AMCG00004302


Basic Information

Item Value
gene id AMCG00004302
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 42064989 ~ 42067664 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004302
AATGGTGACGGACGTGCAACTGGCCATCTTCGCCAACATGCTGGGGGTCTCGCTGTTCCTCCTGGTGGTCCTTTATCACTATGTGGCCGTCAACAACCCAAAGAAACTGGAGTTGAAGTTGGGGACCATCTCTTGCGGACTGAATTATGACACCGGACCGTTGATTGCTCCTGTGCTGGATGTCATCTCTGGGGCTGGGCCTCCAGTGAGCAGTGAGCTCGGGGCCCTGGACTTCAGCAGCATCCTGGAGCTCAGGGCCAATGAGGAGCTCTCCAACACAGAGCCATCTGCACCA
>TU8863
CCGTCACAGCGTTCTACACGTCGCTCCTGTGAAGTTGCGTGACGTGGCTGAAACAGCAGGAAGCGACTGTGCGTCGTGAAAGAAACTAGTTTTTCGTACAGATTACTTGTGTGTAAAACCCAATTGCAAGAATGGTGACGGACGTGCAACTGGCCATCTTCGCCAACATGCTGGGGGTCTCGCTGTTCCTCCTGGTGGTCCTTTATCACTATGTGGCCGTCAACAACCCAAAGAAACTGGAGTGAAGAGGAGCCCGGTGTGAAAGGTTGAAGTTGGGGACCATCTCTTGCGGACTGAATTATGACACCGGACCGTTGATTGCTCCTGTAAATGAGTGTGTGGAAAATGTGTTGTgaataaatagtttttcttaTGGAAATCATAGTTTACTTTCTGATGTGCACATGAGGCAGTGGTTTACAGTCCTGGAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016740 transferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004302 False 295 mRNA 0.57 3 42064989 42067170
TU8863 True 431 lncRNA 0.48 3 42066598 42067664

Neighbor

gene id symbol gene type direction distance location
AMCG00004290 NA coding downstream 591949 41469364 ~ 41473040 (-)
AMCG00004288 rab10,LOC102798439 coding downstream 622805 41438900 ~ 41442184 (-)
AMCG00004287 NA coding downstream 638597 41387789 ~ 41426392 (-)
AMCG00004285 NA coding downstream 690040 41366801 ~ 41374949 (-)
AMCG00004283 tfap2d,LOC107690996,LOC107593304,LOC107721448 coding downstream 816515 41238427 ~ 41248474 (-)
AMCG00004306 otof coding upstream 34025 42101689 ~ 42108599 (-)
AMCG00004307 otof coding upstream 50989 42118653 ~ 42150175 (-)
AMCG00004310 LOC107549081 coding upstream 265560 42333224 ~ 42336612 (-)
AMCG00004311 tcp1,LOC107669694,LOC107694622 coding upstream 287887 42355551 ~ 42361988 (-)
AMCG00004312 NA coding upstream 297103 42364767 ~ 42366935 (-)
G7192 NA non-coding downstream 40249 41985243 ~ 42024740 (-)
G7148 NA non-coding downstream 422263 41623932 ~ 41642726 (-)
G7138 NA non-coding downstream 462388 41601425 ~ 41602601 (-)
G7137 NA non-coding downstream 467540 41596659 ~ 41597449 (-)
G7135 NA non-coding downstream 477533 41587199 ~ 41587456 (-)
G7243 NA non-coding upstream 20140 42087804 ~ 42089627 (-)
G7259 NA non-coding upstream 152294 42219958 ~ 42220184 (-)
G7268 NA non-coding upstream 197026 42264690 ~ 42264977 (-)
G7270 NA non-coding upstream 245255 42312919 ~ 42313118 (-)
G7335 NA non-coding upstream 625090 42692754 ~ 42719691 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other downstream 2215866 39841935 ~ 39849123 (-)
AMCG00004203 NA other downstream 4683036 37324010 ~ 37381953 (-)
G6441 NA other downstream 4696167 37367985 ~ 37368822 (-)
AMCG00004188 srp9,LOC107553440,LOC107601484 other downstream 5277867 36783743 ~ 36787122 (-)
AMCG00004189 NA other downstream 5285927 36769048 ~ 36779062 (-)
AMCG00004313 NA other upstream 309062 42376726 ~ 42531006 (-)
AMCG00004336 NA other upstream 1335289 43402953 ~ 43450255 (-)
G7608 NA other upstream 2453250 44520914 ~ 44522213 (-)
AMCG00004364 NA other upstream 2472499 44540163 ~ 44561575 (-)
AMCG00004372 LOC108423781,LOC105921217 other upstream 2555526 44623190 ~ 44712051 (-)

Expression


Co-expression Network