AMCG00004313


Basic Information

Item Value
gene id AMCG00004313
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 42376726 ~ 42531006 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004313
ATGAATGATGTGAGAGGCTGTGTGGACTACGTGTTTATCCCGAGCTATTATGCCCTGTATGATCAATGTCCCACTCTgTATGCAGTCTGGCTGGTCCTCTGGCTCGCATGGAATGTGTTTGTAATCTGCTTCTACTTGGAGGTTGGGGACCTTTCTAAGGACACAGACCTCATAATGACATTTAACATATCCATGCACCGCTCCTGGTGGATGGAGAATGGGCCTGGGTGCAAGGTGACCCCggtgacccccccacccccctgggCTCCAGAGGATCACCGATACATCAGCATCTCCGGCTGCTTGTTGGAGTATCAGTACATAGAGGTGGCTCACAGTTCTCTGCAGATTGTCCTAGCATTCACCCACTGTGCTTCTCCCAATGCCACTCTGGACTGCTGTCCCGCTGCCACTGAGCAGAAGGGGCCGGTGCGCCAGCTGGCTGGCTTTATCTACGCCTGCTACGTTGTGAAAGTCATTACGGAGGAAGAAGACAGCTGTCAAAaaCGGGTGCTCAGTGTCATCATCAGTGACTGA
>TU8946
TTCAGTAGACATTGACTTGATGGCCATTCTGCTGTTATGAATGACTGTCCACATGGTCAAGCAGAGTATTAACCCCACCAACCATTCCATAGTTGGCACAGTGTGAAATCCTTTCCATCaaactcaaatatatattatgtatattcattgttttcctcttttctgAAGCTGAATTTATACTAAGTGCCAGGACTACTTTTAAAAAGAGATAATTAAAGCAAGTATCTTTCATTCCCTATTTTTTCTCAACAGCAAACAAGTACACATGGTGAGTTTCcctacacacaacacaatgcactaGTGCACACTGTTCATTTCAGTTCTTAAAAACCCTTTACAAGAAAATTagtgtgaaagaaaatgcatttccacCTATTTGTATCTccttaaatcaaatgttttgaatatatcTGCAGCAAGTCTGAATAAAAGAGAGAGGACCAGAACAGGTGTACTAAAGTATTGTGCATTGTGTTCTGTGACAAGTGAGCTTCACTAGGACATCTTGTGTAatgacaaatggaaaacaaatgtagattTCTATGACCATTAGGCCATTTTTACCATGTGTAAAAGTGTTTACTCTTTTATAGTTAATTCATGATTTAATATGTTGTGTAAGTGGGCCTTTTTCTTACAGCTATACAAAGGATCATCTTTGTAATGCTCATTATTAATAGTACATGTTCAGAGGGAATGTGATGTGTGATAGAGTTTGggttgtattttatatgtgatGTGGCTGAAGTATTGTGCTTTGTGTAGTGGGTGGCACGATCCCATAAAGAACTATAGAGCAGCGTTTGTAGAGATTTCTTGCTTCTCTTCTCCTCAAGGGACTTTCCACAAAAGGTTTGTAAATCAAAGACTTGCATTCTCTCTGATTCAGAGCTGGGTTAGTCCatatttgtgctttgttttgtttgtttgtttttttatctgaacACTTGCAGGTATTATCCAGTGATTTGGAATCCATTAGCTTTTCCTTAAATTGCTGAGGAAGTAAAAAGTGTCCTCCAATTTGTGGAGGgaaacattttactgtaattgtcaatattctgtttttttttttgttttttttttacatattgttacatttcccttttctgttcttatgtaatgtatttgttaagtATCAGATTGTAATTATGTCTTCAAGACCCAAAGACAGATGTGTGGTGTGATCAAAGCGATATGTTCCACTTGGAGTGGGTCTTAGGCATATATAGATAGTCACACGGTTATCTGAATTTTTCAATCTATTATTCCAAAATTCATTAAAGATATAGGTGGTCAGTGAGTAGATATATAACACACTTTTGATGTTAATATGCTAGGCCtggtgacttaaaaaaaaaatagaacaaaaaacatactaatACAAGTGTCGCTGTacatatgtgtgtctgtgaatgtgtaAACGTGTGGACACACCCTTGAGAAcattcacagaaacacagcGCAGGATTGATACTGTGAGTCTGACGAGCCAGAAGACAATGCTGTTCTCAACATTCCAGATTTCAGttcttgtgttttcttgtttgtatttctgttgttgttttgtgttgcagaaCGGGTGCTCAGTGTCATCATCAGTGACTGACCCACCCAGTGAGCTCCAGCTACAGGACAGAtactgtgtgttgggggggttggCGTGGGGGGAGTTCCCAGCACAGCCCAAAACCTGCATGCTGGCTCTGAGCCTCTACAATGAGGTGTGCACTCTAGGGAGAGCAAAAACAGGCTCCCCAGCAAACTGGACCATTCAAACCACTGCTGAAGCCAAGACCCACTGTTCTAGCTCCGTCCTTGTTAAGTGAATTTATGATATATCATGTTCTTAGTTACCAGTTAAGGCAAATTAATATGTTCctatgctttttaaatgaagtattattatttctttgtatgttttctgCCTTTATGTGTCTGTCTTCATAATCCATATAGCGCGGCATTGTGGCAGCCAGTGGGTAGAGTCCCAGAATGCACTCTTATGGGCTGCAGACATGCACTATTGATTTGAGAATGTCCTCTGGTGCCAGCTGGAAGTGAAACTGCCGAATTACCACTTTCCAAATGGACCCCAAAGTCAGTCATAGAGAGAGCTTATTTTCTAGTGCAGTACACTGGAAAGAGAACAGAAAAGAGtcctatacaaaaaaaaaaaatcaatgaaataCTTCAAAATCACCACTTAATTCTACTGTGTTTAGGCTGTTTTTTGCCCGGTTTCATTTCTTGtcaatttatataatacaatgtgtGTACTGTtccagatgaaaacaaaaataattgaaaagaacATTGTTGCATGAACTGATTCCCCTCTGTATTAACGAACACGGCTCACCTGGAACACAGACGTCAGGGTGGCGGTTCTCTGCCCCCTGTATATTTGGTGGTGCTATCAGCCTGTAAATAAGATACTATGAATTCTGAATCagttcttatatatatacaggataTAGTATAGGTCTGAATCCCGaacaggcctttttttttttttttttttttttttttttttttttttttttttttttaagcgtATGGCAAACCATATTTATTGACATGTATTTGGACCGTTAAAGAAAGCCTTTGTCTTACACCGCTGCAGGCAATACTCTTTGTACAAGCTTCCTTGAAAAGAGCGCCAGTGGTTTTGCTTGGGT

Function

GO:

id name namespace
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004313 False 537 mRNA 0.53 8 42377798 42531006
TU8946 True 2681 TUCP 0.49 1 42376726 42379406

Neighbor

gene id symbol gene type direction distance location
AMCG00004312 NA coding downstream 9791 42364767 ~ 42366935 (-)
AMCG00004311 tcp1,LOC107669694,LOC107694622 coding downstream 14738 42355551 ~ 42361988 (-)
AMCG00004310 LOC107549081 coding downstream 40114 42333224 ~ 42336612 (-)
AMCG00004307 otof coding downstream 226551 42118653 ~ 42150175 (-)
AMCG00004306 otof coding downstream 268127 42101689 ~ 42108599 (-)
AMCG00004316 clvs2,LOC107675233,LOC107675107 coding upstream 109403 42640409 ~ 42660607 (-)
AMCG00004317 NA coding upstream 148318 42679324 ~ 42687565 (-)
AMCG00004320 fabp7,LOC108247051,LOC104945778 coding upstream 158042 42689048 ~ 42691079 (-)
AMCG00004319 hsf2 coding upstream 207497 42738503 ~ 42752817 (-)
AMCG00004323 LOC107675226,LOC107602186,LOC105017938,LOC107716890,LOC107697125,LOC107598086 coding upstream 370029 42901035 ~ 42901883 (-)
G7270 NA non-coding downstream 63608 42312919 ~ 42313118 (-)
G7268 NA non-coding downstream 111749 42264690 ~ 42264977 (-)
G7259 NA non-coding downstream 156542 42219958 ~ 42220184 (-)
G7243 NA non-coding downstream 287099 42087804 ~ 42089627 (-)
G7192 NA non-coding downstream 351986 41985243 ~ 42024740 (-)
G7335 NA non-coding upstream 161748 42692754 ~ 42719691 (-)
G7336 NA non-coding upstream 194906 42725912 ~ 42737850 (-)
G7419 NA non-coding upstream 704812 43235818 ~ 43237610 (-)
G7554 NA non-coding upstream 1337457 43868463 ~ 43868706 (-)
G7580 NA non-coding upstream 1552091 44083097 ~ 44089780 (-)
AMCG00004302 NA other downstream 309062 42064989 ~ 42067664 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other downstream 2527603 39841935 ~ 39849123 (-)
AMCG00004203 NA other downstream 4994773 37324010 ~ 37381953 (-)
G6441 NA other downstream 5007904 37367985 ~ 37368822 (-)
AMCG00004188 srp9,LOC107553440,LOC107601484 other downstream 5589604 36783743 ~ 36787122 (-)
AMCG00004336 NA other upstream 871947 43402953 ~ 43450255 (-)
G7608 NA other upstream 1989908 44520914 ~ 44522213 (-)
AMCG00004364 NA other upstream 2009157 44540163 ~ 44561575 (-)
AMCG00004372 LOC108423781,LOC105921217 other upstream 2092184 44623190 ~ 44712051 (-)
G7868 NA other upstream 3775920 46306926 ~ 46307319 (-)

Expression


Co-expression Network