AMCG00004327 (man1a1,LOC102782693,LOC106607779)


Basic Information

Item Value
gene id AMCG00004327
gene name man1a1,LOC102782693,LOC106607779
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 43216106 ~ 43234293 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004327
ATGCGTTTCAGTGGGATTGGCAGGAACTGGCCCTGGGCGTCGGGTGGCAGCAGTATCTTGGCAGAATATGGAACTCTCCATCTGGAATTCATGCACCTGAGTAAACTTTCTGGGAACCCTGTTTTTGCAGAGAAGGTACAAATTCAATACCACGTGTCAGTCGGAGGACTCGGGGACAGTTTTTATGAATATTTGCTCAAGGCGTGGCTGATGTCGGACAAGACCGACGAAGAAGGCAGAAAACTGTATTACGACGCTGTTCAGGCCATCGAGACAAGCCTGATCAGGAAGTCCAGCAACGGTCTCACCTACATTGCCGAATGGAAGGGGGGCCTACTGGAGCACAAGATGGGCCACCTGACCTGCTTCGCTGGGGGCATGTTTGCGCTGGGCTCAGATGGAGCCCCGAATGACCGGACTGGCCACCAGATGGAGCTGGCAGCGGAGATCGCTCGGACTTGTCACGAGTCGTATGCCCGCACCACCCTCAAGCTGGGCCCAGAGGCCTTCCGCTTCGACGGGGGCGTGGAAGCCATCGCCACACGTCAGAATGAGAAGTACTTCATCCTACGGCCCGAGGTCATCGAGACCTACATGTACATGTGGAGGTTTACTCACGATCCCAAGTACAGGCAGTGGGGCTGGGAGGCTGTGCAGGCACTGGAGCAACACTGCAGAGTAGATGGAGGATACAGCGGGATTAGAGATGTTTACGCCAGTCACCCCAACTATGATGATGTGCAGCAGAGCTTCTTCCTGGCGGAGACACTCAAGTATCTCTATTTGCTGTTCTCTGAGGACGACCACCTGCCCTTTGAGCACTGGGTCTTCAACACCGAGGCCCACCCATTCCCGGTCATCACCAGGGAGAACACGGTCAAGCCCCAGCAGCAGTTATAA

Function

symbol description
man1a1 Predicted to enable mannosyl-oligosaccharide 1,2-alpha-mannosidase activity. Predicted to be involved in N-glycan processing. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane and endoplasmic reticulum. Orthologous to human MAN1A1 (mannosidase alpha class 1A member 1).

NR:

description
mannosyl-oligosaccharide 1,2-alpha-mannosidase IA

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity molecular_function

KEGG:

id description
K01230 MAN1A_C, MNS1_2; mannosyl-oligosaccharide alpha-1,2-mannosidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004327 True 900 mRNA 0.55 6 43216106 43234293

Neighbor

gene id symbol gene type direction distance location
AMCG00004328 man1a1,LOC107833082,LOC106959811,LOC103360425,LOC107083523 coding upstream 39047 43157068 ~ 43177059 (+)
AMCG00004326 NA coding upstream 101835 43113684 ~ 43114271 (+)
AMCG00004321 NA coding upstream 240321 42927068 ~ 42975785 (+)
AMCG00004318 serinc1,LOC107598085,LOC107716862,LOC107675084 coding upstream 479537 42732816 ~ 42736569 (+)
AMCG00004315 NA coding upstream 581138 42591866 ~ 42634968 (+)
AMCG00004331 NA coding downstream 61359 43295652 ~ 43317408 (+)
AMCG00004330 fam184a,LOC106607780,LOC106571378 coding downstream 95079 43329372 ~ 43338860 (+)
AMCG00004329 LOC107549683 coding downstream 116486 43350779 ~ 43362687 (+)
AMCG00004332 NA coding downstream 146377 43380670 ~ 43411096 (+)
AMCG00004335 NA coding downstream 292687 43526980 ~ 43534658 (+)
G7293 NA non-coding upstream 740220 42475576 ~ 42475886 (+)
G7288 NA non-coding upstream 836145 42376625 ~ 42379961 (+)
G7278 NA non-coding upstream 850452 42364868 ~ 42365654 (+)
G7272 sod2,LOC102787761 non-coding upstream 879463 42333425 ~ 42336643 (+)
G7231 NA non-coding upstream 1126453 42087791 ~ 42089653 (+)
G7418 NA non-coding downstream 1525 43235818 ~ 43237653 (+)
G7441 NA non-coding downstream 112057 43346350 ~ 43346959 (+)
G7485 NA non-coding downstream 357457 43591750 ~ 43595078 (+)
G7569 pvrl1b,nectin1,LOC107563312,LOC107758086,LOC107691861,LOC107670612,LOC107561861 non-coding downstream 844052 44078345 ~ 44088037 (+)
G7584 NA non-coding downstream 1102158 44336451 ~ 44336681 (+)
G7329 fabp7,LOC108247051,LOC104945778 other upstream 524997 42688779 ~ 42691109 (+)
AMCG00004304 NA other upstream 999744 42210430 ~ 42216362 (+)
G7094 NA other upstream 1708875 41459576 ~ 41507231 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 2874871 40326410 ~ 40341235 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 5368386 37832623 ~ 37847720 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 1383892 44618185 ~ 44640732 (+)
AMCG00004380 NA other downstream 2727717 45962010 ~ 45968306 (+)
G7999 NA other downstream 4912595 48146888 ~ 48147156 (+)
AMCG00004421 NA other downstream 5662824 48897117 ~ 49026355 (+)
G8099 NA other downstream 5698157 48932450 ~ 48934095 (+)

Expression


Co-expression Network