AMCG00004299 (mapre3b,LOC107392001,LOC100704238)


Basic Information

Item Value
gene id AMCG00004299
gene name mapre3b,LOC107392001,LOC100704238
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 42010685 ~ 42024740 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004299
ATGACTCCAGCTCCCGTGTGGTCGCCCACCCTGCCACCGAGCGGCAGCCGCAGTCCTGACGACAGCTCCAGCAGCAGGATCGTCCCCTTCCGAAAGCATGCTGTCCGGGAGGAGAGGTCCTACAGTTGGGGGATGGCAGTGAATGTGTACTCCACATCTGTGACTATTGAGAACCTGAGCCGACATGACATGCTGGCGTGGGTCAACGACTCTCTGCAGCTCAACTACACGAAGGTGGAGCAGCTGTGCTCAGGAGCTGCATACTGCCAGTTTATGGACATGCTCTTTCCCGGCtgtgtacatttaaagaaaGTCAAGTTTCAAGCAAAACTTGAACACGAGTACATACACAATTTCAAAGTACTACAGGCAgcttttaagaaaatgaatgtcgATAAAatcATTGCAGTTGAGAAATTGGTGAAAGGGAGGTTCCAGGACAACTTCGAGTTTGTGCAGTGGTTCAAGAAATTCTTTGACGCCAACTACGACGGGAAGGACTATGACCCCATGCTGGCCAGACAGGGTCAGGATGTGGCCCCTTCCCCCAATCCAGTCCCACAGAGGACATCCCCAACAGCGCCCAAGAACATGCCCGCCCCTCAGAGGCAGCCCAATACAACTCCCTCCATGGGCATCCGGAAGAACCCTCCAATGGCCAGGAACGGGGGCAGCGACACCGACGCGCAGATCATGGAGCTCAACCAACAGttAATGGAACTCAAATTGACGGTAGATGGtctggagaaggagagggattTCTACTTCAGTAAACTAAGGGACATCGAGCTCATATGCCAGGAACACGAAACTGAAAACAACCCTGTCATCTCCAAGATTATAGAAATACTCTACGCTACTGAGGAGGGGTTTGCTCCTCCAGAGGACGAAGATCTTGATGAACAGCCGCGTGAGGACCAAGATGAATACTAAACCCACCTGATGACTTCTCCCTTCTCCCTGCCCATCCGTCTGCCCCCTGCATCTCCCCCTCAATTctgccctgtctctctctgtgcatctcttcctctctctcactcactcgcccactctctctctctctctctctctctctctctctctctatttataattttgtattatttttctgtctctcttccctcctctctttctcctaaCCACAGCTGCTCCCAGGCTGTTCTCGCACTGCGTCCCGACCTCCGGGGTGGCACAGTCTCTTTCCCACACCATCACAGATTAGTGACAGGAATCAAATCATTTCAGCATggtgcaaaaaacaaattatttagtgaatgaacaaaaataaataaatgtggggTAAGGTAATGAAcaaagctgtatatattttgatgCAAAAGACCAGAAGAGACTCACACAAAGAAATGACCTGAATCCGGTTGCTGAGTGGCCTCTGCGATTCTGATGTTTAGCTCTATTCGGGATGTATTGTACTTTGTAGTAGGCCTTCAGCGGTTTCAAAAGTAACCGTCACTCCATGCTCCTTCTCTTTCCCACACCGCTGTATCCATCCCATCTGAGACTGTATTATAtccaagagaaaaaagaaaaaaacactaaatgaaaacaagatatttaatttgtatattttttcttaaatgactTTACttgcactttgcattttgtttaaccGTAATTGAAGATTATTGAGaaataatttgagaaaaaaaaggtgATAAGTTAATAGATTGCAAGATGTTTTAAtggcttgtttgtgttttaaagacaGCATgaagattttatttgtttatttaaggtCCTTTTGACTGGGGAGGGGACatactttctttttgttttttaaagagaaacaatacaaatatagcaCTGATGGAAGAGACTTGTTCAACATGCTGTGTGGCTTAGTCCTTTGCCGGACATCTCTCTAACAAGCATGTGAATGTGGTAGGTGGTCGGTGAGGGATTGAACTCTTTTTGGACTGCTTGTGTTGTAGGAGTTGGTCCTCAGTAAGGATCGGTTTATTTTGGTTGGATCTTTATGAAGAATGTGAGCTAAAATGTGGACGTAGGGGGAGTTCAGTGTTGGAGCTCGATGTTCACTGTAGATTGAGTGCAGCAGCACAGCTTTTTGGATGTATTGAACTCGACAGCAGGGCAGACGAGATGTCATACGCCGAAAGGCCTTACAtccattttactttaaatcGGGGACTGAACAGACGAACTGAACGAAACACGACTAATTGTGACAGATGTCGCATGATTTGAGAGTTTAAAGAGTTTTTAGctgctatttttaattttgagtttatatttttggacttattttttattattattattattattattattattattattattattattatatgttgtaCACCTTTAATTGCCGTGTAAGTTCTGATTCGGAAAATGGCAATGGTCAAGAAGACCAGCACGGTTAAACCCAAGAGATGTGGAAGGATTAAGGAATGCCGCTAGCACAGTTCTAGGCACCACCGCTCACCCCCTGCTGCTTCTACAATCAGACCACACAGACATCTGCCTGGACATCTCACATACATTCTCGCATCGCCTGTCTGATTGAAACTCTGTGTGGCCATAACAATGGTGTTCAAAACTTGCatctgttttaagttttattacataaataaacttgTGTGAAAAATTGAATTGTGCGTCGATGATGTTCTCTTGCTG

Function

symbol description
mapre3b Predicted to enable microtubule plus-end binding activity. Predicted to be involved in protein localization to microtubule plus-end; regulation of microtubule polymerization or depolymerization; and spindle assembly. Predicted to act upstream of or within cell division. Predicted to be located in cytoplasm and microtubule. Predicted to be active in microtubule cytoskeleton. Orthologous to human MAPRE3 (microtubule associated protein RP/EB family member 3).

NR:

description
PREDICTED: microtubule-associated protein RP/EB family member 3-like isoform X2

GO:

id name namespace
GO:0008017 microtubule binding molecular_function

KEGG:

id description
K10436 MAPRE; microtubule-associated protein, RP/EB family

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004299 True 2664 mRNA 0.44 7 42010685 42024740

Neighbor

gene id symbol gene type direction distance location
AMCG00004296 NA coding upstream 46211 41949371 ~ 41964474 (+)
AMCG00004297 LOC106603656 coding upstream 94597 41896251 ~ 41916088 (+)
AMCG00004295 NA coding upstream 158425 41829739 ~ 41852260 (+)
AMCG00004294 dtnb,LOC108412184,LOC106603664 coding upstream 280249 41705110 ~ 41730436 (+)
AMCG00004293 NA coding upstream 344278 41652615 ~ 41666407 (+)
AMCG00004298 LOC104961504,LOC106608390 coding downstream 4637 42029377 ~ 42045091 (+)
AMCG00004301 NA coding downstream 22903 42047643 ~ 42065411 (+)
AMCG00004300 NA coding downstream 44788 42069528 ~ 42083842 (+)
AMCG00004303 NA coding downstream 65131 42089871 ~ 42098322 (+)
AMCG00004305 NA coding downstream 195280 42220020 ~ 42259741 (+)
G7182 NA non-coding upstream 44452 41966014 ~ 41966233 (+)
G7101 NA non-coding upstream 403926 41605110 ~ 41606759 (+)
G7102 NA non-coding upstream 481377 41523053 ~ 41529308 (+)
G7084 NA non-coding upstream 642207 41367145 ~ 41368478 (+)
G7078 LOC103376870 non-coding upstream 646619 41295298 ~ 41364066 (+)
G7221 NA non-coding downstream 40757 42065497 ~ 42067725 (+)
G7231 NA non-coding downstream 63051 42087791 ~ 42089653 (+)
G7272 sod2,LOC102787761 non-coding downstream 308685 42333425 ~ 42336643 (+)
G7278 NA non-coding downstream 340128 42364868 ~ 42365654 (+)
G7288 NA non-coding downstream 351885 42376625 ~ 42379961 (+)
G7094 NA other upstream 503454 41459576 ~ 41507231 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 1669450 40326410 ~ 40341235 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 4162965 37832623 ~ 37847720 (+)
G6369 NA other upstream 5010527 36999357 ~ 37000158 (+)
G6328 NA other upstream 5118939 36861547 ~ 36891746 (+)
AMCG00004304 NA other downstream 185690 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 664039 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 2593445 44618185 ~ 44640732 (+)
AMCG00004380 NA other downstream 3937270 45962010 ~ 45968306 (+)
G7999 NA other downstream 6122148 48146888 ~ 48147156 (+)

Expression


Co-expression Network