AMCG00004317


Basic Information

Item Value
gene id AMCG00004317
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 42679324 ~ 42687565 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004317
CGCACAGGGGATATTGACAGCTGagcattttaaatcaacacaaGCCCAGGAGCTGCCTGAGCCATGGCGGGACGCGGGCTGCCGCTGTGCCTGTGGTTGCTGCAGCTGTGTGCCGGCGGGCGGGTCTCAGCAGCGCCGCTGGACGGCCGCCAGGCCGCCGGGGCCCCAGGTCGATTTTGGCATGTGTCAGATTTGCATTTGGATCCGACTTACCACATAACCGATGACCACACCAAGGTTTGTTTCTCATCTAAGGGTTTCCCGGCCCAGAACCCCGGCATATTTGGGGACTACATGTGTGATTCCCCTTATCAGCTCATTCAGTCAGCCTTTCAGTACATGCAACAAGTGGAGCAGCAGCCAGACTTTATGATTTGGACTGGGGACAGTCCCCCACATGTCCCAGCCAAGGAGCTCTCCACTGAGACCGTGATAAACATCATCAGCAACATGACCCACACCATCCAGGGGCACTTCCCCCATCTCCCAGTCTATCCTGCCCTTGGGAACCATGACTATTGGCCACAGGATCAACTGCCAGTATCGACTAATAAAATTTATGAAGCTGTTTCTGAACTGTGGAAGCCTTGGCTGAAACCAGAAGCCCTTAAAACTCTAAGAACAGGTGGTTTCTATTCACAGATAGTTGAGCCGAATTTGAGGTTGATTAGCCTCAACACTATTCTGTACTACAGCCCCAATAATGAGACGCTCAACATGACTGACCCAGCTGGACAGTTTGAGTGGCTGGAGGAAACTTTAGTAACATCTCGGCAAAGTAATGAAAAGGTTTATGTCATTGCACACGTCCCAGTGGGTTACCTGCCCTTTGCCAGGGGTATCACAGCGGTCAGAGAGCACTTCAATGAAAGGCTCGTGGGAATTTTCCGCGAGTTCAGCGACGTTATTGCTGGCCAGTTCTAcggtcacacacacagagacagcatCATGGTGCTCCTGGATCAGCAAGGCCAGGCTGTTAGTTCACTGTTTGTGACACCAGCTGTGACCCCAATCAAAGGAAGCTCCGAGAGCGACTCCAACAACCCGGGCTTTCGTTTCTACCAGTACAGTTCCCAGGATTTCAGATTGCTGGACATTTGGCAGTACTACTTGAATCTTACAGAAgccaatgagggaaaaaaatctgattgGAAACTTGAATACAAAATGACTGAGGCTTTTAACATACCAGATATTCAGCCAAAAAGCTTGCACGAACTTGCTCTGCGGTTTGAAAAGCCACAGAGTAAGGCCTTTCAgaagtattataataattttttgGTGAGTTATGATAACACACTTGTGTGTGAAGGAATGTGTAAAGTGAGTCAGGTTTGTGCCATACAGTTCTTAGACCATGATAGTTACTCCATGTGTACCAAGAAGAAATCTCAAGAAGTACACAACAGTTTTCATacttgatttacatttttttttatgcaatgtattttttaaaagcagttcaATACAAGATGACATGTATGAGAGAGCTTCATTCAGtctgtattttaaagcagtttttacAGTTTGCCATGATTGTGggtccaaaataaaatatgtgtaaCAGACAAATGTCAGGCCTAGCTTAGCttccaaaaaaacataaaacaaataaaccaaaaactatatatatacattgatataTTGCACAATTATATGTATGTGATTCTATGCAAGTGTATTGTTGCAATTTTGCATACAAAACATAATTGATAACCTtgtcatattttcaaaaatg

Function

GO:

id name namespace
GO:0006685 sphingomyelin catabolic process biological_process
GO:0005615 extracellular space cellular_component
GO:0004767 sphingomyelin phosphodiesterase activity molecular_function

KEGG:

id description
K01128 SMPDL3; sphingomyelin phosphodiesterase acid-like 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004317 True 1741 mRNA 0.45 8 42679324 42687565

Neighbor

gene id symbol gene type direction distance location
AMCG00004316 clvs2,LOC107675233,LOC107675107 coding downstream 18717 42640409 ~ 42660607 (-)
AMCG00004312 NA coding downstream 312389 42364767 ~ 42366935 (-)
AMCG00004311 tcp1,LOC107669694,LOC107694622 coding downstream 317336 42355551 ~ 42361988 (-)
AMCG00004310 LOC107549081 coding downstream 342712 42333224 ~ 42336612 (-)
AMCG00004307 otof coding downstream 529149 42118653 ~ 42150175 (-)
AMCG00004320 fabp7,LOC108247051,LOC104945778 coding upstream 1483 42689048 ~ 42691079 (-)
AMCG00004319 hsf2 coding upstream 50938 42738503 ~ 42752817 (-)
AMCG00004323 LOC107675226,LOC107602186,LOC105017938,LOC107716890,LOC107697125,LOC107598086 coding upstream 213470 42901035 ~ 42901883 (-)
AMCG00004324 NA coding upstream 226577 42914142 ~ 42920194 (-)
AMCG00004322 NA coding upstream 235111 42922676 ~ 42925799 (-)
G7270 NA non-coding downstream 366206 42312919 ~ 42313118 (-)
G7268 NA non-coding downstream 414347 42264690 ~ 42264977 (-)
G7259 NA non-coding downstream 459140 42219958 ~ 42220184 (-)
G7243 NA non-coding downstream 589697 42087804 ~ 42089627 (-)
G7192 NA non-coding downstream 654584 41985243 ~ 42024740 (-)
G7335 NA non-coding upstream 5189 42692754 ~ 42719691 (-)
G7336 NA non-coding upstream 38347 42725912 ~ 42737850 (-)
G7419 NA non-coding upstream 548253 43235818 ~ 43237610 (-)
G7554 NA non-coding upstream 1180898 43868463 ~ 43868706 (-)
G7580 NA non-coding upstream 1395532 44083097 ~ 44089780 (-)
AMCG00004313 NA other downstream 148318 42376726 ~ 42531006 (-)
AMCG00004302 NA other downstream 611660 42064989 ~ 42067664 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other downstream 2830201 39841935 ~ 39849123 (-)
AMCG00004203 NA other downstream 5297371 37324010 ~ 37381953 (-)
AMCG00004336 NA other upstream 715388 43402953 ~ 43450255 (-)
G7608 NA other upstream 1833349 44520914 ~ 44522213 (-)
AMCG00004364 NA other upstream 1852598 44540163 ~ 44561575 (-)
AMCG00004372 LOC108423781,LOC105921217 other upstream 1935625 44623190 ~ 44712051 (-)
G7868 NA other upstream 3619361 46306926 ~ 46307319 (-)

Expression


Co-expression Network