AMCG00004319 (hsf2)


Basic Information

Item Value
gene id AMCG00004319
gene name hsf2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 42738503 ~ 42752817 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004319
CACCAATCAGCGCGCCGCTTTCTACCGGAAGTCGCCTGCCTTCTTGTTTCCGCTCGGATGACTGGCCTTGCTGCCTTGTCTGAAAGGGCTGCATcgcatttgttttaaacacgGTTAGCAACAAAATGAAGCAGAACTCCAACGTCCCCGCGTTTCTCACCAAGTTGTGGACGCTGGTCGAGGACTCCGACACTAATGAATTCATCTGCTGGAGCCAGGAGGGCCACAGCTTTCTTGTGCTGGATGAACAGCGATTTGCCAAAGAAATACTCCCCAAATTCTTTAAACACAACAATATGGCCAGTTTTGTCAGACAACTCAACATGTatgGATTTCGCAAGGTAATGCACATGGACACAGGCATTGTGAAACAGGAGCGCGATGGGCCAGTTGAGTTTCAGCATCCATTCTTTAAGCACGGGCAGGACGACTTGCTAGAGAATATCAAAAGAAAGGTTTCTTCAGCGAGACCTGAGGAAAATAAGATGCGTCAAGAAGACCTCTCAAAGATTCTGTCCAATGTTCAGAGTGTCCATGGGAAACAAGAGAGTCTCGATTCGAGACTCACCACCCTGAAGAGAGAGAATGAAGCTCTGTGGAGGGAGATCTCAGATCTGAGACAGAAACACACCAACCAGCAGCAGGTCATAAAGAAGCTCATCCAGTTCATTGTGTCTTTGGTTCAGAACAACCATGTCATGAGCTTGAAGCGCAAAAGGCCCTTGATGATGAATAGCAATGGAAACAAATCAAAGTTTATCCATCAAATTTATGAAGACTCGGTGGAGCACAGCAGTGTATCTGTTAATGGGTCAAACAATGTAAAGAAAAGTTCGGATGTTTCTGATGATGTTATAATCTGTGACGTAACTGATGATGCAGAAAATGCAGATGAAACTCCAACAAGAAATTCAGATCAAATGGACATTGAAATTGTTGAGGTGCAGATTGGCGGTGATGGGGGAGTGGTTTTGGATGGTGAGCAAAATAAACAGATGGCAGACTCGCCAAAACATGATCTTCAACAATCGCCCAAAGCCATGTCAGACAGCAGCCTCGTGATGAGCAACGCTCTGGTCGAAAAGCCTGTAGGACTCACCACAGAAGACCCGGTCCAGATGATGGACTCCATCCTCAATGAGAATGGAGCCATTTCCCAGAATATCAACCTATTGGGCAAGGACATTGAAATTGTTGAGGTGCAGATTGGCAGTGATGGGGGAGTGGTTGTGGATGGTGAGCAAAAGAAACGGATGGCAGACTCGCCAAAACATGATCTTCAACAATCGCCCAAAACCATGTCAGACAGCAGCCTCGTGATGAGCGACGCTCTGGTCGAAAAGCCTGCAGGACTCGCCACAGAAGACCCGGTCCAGATGATGGACTCCATCCTCAATGAGAATGGAGCCATTTCCCAGAATATCAACCTATTGGGCAAGGTTGAGCTGATGGACTATCTGGACAGCATTGACTGCACTTTAGAAGACTTCCAGGCTATGCTGTATGGCAAGCAGTTCAGCATTGATCCAGACATCTTGGACGACCTTTTCAGTCCAATTTGCCCGATGAGCACAAACGATTCCGGCGTCTCCACAGTTGAAGGGACTGAGCATCTAAAGGGAAATGTTGAGTTATCGTCCAAAGAAAACAAGACCGATACTGATAAGCAGCTGATCCAGTACACCACCTGCCCCCTCATGGCCTTCCTGGACGGGTGCTCCTCCACACTTGCCCCCGAGCCGGATGCTCCCGTTCCTGACCTGAGTGACTCACTGCTGCAGCACAGCGATGAGCCCCACAACCTGCTGGACTCGGCCCTGGAGCTGGAGGAGCCTCCGCGCAGCAAGCTGATTCGCCTGGAGCCTCTGACCGAAGCGGAGGCCAATGAAGCCACgctgttttatttctgtgaacTGAATCCCGAGGCGCCCGGGCTGGATGTTTAAAGGGAAACAAGAAAGATGGACCTTTGTATATATTCATCAAAATGatgaactatttattttccagtatcTTTTGGTACAGTTCTGTCCTGAATCACAAAGGAAACTTAAGACATTACTCTTCTCGTTGAGCAAATACTGTATGTCCATTTAAGTGTAGCAGGGATTGACCAAAACTCCAGTGCATCAGAAGGGATTTGACCATAAAGTGGTTGCTGGTTGACATTTTCCTCACTTTTGTACGAATTGTTAAATTGTTCCAAGTTGTTAATGTAAGGATTAAGTTTCATAGTTCCTACTGAAAAACCTTGAAGTTCTCAGAGTACAGTACTAGTCTGGATGTAAAAAGCAATGTAAGTGCCTGTATTTAGTTCATTTCTGACTGGCTTTTGTCACTTATTTTGAACTATGCTGGGCTCTCTGTATGTGGTTTTGCCTATGCTATGTTTGTCACCGATTATATCAAGCTTGGCAGTAACAATAAATTGCAGAGCATTAAGA

Function

symbol description
hsf2 Enables sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in eye; hindbrain; and otic vesicle. Orthologous to human HSF2 (heat shock transcription factor 2).

NR:

description
heat shock factor protein 2

GO: NA

KEGG:

id description
K09415 HSF2; heat shock transcription factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004319 True 2444 mRNA 0.46 14 42738503 42752817

Neighbor

gene id symbol gene type direction distance location
AMCG00004320 fabp7,LOC108247051,LOC104945778 coding downstream 47424 42689048 ~ 42691079 (-)
AMCG00004317 NA coding downstream 50938 42679324 ~ 42687565 (-)
AMCG00004316 clvs2,LOC107675233,LOC107675107 coding downstream 77896 42640409 ~ 42660607 (-)
AMCG00004312 NA coding downstream 371568 42364767 ~ 42366935 (-)
AMCG00004311 tcp1,LOC107669694,LOC107694622 coding downstream 376515 42355551 ~ 42361988 (-)
AMCG00004323 LOC107675226,LOC107602186,LOC105017938,LOC107716890,LOC107697125,LOC107598086 coding upstream 148218 42901035 ~ 42901883 (-)
AMCG00004324 NA coding upstream 161325 42914142 ~ 42920194 (-)
AMCG00004322 NA coding upstream 169859 42922676 ~ 42925799 (-)
AMCG00004325 NA coding upstream 222935 42975752 ~ 43035278 (-)
AMCG00004333 NA coding upstream 714352 43467169 ~ 43485249 (-)
G7336 NA non-coding downstream 653 42725912 ~ 42737850 (-)
G7335 NA non-coding downstream 18812 42692754 ~ 42719691 (-)
G7270 NA non-coding downstream 425385 42312919 ~ 42313118 (-)
G7268 NA non-coding downstream 473526 42264690 ~ 42264977 (-)
G7259 NA non-coding downstream 518319 42219958 ~ 42220184 (-)
G7419 NA non-coding upstream 483001 43235818 ~ 43237610 (-)
G7554 NA non-coding upstream 1115646 43868463 ~ 43868706 (-)
G7580 NA non-coding upstream 1330280 44083097 ~ 44089780 (-)
G7583 NA non-coding upstream 1424829 44177646 ~ 44177988 (-)
G7585 NA non-coding upstream 1583454 44336271 ~ 44336570 (-)
AMCG00004313 NA other downstream 207497 42376726 ~ 42531006 (-)
AMCG00004302 NA other downstream 670839 42064989 ~ 42067664 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other downstream 2889380 39841935 ~ 39849123 (-)
AMCG00004203 NA other downstream 5356550 37324010 ~ 37381953 (-)
AMCG00004336 NA other upstream 650136 43402953 ~ 43450255 (-)
G7608 NA other upstream 1768097 44520914 ~ 44522213 (-)
AMCG00004364 NA other upstream 1787346 44540163 ~ 44561575 (-)
AMCG00004372 LOC108423781,LOC105921217 other upstream 1870373 44623190 ~ 44712051 (-)
G7868 NA other upstream 3554109 46306926 ~ 46307319 (-)

Expression


Co-expression Network