AMCG00004308 (acat2,LOC107696107,LOC107726488,LOC107732634,LOC107601581,LOC107693222,LOC107549121,LOC102788057)


Basic Information

Item Value
gene id AMCG00004308
gene name acat2,LOC107696107,LOC107726488,LOC107732634,LOC107601581,LOC107693222,LOC107549121,LOC102788057
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 42350231 ~ 42355400 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004308
AGTAGGGCGGAGTTGGGCTGTAGGACCTGCCCCTCGACTCGGACACAAATCCCAGCAGGCGGGAGTGAACACGGCCCGGGACTGTGCTGTTCATCCACAGGCATAGAGGTCGTGTTGAACACGGAAGCGACCAGTATGACCAGCACCGACTGTGTTGTTATCGTGTCTGCGGCAAGGAGTCCAATCGGGTCCTTCAATGGAGCTCTGTCCTCCATGCCCCTCCCTGAGCTCGGCTCCACTGTGATCAAAGAGGTCCTGAGGAGGGCCGGTGTTAAACCAGAGGAGGTGTCTGAGGTCATTCTGGGCCATGTGCTGACAGCAGgtCATGGGCAGAACCCCGCGCGGCAGGCCAGTGTGGGAGCTGGGATACCCTACCCTGTGCCTGCCTGGAGCTGCCAGATGGTCTGTGGCTCTGGCCTGAAAGCTGTGTGCCTGGGGGCCCAGTCCATCCAGACCGGGGAGTCCACTATTGTGGTAGCCGGAGGAATGGAGAGCATGAGTAGGACTCCTCACTCAGTGCACCTTAGAGTTGGCACTAAGATGGGGGATGCTACCCTGCAGGACTGTATACTTTCTGATGGCCTGACTGATGCTTTCCATAACTACCACATGGGGATAACGGctgaaaatgttGCCAAGCAGTGGAGTGTGAGCCGTGAAGCTCAGGACCAGTTTGCCGTCTCCTCTCAGAACAGAACGGAAGCTGCACAGAAGGCGGGCTTCTTTGAGAAGGAGATTGTGCCGGTCAGCGTACCATCGAGAAAGGTAGAAGTGAAAGTGGATGAGTTTCCCCGTCATGGAAGCAATTTGGAGGCCATGTCCAAACTGAAGCCCTGTTTTCTGAAAGATGGCTCGGGAACAGTGACTGCTGCTAACGCCTCAGGTATAAACGATGGGGCTGCCGCTACAGTGCTAATGACTAAATCTGAGGCGGACAGAAGATGCCTGACTCCCCTGGCGCACATAGTTTCTTGGGCTCAGGCTGGTTTGGATCCTTCAGTAATGGGCACGGGGCCTATTCCAGCCATCCGGAGAGCGGTGGAGAAAGCTGGCTGGCAGCTGGACCAGGTGGATCTGTTTGAAATCAATGAAGCTTTTGCTGCCCAGTCGATTGCTGTTATGAAGGAACTCGGGTTAAACCAAGAGAAGGTCAATATCCATGGTGGTGCCATTTCCCTCGGCCATCCCCTTGGCATGTCAGGCTGCCGGGTGTTGGTCACTCTGCTGTATGCGCTCGAACGCACTGGGGGCAGACGAGGGGTGGCAGCGCTGTGTATAGGAGGAGGCATGGGAATAGCAATGTGTGTGCAGAGGCTTTGAAACTGGGCTGCACAACTCGGGATGTCAAGGGGAGAATAGACACTTTAAATTATTCTGCCATCTATAGGCACAACATAACTACTGTATAGTAAAAAAAGTGGTTTGTGAAATACCAATTGTTGCATTTAAGTGGATAATTGTAGAGTGAACATCAGTTATTCTTGAAAAGATGTCTGTGCCAAACATCTATGCCAAGTCATTTGTTTACAGGTAATGGCCAACTGATCTGATTTTATGATTTTCAGAATGTGCTTCATATTAAGAGGCAAAAAGCAGCTCAATTAAGAACTACAACCATCTTGCAAATAGTAGATGCACTTTGCTATTAAATATAAAGTTAGTGGGAACCTTCCttgtaaaactgaataaaaacatgaaaacaaa

Function

symbol description
acat2 Predicted to enable acetyl-CoA C-acetyltransferase activity. Predicted to be involved in fatty acid beta-oxidation. Predicted to be active in mitochondrion. Is expressed in central nervous system; hindbrain; liver; neurons; and yolk syncytial layer. Human ortholog(s) of this gene implicated in coronary artery disease. Orthologous to human ACAT2 (acetyl-CoA acetyltransferase 2).

NR:

description
PREDICTED: acetyl-CoA acetyltransferase, cytosolic-like isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups molecular_function

KEGG:

id description
K00626 ACAT, atoB; acetyl-CoA C-acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004308 True 1704 mRNA 0.51 9 42350231 42355400

Neighbor

gene id symbol gene type direction distance location
AMCG00004309 wtap,LOC105015380,LOC100196682 coding upstream 3149 42338514 ~ 42347082 (+)
AMCG00004305 NA coding upstream 90490 42220020 ~ 42259741 (+)
AMCG00004303 NA coding upstream 251909 42089871 ~ 42098322 (+)
AMCG00004300 NA coding upstream 266389 42069528 ~ 42083842 (+)
AMCG00004301 NA coding upstream 284820 42047643 ~ 42065411 (+)
AMCG00004314 NA coding downstream 192940 42548340 ~ 42576558 (+)
AMCG00004315 NA coding downstream 236466 42591866 ~ 42634968 (+)
AMCG00004318 serinc1,LOC107598085,LOC107716862,LOC107675084 coding downstream 377416 42732816 ~ 42736569 (+)
AMCG00004321 NA coding downstream 571668 42927068 ~ 42975785 (+)
AMCG00004326 NA coding downstream 758284 43113684 ~ 43114271 (+)
G7272 sod2,LOC102787761 non-coding upstream 13588 42333425 ~ 42336643 (+)
G7231 NA non-coding upstream 260578 42087791 ~ 42089653 (+)
G7221 NA non-coding upstream 282506 42065497 ~ 42067725 (+)
G7182 NA non-coding upstream 383998 41966014 ~ 41966233 (+)
G7101 NA non-coding upstream 743472 41605110 ~ 41606759 (+)
G7278 NA non-coding downstream 9468 42364868 ~ 42365654 (+)
G7288 NA non-coding downstream 21225 42376625 ~ 42379961 (+)
G7293 NA non-coding downstream 120176 42475576 ~ 42475886 (+)
G7418 NA non-coding downstream 880418 43235818 ~ 43237653 (+)
G7441 NA non-coding downstream 990950 43346350 ~ 43346959 (+)
AMCG00004304 NA other upstream 133869 42210430 ~ 42216362 (+)
G7094 NA other upstream 843000 41459576 ~ 41507231 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 2008996 40326410 ~ 40341235 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 4502511 37832623 ~ 37847720 (+)
G6369 NA other upstream 5350073 36999357 ~ 37000158 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 333379 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 2262785 44618185 ~ 44640732 (+)
AMCG00004380 NA other downstream 3606610 45962010 ~ 45968306 (+)
G7999 NA other downstream 5791488 48146888 ~ 48147156 (+)
AMCG00004421 NA other downstream 6541717 48897117 ~ 49026355 (+)

Expression


Co-expression Network