTGAGCTGCTCATGCAGTTTCACTCAGACTGATGTCATTTTACTGTACAACTCTGCGGGAGTGGGGACTGAGGGCAGGCCGTTGTATAGCCAATTATATTCACCCTTCAGCCCCTGCCTCTGCAAGCTTTATTCAGTCAGGtgcaaataacaacaacatggTGCAGCTTCGCATTGCTGTTCTGCCTTTTTATAGGAGTTTTTTGCTGTATTATCAGCTTTGCTTAGcagttttgtatgtatattttctttgtccACTTTATCTTCCCCCCCTCCCTATccttgagtatttttttttattggtttctttgttttttgtttcactttatgATGTGAACTATTTGACCCTTGTAAGTACTTTTGGATCATGCTAGGGCTGTGCCAATGGATAAGGAAGAAAAGGGGTTCGTTGATGCTTATTTTTCTAATCAAATTCACAGAAGAGGATCAATGGTTTAAGTAGAGAAGTGGACGTGTGTATGAAATCACCCATCCACACCCACAGCAGCAAAAGTAAAATGGAACCCCTTCTCTTTTCATATCTTCCTCTACTTTAGGATAGGATTTGTCACTATATAATAGTTGGCATATCACGATGAAACTAAATATGTGCAGCATGTGGGACACACATGGGAGAAAGGAACGGCTTTAGATATTGTGTAGCTGAGCTTTAGGTTTTCAGTCTATCCCACTGCGCGTCTTGCAGCTGCTGTAGTATGCTCTGACCTGCCTGCCATGCTCAGTGCACTGTCACGTGTTTCTCTATGGTTCCTGTGGTGTCCACAGCTTTCCAGAAATGGTGGCATTTAGGACACCCTTGGTGcacaaaacttaaaaacaaatgcacacgtAATAGCCTTTTTCAAAAACACCTGTTGGGAGCAAGGATTTAAAAGCCAGCGTAAGAATGCACCGGGGGGGCAGAGTGTCATCCTGGTGACCTTAGACGTGTTTTTATGAAATGCAGATGAACGTTTCACCAGCAGCGAGAGTGAATTCAGATTAGTGCACTTAGTTCAAAAGCGATAACTCTGATATAGGCCATTCCCTGAGAGCCAGGATTGTTATTGACTGACGAATACCAGTGACAGGTAGTTAAACTCACACCCATCATCATTGCACTGGACTTGAACCACAACTTCAGCTTGTGATATGACCACAGTTGCTCCTTTCTCCTTTAAGTCCAACTCCATTATATGATGCCTGCATTCCTGTTCAGTACTGAAATGTAGACATGACATCACTGGGAAGTGGTCTGACACTGAGCAAGCGCTGTTCTCTCGTGTGCAGCAGGGGGCGTCTAGGTGTGTCCGCCGTGCCTCGGCCAGTGAAACCGCACCTGTGCCCCTCTGACGGAGATGGTGCCAGGCCAGGTGTCTACACTTGGTCTCGGATTTGCCCACTAAGGTCACTGTTCTCGCCTGTCCAGATGGTGTATTTTCACTCTGTTGTCAAAGGTGGCCTATCCCCTTGACATCTGCTTTGCGGGGAGGTGGGTCTGGGGTCCCTACATGTGTGAGCCCAACCTATTCTGCCTTAAGCAGTGGGTGGTACAGAAGGGTCTCCTATCCCCTTAGAGGAGGATTGCTGGTGGTTACACACCACATCCAGTCTCCAGGCTGCGCAGCCCAGGGGTGGTGGCCGATCGGCCCACAAGGTGGCAAAAGACCTTCCTCCCTGGCACAGTCCAGGCCCGTTCCACTGGACACCTGGCGACCTCGTGGGCCGTTCTCTTCCAGACCCCCGCAGTGCTGCGCCTTGGTCTTTCTCCACAGAGGTTTTGCGAGATTCTAGCGCCCAGGCACGTCGGAGCCATCCTCTCAGTGTTTGGTTTCCCGAGCTCTTGTGGGCAGCCTGAAGCCCCTTCGCCTGCCGATAGGTATGTGTCTTGCACTTGTCAACTGCTACCGGGTTTGAGATGGCTATGGTGTTGCCTTCCCAGTGAGGTAATGGTAGCATTTTGATTGTGAAAGGGAACTTTGGGCTATTATCGAGACCTTGGGCCTCTGACAGAGAACTGTAGTTTTGGGGTCGTAGTGCCCAGCTGGGTTAAACCCTGGCCACAAGCCCAATGCTGCACTGTGTCTTTGCTTCTTCTGCAAAAGAAGGGCAAGCTAGTGTTAGCACTGTAAGGCCCTTATTGCACCAACCCAATAGACATGTCCAGTACCTGGTCAGTGTGAGGCTGCTTTCCTGGGAGGGAACGATGACATCGCTCGTTCAAGGCATCGAGGCTGTGATAATAACccaatgtttttgtaaatagaCAAGTTCGcctgttgctgtttgtttgttatgtctttttaaattacttataaGATGTACAAATATGATTCTTTGCTAATATATATCATGAAATTAGTAAagcttggttaaaaaaaaatatgaatttgtattaaaataagctATGAAGCAGCGGGAATGGCAGGTGGGGTGATTTCTAGCCCACcttttgtatttatgaattgtttttatgtttgattGAAAAGTGAATTGTGATGATTTGTCAAGTGATCTTAATAATAACTTGTCGACAGCTTTAAGAAGGAGAAACTCAGCtttatcgcacagccctacatGCGgaggtttttgtttctttttctttttttaagaactaAAAGAGGGACTGTAGGTGTTTCATAAGGTGCTAAACATTTtatctaaaaagaaaacaaatatattgttagGAAAAATCAACTTGTCTTGACAATGACTGTTTTTAAGTTGTCGTAGTTATAAGAAgaaaaagcattattattttactcttatacaaatatattaacaaagGCATTTTAACTTTgtacttgaaaaaaaaataaaaaataaaaaaataatggagAGATTCATGTGTTTTAGCCTAGACATTGCTGTAGTTGGTGCTTATCTGTGGGAAAATCATGTATTCATATTGGAAATTAGAGAAAAAGAAACCTTTGGTAATAACTTTTACTGTTACATATGTACTTGCTTGATCCCTAGCAGCCGTGCTTCTCTACCCTACATTCCATGCAGCAGGATCGTCCGTGTTTCtttcttcctgtttgttttagatTCTGTTTCGTTGGACTGTAATTTTTACCGTCGCTTCGATATTTATTGACAacaataatgtgcatttcacaAGTCTGAGACTCTGCAGGTCAATTTCTCTATATTTCTCTCATAGTGAGATAGTGATACTGTTGTACTTCTGTGTAACTATTTCTCGTGACATAGCTGTTTATGGATTATACTATTCTAAAGGTCAGTGCGTACAACCAATGTAGCAGTCAGACTCAGTCCGCCTTCGTCCCATTATTTTCAGTGcccagaaagaagaaaaaggctCCTTTCTTATGTACTTGTGCTGGAGAACACTTgaataaatgtactgtttttgtgcaaaaaaaa

Function

NR:

description
PREDICTED: DNA (cytosine-5)-methyltransferase 3A-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004297 True 6402 mRNA 0.45 15 41896251 41916088

Neighbor

gene id symbol gene type direction distance location
AMCG00004295 NA coding upstream 43991 41829739 ~ 41852260 (+)
AMCG00004294 dtnb,LOC108412184,LOC106603664 coding upstream 165815 41705110 ~ 41730436 (+)
AMCG00004293 NA coding upstream 229844 41652615 ~ 41666407 (+)
AMCG00004292 NA coding upstream 295277 41568409 ~ 41600974 (+)
AMCG00004291 NA coding upstream 345282 41543076 ~ 41550969 (+)
AMCG00004296 NA coding downstream 33283 41949371 ~ 41964474 (+)
AMCG00004299 mapre3b,LOC107392001,LOC100704238 coding downstream 94597 42010685 ~ 42024740 (+)
AMCG00004298 LOC104961504,LOC106608390 coding downstream 113289 42029377 ~ 42045091 (+)
AMCG00004301 NA coding downstream 131555 42047643 ~ 42065411 (+)
AMCG00004300 NA coding downstream 153440 42069528 ~ 42083842 (+)
G7101 NA non-coding upstream 289492 41605110 ~ 41606759 (+)
G7102 NA non-coding upstream 366943 41523053 ~ 41529308 (+)
G7084 NA non-coding upstream 527773 41367145 ~ 41368478 (+)
G7078 LOC103376870 non-coding upstream 532185 41295298 ~ 41364066 (+)
G7048 NA non-coding upstream 917932 40977999 ~ 40978319 (+)
G7182 NA non-coding downstream 49926 41966014 ~ 41966233 (+)
G7221 NA non-coding downstream 149409 42065497 ~ 42067725 (+)
G7231 NA non-coding downstream 171703 42087791 ~ 42089653 (+)
G7272 sod2,LOC102787761 non-coding downstream 417337 42333425 ~ 42336643 (+)
G7278 NA non-coding downstream 448780 42364868 ~ 42365654 (+)
G7094 NA other upstream 389020 41459576 ~ 41507231 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 1555016 40326410 ~ 40341235 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 4048531 37832623 ~ 37847720 (+)
G6369 NA other upstream 4896093 36999357 ~ 37000158 (+)
G6328 NA other upstream 5004505 36861547 ~ 36891746 (+)
AMCG00004304 NA other downstream 294342 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 772691 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 2702097 44618185 ~ 44640732 (+)
AMCG00004380 NA other downstream 4045922 45962010 ~ 45968306 (+)
G7999 NA other downstream 6230800 48146888 ~ 48147156 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000062_01565388_01612161 DNMT3AB coding CI01000062 null 1565388 ~ 1612161 (+)