AMCG00004329 (LOC107549683)


Basic Information

Item Value
gene id AMCG00004329
gene name LOC107549683
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 43350779 ~ 43362687 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004329
TCTGAATCACGCTGTTTACTTCCGCATTAGAGTCGGTCCGCTGGACGTGTAgcgggaaaatatatataagccaTACATGCTCCCCACCCCGCAAACGGGTGAAATGGTGTTGAGCTCGGAGCAGGTGGCCTTCATCGGGCAGGTGTTTGAGTCCTATGCGCTGGAGCAGCACCGGCGCGACGTCCTGCACGTCCTGGAGCAGCCCGACGAGCATGCGCACTACTCCCTCACCGTGAACGCCATGACACTGTTCGAGGCCAACATGGAGATCGCGGAGCTCTTTAACGCTTTTCCCAACAAGGTTCTCCCTATATTTGATAATGCTTTACACAGAGCTGCCGTGTCCATTTTGCAGTCTGCCTCCCAGCAAGGCGgcttaaaaatgaaacagaacCTGCACACAAGGATATCAGGTTTGCCAGTGTGCGCCGAGTTGACGAGGGACCGCATTCCCACCTGCCTGGACACAGGGCACTTCCTGTCGGTCACCGGCACGGTCATTCGCACTAGTATGACCAAGGTGCTGGAGTTTGAGAGGGACTACATGTGCAACAAGTGCAAGCATGTGTTCTCCGTCAGGGCTGAATTCGAGCAGTACTACAGCTTTAGCCCCCCACGCTGCTGCCCCAGCGAAGAAGCctgcagctccttcaagttCACCTGCCTGTCGGCTAGCTCCTCGGCCCCCGGGAGCTGCAGGGATTACCAGGAGATCAAGATCCAAGAGCAGGTCCAGAGATTGTCTGTGGGAAGCATCCCTCGGTCCATGATGGTTATTCTGGAGGATAATCTTGTTGATAGTTGCAAATCCGGTGACGACATCACAGTGTACGGTGTTGTGATGCAGCGGTGGAAGCCACTCTGTCAGGATTCCCGCTGTGACCTGGAGATAGTGCTGAAGGCCAACTTCATTGAGGTCAATAATCAACAGTCTACAGCTGCGGTGGTCATTGAGGATGTGCAGAAGGAATTTGAACAGTTCTGGGAGACGCATAAACACAACCGTTTGGCAGGCAGAAATCAGATTCTCATGAGCCTCTGTCCCCAAGTGTTTGGAATGTATGTAGTGAAGTTGGCGGTGGCCATGGTGTTGTCAGGTGGGGTGCAAAGAATTGATGCATCTGGAACAAAGGTGAGAGGTGAATCGCACCTCCTGCTGGTGGGGGACCCTGGCACCGGGAAGTCTCAGTTCCTGAAATACGCTGCGAAGATCACTCCTCGATCTGTCCTCACCGCAGGGATCGGCTCCACCAGCGCAGGGCTGACTGTGGCCGCAGTGAAGGACTCTGGAGAGTGGCACCTGGAGGCGGGGGCCCTGGTGCTGTCTGACGGGGGGTTGTGCTGCATCGACGAGTTCAACAGCATTAAAGAGCACGACCGGACCAGCATCCACGAAGCCATGGAGCAGCAGACCATCAGTGTAGCCAAAGCTGGCCTGGTCTGCAAGCTCAACACCAGGACCACCATCCTGGCCGCAACAAACCCCAAAGGGCAGTACGACCCCaacgtgtctgtgtctgtgaacgTTGCTCTGGCCAGCCCGCTGCTCAGCCGCTTCGACCTGGTTCTGGTGCTGCTGGACACGAGAAATGAGGAGTGGGATCGCATCATCTCCTCCTTCATCCTGGAGAACAAAGGTGCACCCACTGTATCTGATAATCTGTGGAGCATGGAGAAGATGAAAGCTTATTTCTGTCTCATTAAGACTTTGCAGCCCAAAATGTCAGAGGAAGCCAATATGATCCTGGTGCGATACTATCAGCTCCAGCGCCAGAGCGACTGCAGAAACGCAGCCAGAACCACCATCAGGATGCTGGAAAGTCTGAGCCGCTTAGCAGAAGCTCATGCTAGACTGATGTTCAGGGACACTGTCACAGTGGAAGACGCAGTCAGTGTGGTTTCTGTCATGGAGTGTTCGATGCAGGGAGGTTCACTTCTGGGAGATGTGAACGCGTTGCACACGTCATTTCCCGATGACCCTTGTAAGCAGTATAGGATGCAGTGTGAACTTGTTCTCGAAGGGCTTGGGCTGAGACATTTTCTCAGTGAGGAACTGGAAAGACTTTCCCGGCTGCAAACTAAGTGTATGGATTTGTATGGACGACACAAGAGTTCTCGCTGTGAGGAAGAGCAGAATACCAGAGCTGACCAGTCAGGCCCAAATGTAGAATCGCTGCCTCGCAATCAAAAAGGATCAATCGGGGAGACAGCCTCAGAGACTGGGCTTGACTGGTTCAACTCCTTGGCCAGTACCAGAGAGCCAGAGACAAGTTTATCTCTGTCACCAATTGAAAAGTCACCAGAGAAAACTGCAGCTGAGCCTAGAGACTTACTGGCAGATAACAGCATCCCTCCAAGACCTGGGAATGTTACACATGAGAGGAAAGAGAGGCCTCTGAAGGATAAACTGCCCAGATATGCTGTTAAAGAAGCAACTGGTTCAAAACATGAGGAACGCAAGTCACACACAGATGAGATGGGCCTTGTAGTTGAAAAGGTGTCCAAGAATCTGCACAGCAAGCGGACGAAGAAGCTCAGGCATCTCCTGGATGTGGAAAAGCCTGAAGGGAATAAAAAGGATTTAACAAAATCCCGCAGTTCTGATATGATTGAGAAACCTGTCGATGGTTTGGAGTTGACTTTTTCTACAGGTGGCCCCCCGTCGCATAGCACACCCATGACAGGGAAAAAACGCACATCCTCAGTGGAGAGGGGCAGGGCGGCTCGGGTGGAGTCCTCAGAGGACTGCAGTGAGCCCCACAGAGATCAGATCCCTGACACCCTGCGGACCAGGCTGAGCACTTTCACCTTCCAGCCCAAAGAGAGACTCGCTCACTCTGCCAGCGACAGCAGTGTGTCCAGCCTCTCAGCCCAGCACGACGGGGGCATGGATTCCCTGCCGGGCGACCAATCACACGACTCTGCTCAGCACAAGGATAACTGCCCTGCTCGCCAGGAGCCCAGGCAGAGTGTCTCTCTGGAGGAGGACAAGAATCGGCCTGAAAAGCCTCTGGACCAgaacaccaacacacacatgcgTGCAGAGGCGCTGAGGGAAGGTGGGGGCTCAAAAGCACACAAACCACAGCAGTCATTACAGAAACTGAGTGGAAGAGCTGgagctgataatgggcctcctGAATCCACAGGGGGTCAGGTAAAAGGCCAGGTAAAGAATGACACCAACAGGGCTGTGGTGTCCTCCTCTACTTTAGCCAAATTGTCCAGGTTCTCCTTCACTTCCACAGAAGGGAAATCTCAAGGAGCAGGCGCTGATCAGACCAGTGCTCTAGTGCAGGAGGACAGGAAGTGCTTAAATCCAACAACAAAGAGCACTGGCTATTCCAGAAAAAGGAAGACATTTGAATTAGGGTTAACTGGTTTAGGATCGGTGTATTCAAGTAAGTCTTTGTTCAGCTCTCCATTGGTAGATGATGGAGTCTTAGATGTTGACTGGGAGGAGGAGTGTGGTAAAAAAGCTAAATTGTGAAAGACAATGTttctatatctgtatatatatttatgtaaatatattgaaattacTGAAAGTCATAAACAttgctttgtatgtttttggAAGATGCTAAATGTATCTTGATGCACTAAATTTGTCCTATCCTCCTTGTTAAATTatcacatttcagtttcaaattgaaattcaaaaatCCAAATCACTTAATAGTTCCCAGCAAACTGCATACTGGTAATAATGGTAAGTAGCTTAGTATGTGTCAGTGATGCAGCCTGTCTGAGAATTCTTAATCATCCCCATAAGCCATGTGGAAGACAACAGGTGTTACATTTTTAGTTGTCTTCaggctaattaaaaaaaacaatacaaccatATCAGAGGTGATTTTAAGAGTTTAAGAGGTCTGGTTCAGGATGTCTGTACAGGGCTCTAATGTTTGTGCTTCATGGATAACACCAGATCTGAGACCCACtgctctattttatttttttataaataataaattaaatatctgaCATAATTTCTCAAGTGATTTTTCAATGTATGCAATCTATGCACAACTgg

Function

NR:

description
PREDICTED: DNA helicase MCM9-like

GO: NA

KEGG:

id description
K10738 MCM9; DNA helicase MCM9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004329 True 4036 mRNA 0.50 13 43350779 43362687

Neighbor

gene id symbol gene type direction distance location
AMCG00004330 fam184a,LOC106607780,LOC106571378 coding upstream 11919 43329372 ~ 43338860 (+)
AMCG00004331 NA coding upstream 33371 43295652 ~ 43317408 (+)
AMCG00004327 man1a1,LOC102782693,LOC106607779 coding upstream 116486 43216106 ~ 43234293 (+)
AMCG00004328 man1a1,LOC107833082,LOC106959811,LOC103360425,LOC107083523 coding upstream 173720 43157068 ~ 43177059 (+)
AMCG00004326 NA coding upstream 236508 43113684 ~ 43114271 (+)
AMCG00004332 NA coding downstream 17983 43380670 ~ 43411096 (+)
AMCG00004335 NA coding downstream 164293 43526980 ~ 43534658 (+)
AMCG00004342 gopc,LOC106607787,LOC107603060,LOC107678854 coding downstream 248094 43610781 ~ 43611095 (+)
AMCG00004338 LOC106571388,LOC106607787 coding downstream 262928 43625615 ~ 43631896 (+)
AMCG00004343 NA coding downstream 308333 43671020 ~ 43721979 (+)
G7441 NA non-coding upstream 3820 43346350 ~ 43346959 (+)
G7418 NA non-coding upstream 113126 43235818 ~ 43237653 (+)
G7293 NA non-coding upstream 874893 42475576 ~ 42475886 (+)
G7288 NA non-coding upstream 970818 42376625 ~ 42379961 (+)
G7278 NA non-coding upstream 985125 42364868 ~ 42365654 (+)
G7485 NA non-coding downstream 229063 43591750 ~ 43595078 (+)
G7569 pvrl1b,nectin1,LOC107563312,LOC107758086,LOC107691861,LOC107670612,LOC107561861 non-coding downstream 715658 44078345 ~ 44088037 (+)
G7584 NA non-coding downstream 973764 44336451 ~ 44336681 (+)
G7614 NA non-coding downstream 1167653 44530340 ~ 44543143 (+)
G7638 NA non-coding downstream 1211644 44574331 ~ 44574997 (+)
G7329 fabp7,LOC108247051,LOC104945778 other upstream 659670 42688779 ~ 42691109 (+)
AMCG00004304 NA other upstream 1134417 42210430 ~ 42216362 (+)
G7094 NA other upstream 1843548 41459576 ~ 41507231 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 3009544 40326410 ~ 40341235 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 5503059 37832623 ~ 37847720 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 1255498 44618185 ~ 44640732 (+)
AMCG00004380 NA other downstream 2599323 45962010 ~ 45968306 (+)
G7999 NA other downstream 4784201 48146888 ~ 48147156 (+)
AMCG00004421 NA other downstream 5534430 48897117 ~ 49026355 (+)
G8099 NA other downstream 5569763 48932450 ~ 48934095 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000029_03291762_03308373 NA coding CI01000029 null 3291762 ~ 3308793 (+)