AMCG00004301


Basic Information

Item Value
gene id AMCG00004301
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 42047643 ~ 42065411 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004301
CTTTTTGTCGCCCCAGAGAGACGGGCGCTTGGTGGGTTTGTTTGGGTTTAAAGAGCTGTGTAGTGATGGAAAGGGGACGGGCAGACCAAACCTGAAAACACGCAGGATTAATACTCGCAAACAGCAATGTATCTGATTAGACTGGATTATTGAatttacatctttatttttcttcggATAATTCCGATTAACGTGTTGCATGTGCATATAGTTAAATACAGCGTATATAGgctagttttatttatatatctatgcTTCTAATGGTAAACATGGATAGgttaagtacattttttaattcatcgCGATgatggtttagtttttttatgttatttttactgtatCGAATTAAGTCTATGTTACACTACATATCCGGGAATATTTTGCATAAAAGGATCAGAACGAATATAGCTCCTGCATTATAGGCTACAGATCACtgtgtgttttcatatattCCTTCTATATTGTAAACAGTGTattttactataaatatatctttttaatattccgcactttacattactttttacatatttaattttaaatacattttattttcagttcaaaACCTTTATACTAATCTGCAAATTCAGTACTGTTTTGTGAGCACAGCAACCTGCATATAAATCTCTGGACTCAACAGATTTAAAGATGTCTTTCGATCAGGGAATCCGGAGCACCGCAGAAAAGGAAAACGCCGgtgtcAGGATTACTTTGACATCCTTCATGACAGGAGGGAAATGAACCTTCTTTGGGGTTTCCTCAGCCAGGAGTAATTCAGATATGGAGTTCCGGTTCGGTAGCTTGATTTTCAGCTCCAAATTTGACTCTGGGAACTTGGCCCGGGTCGAGAAGTTGGAACATCTTGAGCCAGAGGCAGAGGCAGCCAGTAATGGAAGTGCTACATCTGGGGTCTTGGGAGGCCCCCTTTCAGTGCCAGAGTATGAGTTTAATGTTTGGACTAAACCTGACTGTGCAGACACAGAGTTTGAAAATGGGAACAGGTCCTGGTTCTACTTTTGTGTGCGGGGAGCAGTCCCTGGGAAGCTCATGAAAATTAACGTTATGAATATGAACAAGCAGAGCAAGCTCTATGCACAAGGGATGGCTCCTTTTGTGAAAACCTTACCAGTGAAAACGCGATGGGAAAGGGTGCGGGACAGGCCCACGTTTGAGATGGTGGAGAACCAGTTTGTTCTGTCCTTCATGCACCGCTTCCTGGAAGTCCGTGGGACCACAACCTACTTTGCTTTTTGCTACCCATTCTCGTATGCCGAATGCCAGGACCTCTTGCTTCAGATGGATCATAAATTTGCCAACTCGATGCACTTGACAGCCAGCAGCCCTGTAGATTCCATCTATTACCACCGGGAGCTTCTCTGCCACTCCTTAGACGGACATCGAGTTGACCTCCTGACCATTTCATCATGTCACGGTATGATGGAAGAGAGGGAACCAAGGCTCGAAAAGCTGTTTCCTGACAACTGCACCCCACGTCCTTACAGATTTAAGggaaaaaagGTATTCTTCCTCAGTAGTCGGGTTCACCCAGGGGAGACGCCCTCCAGTTTTGTATTCAATGGATTCCTAAACTTCATCCTAAAGCAGGACGACCCCCGAGCTCTCATGCTCCGAAAAATGTTCGTCTTCAAGCTGATCCCGATGCTGAACCCTGATGGAGTCGTGAGAGGACACTACAGAACGGATTCTAGAGGTGTCAACCTGAACCGCCAATACCTCAATCCAAGTTTTGAACTCCATCCTTCTATATATGGCGCCAAAGTCATCCTACTGTACCACCACCTGCACAACCGCATTGGGCCAGACTCTCCGGACTGGAGGACGTTTGTatcccctctctcctccaacTTGCTGAGCACAAAGCCTTCCAATCATTCCAATATCAACTGCCTGTCCCCACGAGAGCGAGAGGTCCCTCTGTCTGAGATGGAGAAGAGCAACAACCTCAGGAACGAGACAGAGCACAGCGAGGGGGACTGCTTTGCGGCTGTCATGGCTTCGGCCCAGTCAGAAATCCCAATGCTCACAGAGGAGAATGGCAGACCGCTTTTCCCTGAGGTCACGACCAAAGGAGAGACCGACTGGAGGATCGACGGTGAAGGATCGTGTGGCAACGAAGGAGGCTGTGACGAGAACGAGGCTCTGAGGAGCGCCATGTCCTCCGACCTGTCCGAGCACATTCCGCCGCAGGAGAGCGGCATTGCTTTCTACATTGACCTCCATGGGCACGCGTCCAAACGGGGCTGCTTCATGTATGGAAACAGTCTGTCTGAGGAGAACGAGCAGGCAAGTGCAGTGGAAAACCTGCTATACCCAAAGCTGATCTCCATGAATTCGGCTCACTTTGACTTCATGGGCTGCAACTTCTCCGAGAAGAACATGTACGCCAAAGACCGGAGGGACGGCCAGTCTAAAGAAGGCAGTGGGCGTGTGGCAGTGCATAAAGCCATAGGCCTGATCCACAGCTATACTCTGGAGTGTAATTACAACACCGGCCGCTCTGTGAATACGATTCCTCCTGCTTGTCACGACAACGGCCGGGctactccccccccaccccccgccttCCCTCCCAAATACACCATCGACGTGTTTGAGCAGGTTGGCAGGGCCGTCGCTGTAGCTGCCCTGGACATGGCTGACTGCAATCCCTGGTCGCGCATCATCCTGTCGGAGCACAGCTGCCTCACCAACCTGCGGGCCTGGATGCTGAAGCATGTGAGGAACAGCAAGGGGCTGGCCAGcaactgcaagaagaacagcaCCAAGGCCTCGCCCAAGGGTCCCACCATGGGACTGACGGCCTCCGCCTCGGAGAACTCGCTCAGCCGAGCCCGGAGTAACAGCAACGGCACAACCAGcgggagcagcagcagccagcAGAACTCCCCGCAGCTCAAGAGCTCGCCCAGCTTCACCTTCGGCTGCAGCCAGGGGACCGGTAGGCCAGCCTGCCCCCAAGCGTCCAACTCAAGTCTCCATAAACCAAGCAGCCGAGTTCTGGGACCAGTGAGAGACTGTAAAGCTCAGGAGAAGAGACGCCCCCACCACCGGTCAATGCTAAGGACAGCAGCAGACAACCCCAGCAGCCACCACTCCTCCCCAACCCACCCtgccctctctccctgctcctctacctcctcctcttcctccctggGATTTTCCAAGGCAGGCTCCACCCCTCCGCAGCATTCCGGCCTTGGCCCCTGCACCATCCCAGCTTCTTTCAGCATGGCAGGTCTGTATGCTCTCCAGCCCCCCAGCCTCTCCAAGCTCCTCCCTTCTCTGCAAGCCATACCCAAGTCCCACCTCCTAAACAAGGCCATAAGCAAACGGCTAACCCCGCTGCTTCACCCCACCCTGCCGCCCCGGGGCTTCCTCAGTGACAAGACCAGCCCACTGGGTTCAGGGAATAGTGTGGGGAACCAGCCAGGAAGCTATACCTGTCCTAATTTTCATGCTGGCCCTCAAAGTATTGGCCTTCTGTTAAGGAACCGAAGGCAGGACAGCCAGCACAGTCCTGGGATCACCAGTGGTGGCAGTGTGACTGCGCAGAATTCCCTGAAGAAAAGCAAACTCAGATTCCTGTCATCCATGGACTATTCCAGGTGTGAGCTCCAGCCCAGAGCCAGCCGAATCCCAGTGCGGAAAGCCGGAGCCGGCACTTCCTCGCGCTCCCTGCACTCGGGCAGCCTGGAGGAGCCGGCTCTGAGAGTGTGGAAATTTGTCAAGCCAGGATTCGCGAAACAGCTGTCCCTCTCGGATGGCTCTGTGTTGGAGAGCTCCTCATTGGCCCTGAGCTCCAGGATGCTGCTGAAGTCCAGGGCCCCGAGCTCACTGCTCACTGGAGGCCCAGCCCCAGAGATGACATCCAGCACCTTACAGACGGAATTTCCAGAGAGCCGATCGACATCTGATCCAATACCCATCTGCAGCAAAGTGCCGCTGTGCAGTGAGGCTTAGCTGGATTACACttgaatttcaaattgaaattcaattagaaaaattaaaattgaatttagcttttatgatttttaaacaaagcaattagagagaacttttttttttttttgggggggggggg

Function

GO:

id name namespace
GO:0035611 protein branching point deglutamylation biological_process
GO:0009790 embryo development biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0015631 tubulin binding molecular_function

KEGG:

id description
K23438 AGBL5, CCP5; cytosolic carboxypeptidase protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004301 True 4102 mRNA 0.51 18 42047643 42065411

Neighbor

gene id symbol gene type direction distance location
AMCG00004298 LOC104961504,LOC106608390 coding upstream 2552 42029377 ~ 42045091 (+)
AMCG00004299 mapre3b,LOC107392001,LOC100704238 coding upstream 22903 42010685 ~ 42024740 (+)
AMCG00004296 NA coding upstream 83169 41949371 ~ 41964474 (+)
AMCG00004297 LOC106603656 coding upstream 131555 41896251 ~ 41916088 (+)
AMCG00004295 NA coding upstream 195383 41829739 ~ 41852260 (+)
AMCG00004300 NA coding downstream 4117 42069528 ~ 42083842 (+)
AMCG00004303 NA coding downstream 24460 42089871 ~ 42098322 (+)
AMCG00004305 NA coding downstream 154609 42220020 ~ 42259741 (+)
AMCG00004309 wtap,LOC105015380,LOC100196682 coding downstream 273103 42338514 ~ 42347082 (+)
AMCG00004308 acat2,LOC107696107,LOC107726488,LOC107732634,LOC107601581,LOC107693222,LOC107549121,LOC102788057 coding downstream 284820 42350231 ~ 42355400 (+)
G7182 NA non-coding upstream 81410 41966014 ~ 41966233 (+)
G7101 NA non-coding upstream 440884 41605110 ~ 41606759 (+)
G7102 NA non-coding upstream 518335 41523053 ~ 41529308 (+)
G7084 NA non-coding upstream 679165 41367145 ~ 41368478 (+)
G7078 LOC103376870 non-coding upstream 683577 41295298 ~ 41364066 (+)
G7221 NA non-coding downstream 86 42065497 ~ 42067725 (+)
G7231 NA non-coding downstream 22380 42087791 ~ 42089653 (+)
G7272 sod2,LOC102787761 non-coding downstream 268014 42333425 ~ 42336643 (+)
G7278 NA non-coding downstream 299457 42364868 ~ 42365654 (+)
G7288 NA non-coding downstream 311214 42376625 ~ 42379961 (+)
G7094 NA other upstream 540412 41459576 ~ 41507231 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 1706408 40326410 ~ 40341235 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 4199923 37832623 ~ 37847720 (+)
G6369 NA other upstream 5047485 36999357 ~ 37000158 (+)
G6328 NA other upstream 5155897 36861547 ~ 36891746 (+)
AMCG00004304 NA other downstream 145019 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 623368 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 2552774 44618185 ~ 44640732 (+)
AMCG00004380 NA other downstream 3896599 45962010 ~ 45968306 (+)
G7999 NA other downstream 6081477 48146888 ~ 48147156 (+)

Expression


Co-expression Network