AMCG00004322


Basic Information

Item Value
gene id AMCG00004322
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 42922676 ~ 42925799 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004322
GCGCAGCGCATTGTGGGAAACACGTGTGCAGCCTCCTCCGGGGAAcagatttcattatttgtagcaaattcagtttttaagaAAGGATTACAATCATTGTGTGTACTGAATGTCatatatgtgtctgtatgtaatAATACCTAACAAATCGACACCAGAATAACGAGTATTTACATAAACAAGTGTCATTCACGTGACAATATCATGTGATCTGTATTCAGCGCTCCGGTCTGAATCTCTTCCGGATTCGTTGTGTTGTTAATGCCACAGTATTAATCTGCTTATTATGGGTAGTACTTCGTAGAACAGACATTTAAACTGTCTGAAATGTCCTATGGATATACTGCAAAGCTCGTTATTTCACATACGATTAAGTCATCTTagtatgtttatgttttaaaccgatatacatatatagctgTATCTTGAAACCTGTTATGTCATGGCTGCTGTGGACagcttttactttttatatcGCGAAATTGAACGTTCGTGTAGTAGTTATGTCGAAGCCCTGGCTGTGGTTGGGGCTTTTTATACAGCCAGCAAAGCGTTTTCCTTAGTGAGGGACTGTTACAGTCTGATCAGGCTGCATTTCATACCCAGATTGATCAGCAGGGCAGACCTTGTTCAGCACTATGGCAAATGGGCAGTCATCTGTGGTGCTGTAGATGGTCTAGGAAAAGCTTACGCAGAGGAGCTAGCCAGGCGGGGTGTCAGCATCATCCTGATCTGTCCCGACAAGCGCAGCATGGATGACGTTGCCAGGGCCCTCACCGAGGCTCACAGGGTGGAGGCGGCCATCATTGAGGCAGACTTCAGCCAGGGCCGGGCGGCGTACAAGCCTATTACAGAGGCCCTCAAGGACAAAGAGATTGGCTTTCTTGTGAACAATGTGGCTGAATTGTACGGATACCCACAGCACTTTACCGAAGTGCCTGAAGACAAGCTCTGGgacattattaatacaaacattGCAGCTGCCACCATGATGGTGCATGTTGTTCTGCCAGGCATGTTGGAGAGGAAGAAGGGAGCCATTATAAATATCTCCTCTGGATCCTGTTGTAAACCCACCCCAAAGATGACTGCGTCCTCGGCATCCAAGGCCTATGTAGACCATTTCAGCCGTGCATTACACTATGAATATGCATCGAAAGGGATATTTGTGCAGAGCTTGGTGCCTTTTTACATCGCCTCTCAAATGAACGCCGTCACTGGAGTAATACGCAGTGGGTGGCTGGTACCTCACCCCCAGGTGTATGCGCGCCATGCAGTCTCCACTCTAGGAATCTCTCACAGGACCACTGGCTACTGGCCGCACTCCATACAGTTTTGGTTTGCACAGTACATGCCCGAATGGATGTGGGTTTGGGGGTCAAACATACTCAACCAAGCAACTTAAAAGAAGACCTCATCTTGGAAGACTTCCTTAAAAGCATAGGCTGGGTGGGTTGGGTGATGCGTGTATCATGCACAGTGTGAAAGCGTTTGTTCCATTGcctacagtgaatacaaatgtttgtGGATAATTATAATTTGCAACAACCACGCCTTTCCTCAAGCAGAATGTACATCTTGGTGTTTTGTAAAACATCAATCTGTTCATCAAAggttaatgttttatatatgtaccGCTAAAGCTTTACTCTGGAAAAGCCCAGTTATGTAAATCAACCATTACCAGTGAGTGCAGGGTTCCCTAGTGGTTTCTCATTTCTTTAgtgtattaatttgttaaattgggGTGTTTACAGCTTCTCCTATTTAGTCAGAATATTTCTTGTTTACTACTGTGGTTAGCATATATTTTTCTCAAGTCTGCATTTACTAAATCATGGATTTTAACTCCTGGATTGAATGGTAAGTATTAAGCTGTACATTCTGttcatacagtgtgtttattttgcctCATCATAGTTTGATTCTAGATtcagatttaggatttaggCAACACATTTGATTGTGTAATGCTGAATTACCTCCGCTCTTTCCGAATTGATCATAGCAGTATGATCTTTCCAAAACGTGGGTATTTTTTGTTTAGGACAGTGGAGAAATAAAGTGGTTGACCTTCTTTTGCAGATCGGTTGTAATGTGTCTACATGGTGTGGAATCCATGTCAATTATagtattttctgctttttccaattcatttaaaaataaatgtgttatttaaaaaatctgacaAATAAAGACCTTTACTACCTA

Function

GO:

id name namespace
GO:0005739 mitochondrion cellular_component
GO:0016229 steroid dehydrogenase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004322 True 2211 mRNA 0.42 4 42922676 42925799

Neighbor

gene id symbol gene type direction distance location
AMCG00004324 NA coding downstream 2482 42914142 ~ 42920194 (-)
AMCG00004323 LOC107675226,LOC107602186,LOC105017938,LOC107716890,LOC107697125,LOC107598086 coding downstream 20793 42901035 ~ 42901883 (-)
AMCG00004319 hsf2 coding downstream 169859 42738503 ~ 42752817 (-)
AMCG00004320 fabp7,LOC108247051,LOC104945778 coding downstream 231597 42689048 ~ 42691079 (-)
AMCG00004317 NA coding downstream 235111 42679324 ~ 42687565 (-)
AMCG00004325 NA coding upstream 49953 42975752 ~ 43035278 (-)
AMCG00004333 NA coding upstream 541370 43467169 ~ 43485249 (-)
AMCG00004337 slc35f1,LOC107727669,LOC107678858,LOC107743307,LOC107697151 coding upstream 559470 43485269 ~ 43514436 (-)
AMCG00004334 slc35f1,LOC107697151,LOC107678858,LOC107743307,LOC107549682 coding upstream 594180 43519979 ~ 43539410 (-)
AMCG00004339 NA coding upstream 667354 43593153 ~ 43604125 (-)
G7336 NA non-coding downstream 184826 42725912 ~ 42737850 (-)
G7335 NA non-coding downstream 202985 42692754 ~ 42719691 (-)
G7270 NA non-coding downstream 609558 42312919 ~ 42313118 (-)
G7268 NA non-coding downstream 657699 42264690 ~ 42264977 (-)
G7259 NA non-coding downstream 702492 42219958 ~ 42220184 (-)
G7419 NA non-coding upstream 310019 43235818 ~ 43237610 (-)
G7554 NA non-coding upstream 942664 43868463 ~ 43868706 (-)
G7580 NA non-coding upstream 1157298 44083097 ~ 44089780 (-)
G7583 NA non-coding upstream 1251847 44177646 ~ 44177988 (-)
G7585 NA non-coding upstream 1410472 44336271 ~ 44336570 (-)
AMCG00004313 NA other downstream 391670 42376726 ~ 42531006 (-)
AMCG00004302 NA other downstream 855012 42064989 ~ 42067664 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other downstream 3073553 39841935 ~ 39849123 (-)
AMCG00004203 NA other downstream 5540723 37324010 ~ 37381953 (-)
AMCG00004336 NA other upstream 477154 43402953 ~ 43450255 (-)
G7608 NA other upstream 1595115 44520914 ~ 44522213 (-)
AMCG00004364 NA other upstream 1614364 44540163 ~ 44561575 (-)
AMCG00004372 LOC108423781,LOC105921217 other upstream 1697391 44623190 ~ 44712051 (-)
G7868 NA other upstream 3381127 46306926 ~ 46307319 (-)

Expression


Co-expression Network