AMCG00004298 (LOC104961504,LOC106608390)


Basic Information

Item Value
gene id AMCG00004298
gene name LOC104961504,LOC106608390
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 42029377 ~ 42045091 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004298
GGCACATCCTGCAGGCGGCGCTGTTGTTAAAATTGTAACGGCGATCAGTTTTAAAAGAATACATCCCCGCTGACGTCACAGCGCCGAGGAGACGTGGCAAAGGGACGTTTAAATCCTCAGACTGGGACAGACGGGCGACCATTGTTTCCCTGCTGGAGCGCGGAGTGCGGATTCCTCGTACACACAGCGGGCTGCTTTGCTCTAACGCTTATTCACAGCGGTGTGGAAAATGGCTTCGTCGGCGAATAATGGGTCAGTCGGTAAATGGGAAGTCGTCAAGAAAAGCAAGAAGCCGAGCAGTGGCGGAAAAAACCCGAGTGAAAAGAAGCCCGGTGGGAGGAAAGCGCTCAGTGAGGCTAACCTGCCCAGGATCGACCCGGCGCCTCCCTTGAAAACTTCTGAAACGATCTACGAAGGCTTTGAGAGAATGgggaagaaacaaaataaagaacaggTGCCACCAGCACCCAGCCCTGAgcaacagcagaaaaaaaacagcgcCGGAAAGCAGGCGAAGAAATCCCCTGGAAGCGATGGACGACAGAAACTGGCCAAGTTTAAATCCCTGGAGGAAGCTGTGAAGGCTCTTGACGTTTCGGAGCTGcagcaggagctggagaagaGCCAGAGCCTCTTTCCGGAGAACCCGTCGGTTTGGGTGAAGGACTTGGCTGGCTACCTCAACTACAAACTGCAAGCCCCCGAGGTCGACCCCACACTCAGCAACCACCCGTACGATTACCCTTACAGCCTGGCAAGCAAAGATCTGAAGAACATCATTAAGGTCCTGCTGGGGAAGTGCTCTCACTCCTTACAGGAATTCTTTGATCACTGCATCTACACCATGCTGCGTGAGCTAGACAAGCCCTCAGGTGAAACGCTGCATGGCTACAGGATCTGCATTCAGGCCATCATGCTTGACAAACCCAAAATCGCCACGCTGAACCTGGCCGATCACTTGGAGCTTCTGCGCTCTCATCAGAACAGGCCGGTGAAGTGCCTCACGATCATGTGGGCTTTGGGACAGGCTGGGTTCACAGACCTCACTGAGGGACTCAAAGTGTGGCTTGGCATCATGCTACCGGTTCTCGGCATCAAAGCACTGTCGTCTTATGCCATTGGATACTTGGAAAGGCTGCTAATGTTGCACGCTAACTTAACCAAAGGCTTTGGGATAATGGGACCAAAGGAGTTCTTTCCTCTGCTGGATTTTGCCTACATGCCCAAGAACGCACTGATGCCCAGTCTACAGGAGCAGCTGAGGCGGCTGTACCCCAGGCTGAAGGCGCTGGCGTTCGGAGCCAAACCGGAGTCTACTCTGCACACCTACTTCCCATCCTTCCTCTCCAGGGCCACCCCCAACTGCCCGGCCGACATGAAAAAAGAGCTCCTGACCAGTCTGACGGAGTGCCTGTCGCTGGACCCGCAGAGCCTCAGTGTTTGGAGGCAGTTGTACACCAAGCATCTTTCGCAGTCCAGCCTTCTACTGAATAATCTCCTTCAGTCTTGGAATAGGTTATCGCCAAAGCTTCGTAAATCTCTGCAGGAAACTGTGCAGTCGTTCAAAGTGACCAATGAGGAAATGATGGCCTCTGCCAATTCACAGGATGTGAAAGACTGTAACACACTGTGCAATAGTCTGCAGTCCAAGATGAAGAGTCAAGGCTTCCCTTGGTCTCGCCTGCTGCTGGCGGTACTGGTGTTTGCTGTTGGTTTTTTCATCTATGACATAAGGTCACATGGGTCTTTCAAAGCTTCTTCCTGTGCACATGTGCTTCGCCGGTCAGGAATGATGTCGGTCTCTCAGCAGGCCTGGAGTAAAGTCTCTCATTATTCTCAGGAGGGATACAGttggCTGGAGACAAACGCACCACAATACTACTCTCAAGCGGTCACTACTGTGGGCCCCGTTTTGGAAGCAACTTGGGAAAAGACCAAGATGGCAACTGCCTACCTCGTGGAGCAGTGCTCAGTCCAGGTCATGTGGATCAGAGAGAACATGCCGAGGTTTATCGAATGGCTCAATTCCAACATCccagatgctgtgtttcagTTTATTGAATATTTGAAGCAGTTGCTGCTGGTCCTCCATCAGAATTACCTACAGCCAGCTATGGTGTATATGAAATCATCCTTTGAACAGGGATGGCAAACATTTGTAGATTCTTGCAATGGAGAAGTATCCCTGCCCTGTGTTCAGAAACATTTGATATCCATATCTAATTCCACCTGGACATACCTGCAGAACACGACCCTTGCTGTTAAAAACTGGGCGTTTGCCGTGATCTCCAGACAGTAAGGAGCGTTTGTAACCCAGAGACTTGAGTTCCTTGTGTTCTCCTGACCAGGGAAAAACCACCAGTGCTTTTTAACAAGTGCTCAAAGAAGGACTTTGCAGAAGATGGAGCTGACACTTTTGTCAAACTGCATGACATTTTGTATCCTCTCATATTTTCTACCTACGGTTTGATTACTTTGGGGGTGcacagaattttgttttttaaagggtttTCGGGTTTATAAATGTCAACCAGTGTTATTTCAAGGTGACTTACCAAAAGGGGAAAATATATGGACTGAAGGGCAACTGCTTTCGCTTGGAAAATCAGACATCTTGCATTTAATCTCTTTTAATGATTTCAGTTGAACACTGGCCACGGTTAGTtacagacattattatttttatgaatgtccTTTTCTTGCCAAATGTTGGTAAGAAAGAGAACCCTTAGAAATTAATCACATGAAAGACCTTCAATAATCTCTAAACTAATCTGTGAATGAACTATTAAATTGTCCTTGTAGAGAAACtttggaaggttttttttttttttaaatctagctTCTTCTCAGTTGGACATTTTGAAATCTTTAtacatgacatttttattttctacaatcTGTATTGAATATCCACAGTGAAAGAGCACTGGACTGTATATTGTGatgactgctgctgctactgtattatattttcacaTCAAGCTAATTGTTCTAGTAGGGTGACTAGTTAAAATTGACCTACCTCCTGACTGGAAGACCCAGATGAGTATTCTGTCCCCTGTGACCTTCGTGATAGTTTgagtgctttgaaatgtgctTCTCTCATCCCTGTGAAAGAAGATATTTTCTTTTAGCCGAAGAAGTTATCGACGGACAATTCTCTGAACTGAAAGCCAGAGCGGAGAGAGAACTGCACGGGAACCTGTTGAGAGTTGACACCACTCATCAGGAGCTAAAACTGCCCGGGCTGTGTTGATTGAAGTGTTATGAGTGAGATTACGATCCAGATGGCCTTTTTGTGGTTATTGTGCAAAGAAGCAAACGATCCAGTTGTCCTTTGCAGTGTACGAAATGTAGCCCTCCATTAGATTTTGATATTTCCTGCTGCTTTACTTCACCTGACCTAAAATGAGAATTGTAAGCCAGAGCAGAATTATTTGCATGTGGTTATTCACATTTTAGTATCATAGGTCTTCaccacagtgttttaaaataaaattattgcTCCCCACTTCTACTGTTGTCTTATGCATTGAGAAAATGGTGTATACTTGTGTGTGGAAGTCCAGACTCTGTCTGGAACTGAGCTATAAACCCAGAGAATCTGAGTGAATCTGAATAAATGTCACTGCTGAACTCTGA

Function

NR:

description
PREDICTED: transmembrane protein 214-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004298 True 3645 mRNA 0.47 17 42029377 42045091

Neighbor

gene id symbol gene type direction distance location
AMCG00004299 mapre3b,LOC107392001,LOC100704238 coding upstream 4637 42010685 ~ 42024740 (+)
AMCG00004296 NA coding upstream 64903 41949371 ~ 41964474 (+)
AMCG00004297 LOC106603656 coding upstream 113289 41896251 ~ 41916088 (+)
AMCG00004295 NA coding upstream 177117 41829739 ~ 41852260 (+)
AMCG00004294 dtnb,LOC108412184,LOC106603664 coding upstream 298941 41705110 ~ 41730436 (+)
AMCG00004301 NA coding downstream 2552 42047643 ~ 42065411 (+)
AMCG00004300 NA coding downstream 24437 42069528 ~ 42083842 (+)
AMCG00004303 NA coding downstream 44780 42089871 ~ 42098322 (+)
AMCG00004305 NA coding downstream 174929 42220020 ~ 42259741 (+)
AMCG00004309 wtap,LOC105015380,LOC100196682 coding downstream 293423 42338514 ~ 42347082 (+)
G7182 NA non-coding upstream 63144 41966014 ~ 41966233 (+)
G7101 NA non-coding upstream 422618 41605110 ~ 41606759 (+)
G7102 NA non-coding upstream 500069 41523053 ~ 41529308 (+)
G7084 NA non-coding upstream 660899 41367145 ~ 41368478 (+)
G7078 LOC103376870 non-coding upstream 665311 41295298 ~ 41364066 (+)
G7221 NA non-coding downstream 20406 42065497 ~ 42067725 (+)
G7231 NA non-coding downstream 42700 42087791 ~ 42089653 (+)
G7272 sod2,LOC102787761 non-coding downstream 288334 42333425 ~ 42336643 (+)
G7278 NA non-coding downstream 319777 42364868 ~ 42365654 (+)
G7288 NA non-coding downstream 331534 42376625 ~ 42379961 (+)
G7094 NA other upstream 522146 41459576 ~ 41507231 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 1688142 40326410 ~ 40341235 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 4181657 37832623 ~ 37847720 (+)
G6369 NA other upstream 5029219 36999357 ~ 37000158 (+)
G6328 NA other upstream 5137631 36861547 ~ 36891746 (+)
AMCG00004304 NA other downstream 165339 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 643688 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 2573094 44618185 ~ 44640732 (+)
AMCG00004380 NA other downstream 3916919 45962010 ~ 45968306 (+)
G7999 NA other downstream 6101797 48146888 ~ 48147156 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location