AMCG00004320 (fabp7,LOC108247051,LOC104945778)


Basic Information

Item Value
gene id AMCG00004320
gene name fabp7,LOC108247051,LOC104945778
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 42689048 ~ 42691079 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004320
GATATTGCCCAGGGACGCTGCATACAGATACTGTACCTCTGAGCAACTTCATATCAACCTTTACCTCAGCACTTCTGCTCCCAGCATTTCCTTACATCTGCAACCATGGTCGACGCCTTCTGTGCCACCTGGAAACTGGTCGACAGTCAGAACTTTGACGAGTACATGAAAGCGCTGGGGGTTGGTTTTGCAACAAGACAAGTCGGCAACGTCACTAAACCCACTATCATCATCAGCCAGGATGGAGACAAGGTTGTTGTAAAAACGCAGAGtactttcaaaaatacagaaatttcCTTCAAACTTGGAGAGGAGTTCGATGAATCTACTGCAGACGACAGGAACTGCAAATCCACTGTATCCATGGACGGAGACAAGCTGGTGCATGTGCAGAAGTGGGACGGCAAGGAGACCAAGTTTGTCAGAGAGATCAAGGACGGCAAATTGATCATGAATCTGTCTTTCGGTGATGTCCAGGCAGTGCGTACTTATGAGAAGGCATAA

Function

symbol description
fabp7 Predicted to enable lipid binding activity. Predicted to be involved in negative regulation of cell population proliferation and nervous system development. Predicted to act upstream of or within cell proliferation in forebrain; neurogenesis; and prepulse inhibition. Predicted to be located in several cellular components, including cell projection; cell-cell junction; and neuronal cell body. Biomarker of glioblastoma.

NR:

description
PREDICTED: fatty acid-binding protein, brain

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005215 transporter activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG:

id description
K08756 FABP7; fatty acid-binding protein 7, brain

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004320 True 504 mRNA 0.47 4 42689048 42691079

Neighbor

gene id symbol gene type direction distance location
AMCG00004317 NA coding downstream 1483 42679324 ~ 42687565 (-)
AMCG00004316 clvs2,LOC107675233,LOC107675107 coding downstream 28441 42640409 ~ 42660607 (-)
AMCG00004312 NA coding downstream 322113 42364767 ~ 42366935 (-)
AMCG00004311 tcp1,LOC107669694,LOC107694622 coding downstream 327060 42355551 ~ 42361988 (-)
AMCG00004310 LOC107549081 coding downstream 352436 42333224 ~ 42336612 (-)
AMCG00004319 hsf2 coding upstream 47424 42738503 ~ 42752817 (-)
AMCG00004323 LOC107675226,LOC107602186,LOC105017938,LOC107716890,LOC107697125,LOC107598086 coding upstream 209956 42901035 ~ 42901883 (-)
AMCG00004324 NA coding upstream 223063 42914142 ~ 42920194 (-)
AMCG00004322 NA coding upstream 231597 42922676 ~ 42925799 (-)
AMCG00004325 NA coding upstream 284673 42975752 ~ 43035278 (-)
G7270 NA non-coding downstream 375930 42312919 ~ 42313118 (-)
G7268 NA non-coding downstream 424071 42264690 ~ 42264977 (-)
G7259 NA non-coding downstream 468864 42219958 ~ 42220184 (-)
G7243 NA non-coding downstream 599421 42087804 ~ 42089627 (-)
G7192 NA non-coding downstream 664308 41985243 ~ 42024740 (-)
G7335 NA non-coding upstream 1675 42692754 ~ 42719691 (-)
G7336 NA non-coding upstream 34833 42725912 ~ 42737850 (-)
G7419 NA non-coding upstream 544739 43235818 ~ 43237610 (-)
G7554 NA non-coding upstream 1177384 43868463 ~ 43868706 (-)
G7580 NA non-coding upstream 1392018 44083097 ~ 44089780 (-)
AMCG00004313 NA other downstream 158042 42376726 ~ 42531006 (-)
AMCG00004302 NA other downstream 621384 42064989 ~ 42067664 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other downstream 2839925 39841935 ~ 39849123 (-)
AMCG00004203 NA other downstream 5307095 37324010 ~ 37381953 (-)
AMCG00004336 NA other upstream 711874 43402953 ~ 43450255 (-)
G7608 NA other upstream 1829835 44520914 ~ 44522213 (-)
AMCG00004364 NA other upstream 1849084 44540163 ~ 44561575 (-)
AMCG00004372 LOC108423781,LOC105921217 other upstream 1932111 44623190 ~ 44712051 (-)
G7868 NA other upstream 3615847 46306926 ~ 46307319 (-)

Expression


Co-expression Network