AMCG00004300


Basic Information

Item Value
gene id AMCG00004300
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 42069528 ~ 42083842 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004300
ATGGCCAGTATGGCTTTTTACGAGTATGTTACTCAGGAACAACTAGCTGGTTTTGACAGGTACAAGTACAGCGCTGTCGATTCCAACCCGCTGTCTGTGTATGTTATGCATCCTTTCTGGAATTCTGTAGTAAAGATTTTACCCAGGTGGCTAGCCCCAAACCTCATCACCTTCACAGCTCCTGGCCACCTACACGTACCCAGCTGGGTGTGGATTGTGGCGGGCCTGTTCAACTTCACAGCTTACACATTAGACGGCGTGGATGGGAAGCAGGCTCGGAGGACCAACTCCAGCACACCTCTGGGGGAGCTGTTTGACCACGGCCTGGACAGCTGGGCCTGCGTGTTCTTCGTGGTGACCGTGTACTCCATTTTCGGGAGAGGGGAGACGGGCGTGGAGGTGACCACTCTGTACTACATCCTGTGGGTGGTGCTGCTGTCCTTCATCCTCTCGCACTGGGAGAAATATAACACGGGGGTGCTGTTCCTGCCCTGGGGATATGACATCAGCCAAGTGaccATCTCCATTGTGTACATTGTGACATCAGTGGTCGGGGTGGAAGCTTGGTACACACCAGTGTTCTGGAAATTCCACTACAGAGACCTCTTCACTGTCATGATACTGGGATGTGCGTTTCTGGTAACTCTCCCAATGAGCTTGTACAATGTCTTGAAGGGGTACCGCAGCGGCACTCTGAAGCACAGCTCTCTGTACGAGTCCTTCCTGCCCTTCCTGTCTCCGGTGCTGCTGTTTGTCCTGTCCACCCTGTGGGTCTGCCTCTCGCCTTCAGACATCATCCAGTTGCAGCCACGCGTCTTCTACTTCATGGTGGGAACGGCCTTCGCCAACATCACGTGTAAGCTGATAGTGTGTCAAATGAGTAACACGCGCTGCCAGCCGCTCAACTGGCTCCTGCTGCCCATGGCTCTGGTGGTGGGGCTGGTGAGCTCAGGACTGGTGCAGAACAGTGAAATGCTCATCTTGTACGTCTGGACCACCATCGTAGCCTTGGCGCATGTCCACTATGGGGTCTCTGTGGTGCATCAGCTCAGTGATCACTTCAATATCTTTGCTTTTTCACTCAAAAAACCCAACTCGGATTGA

Function

GO:

id name namespace
GO:0008654 phospholipid biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0016780 phosphotransferase activity, for other substituted phosphate groups molecular_function

KEGG:

id description
K00993 EPT1; ethanolaminephosphotransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004300 True 1104 mRNA 0.53 10 42069528 42083842

Neighbor

gene id symbol gene type direction distance location
AMCG00004301 NA coding upstream 4117 42047643 ~ 42065411 (+)
AMCG00004298 LOC104961504,LOC106608390 coding upstream 24437 42029377 ~ 42045091 (+)
AMCG00004299 mapre3b,LOC107392001,LOC100704238 coding upstream 44788 42010685 ~ 42024740 (+)
AMCG00004296 NA coding upstream 105054 41949371 ~ 41964474 (+)
AMCG00004297 LOC106603656 coding upstream 153440 41896251 ~ 41916088 (+)
AMCG00004303 NA coding downstream 6029 42089871 ~ 42098322 (+)
AMCG00004305 NA coding downstream 136178 42220020 ~ 42259741 (+)
AMCG00004309 wtap,LOC105015380,LOC100196682 coding downstream 254672 42338514 ~ 42347082 (+)
AMCG00004308 acat2,LOC107696107,LOC107726488,LOC107732634,LOC107601581,LOC107693222,LOC107549121,LOC102788057 coding downstream 266389 42350231 ~ 42355400 (+)
AMCG00004314 NA coding downstream 464498 42548340 ~ 42576558 (+)
G7221 NA non-coding upstream 1803 42065497 ~ 42067725 (+)
G7182 NA non-coding upstream 103295 41966014 ~ 41966233 (+)
G7101 NA non-coding upstream 462769 41605110 ~ 41606759 (+)
G7102 NA non-coding upstream 540220 41523053 ~ 41529308 (+)
G7084 NA non-coding upstream 701050 41367145 ~ 41368478 (+)
G7231 NA non-coding downstream 3949 42087791 ~ 42089653 (+)
G7272 sod2,LOC102787761 non-coding downstream 249583 42333425 ~ 42336643 (+)
G7278 NA non-coding downstream 281026 42364868 ~ 42365654 (+)
G7288 NA non-coding downstream 292783 42376625 ~ 42379961 (+)
G7293 NA non-coding downstream 391734 42475576 ~ 42475886 (+)
G7094 NA other upstream 562297 41459576 ~ 41507231 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 1728293 40326410 ~ 40341235 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 4221808 37832623 ~ 37847720 (+)
G6369 NA other upstream 5069370 36999357 ~ 37000158 (+)
G6328 NA other upstream 5177782 36861547 ~ 36891746 (+)
AMCG00004304 NA other downstream 126588 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 604937 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 2534343 44618185 ~ 44640732 (+)
AMCG00004380 NA other downstream 3878168 45962010 ~ 45968306 (+)
G7999 NA other downstream 6063046 48146888 ~ 48147156 (+)

Expression


Co-expression Network