AMCG00004331


Basic Information

Item Value
gene id AMCG00004331
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 43295652 ~ 43317408 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004331
GTGATCTATGCACTGAACACCAAGAACGACGAGCACGAGGCTGCCATCCAGACCCTGAAGGAGGCCCACGAGGAAGAGGTGCAGCAGATCCTGTCAGAGACTCGGGAGAAGATCCTGCAGTATAAGAGCAAGATCAGTGACGAGATGGACCTGAAGCGCCGCATCCAGTCCCTGGAGGAGTCCATGGAGCTGCACGAGCGCATGAAGCGGCAGGCGCTGGCGGAGTTTGAGACCTACCGGCAGCGCGTGGAAGACATGCAGCTCTGCACCGAGGCCCAGCACACCCAGAGGGTCGTCACCATGTCCCGGGAGGTGGAGGAAATGCGCCGCAACTTTGAGGAGAAGCTGCGCTCCTTTGCCCAGGTGCAGGCGCAGTTCGAGCAGGAGAAGCGGCAGGCCCTGGAGGACCTCCGGGCCTCCCATCGCCAGGAGATCCAGGAGCTCCTCCGCAGCCACCAGAGCCAGAATGCCAACTACAGCAAGGACCAGGAGAAGCTGGGCCAGCTGCACAAGGCAGAGGTGGAGTCACTGACGGAGCGCGTGGAAGAACTGAAGCAGGACAAGAAGCGGCTGGTGGAGGAGTACGAGGCCAAGCTGAGCAAAGCGCAGGCCTTCTACGAGCGTGTGCCTTGCATAGCAAACACGATAGAGCAATGCAACTTCAATAACAATTCTTGTTTAACCACATGCTCTGGGCTGGTTCAGGACCTCCAGAAGCAGCTGGATGAGGCCACGCAGGATGCCGAGATCCTCATGATCAGGCAGAAGGAGACGGAGTGTGAGCTGGAGGCCACCCGAGACCGCGTCCAGCAGCAGGCCACTGAGATTCTCCTCAAAGCCAGCCACATTGGGACCCTTCAGGCTACTCAAATGACCCACGAAGCTGCAATAAGGGACCTGGAGTCTGAGAAGTCCCGGCTGAAAGACAAGATGTCCCGACTGGAGGAGGAAAGGAGTGTGCTGCAGAACAAGACGCAGGCTCTGGATGAGCGACAGAAGCAACAAATTCTCTCCCTGGAGAAGGTGCTAAAGGAGGAGAAGCAGAGCTATGAAAAGGAGATGGTAAGCATTCGTGCCAAATATGAGGAGGATGCCGTTCACTTCAAAGAGGCCCAGGCCAGGGCGCTGGAGGAGTTGTCAAAAAAGCATCGAGCCACCCTAGAGATTACGCAAAGCACAGCCGACAGGGAGAAGAAAAGACTACAAGTGGAGATGGAGCAGCAGTTTGAGAAGGAGAGAATGTCCCTGGAAGAGCAGAAAAACCGACTCCGACAGCAGCTGGAGAACCTTAGGGAAGAGTTGACAGCCAAGCTCGACTCAGCCAATCAGGAGGCAAGCACTCCTTCACTCGAATTAATATGCTGCAGTGTTGTCCGTCTGCAGGAGCTTGTGAGAAAGAGCGAGCAGGGGCTGGGGTCAGCTGAAGGCCACATATCCAGCCTGCAGGAAGCCCAAGAAAAACTGCTCAATGAGCTTGACTCAACCAGAGCGAGGCTAAGAGAAACCAGTAACTTACTCTCTGCCCTACAGGCAGAAATGGAGAAACAGAAACACCAGCATGAAGCGAAGCTGATTTCAATTAGGGAAGAAGAGAAGCTCAAAATGGACAAGATGGCCCTGGAGCTAGAGCTGAAGTGGACAGAAACCCTCAGCGTGCTTCTGGTCCAGGGCCGCAGCTGTGGCTTGTGGGGACTAACAAAGTGGGACTCCTGTGCCTATCTGTTCAGACAGGAGTGTAAGAAACTGCGTGAGGAGCTGAGAGAGGAGCACGACGACGACAAGAAGGCTGCCATGGCACAGCTCTCGCAAAACAAGGAGCAGGAGATGAGCGCCGCCAGGGAGGGCTGGCAGAAAAAAGTGGAGGACCTGCTTGACCAGATCTCCTTACTGAAGCAGAGCCTGGAGATGCAGCTCTCCCAGTCCCAGAGTGCACTCCAGCAGCTGCAGGCCCAGTTCAGTCAGGAGCGCGAAcacctccagcagcagctgcaggagatgGAGCTGGAGCACCAgcagagggagcagtccctggaTGAGGCACACTGCATGGCCATGCACAACATGGAGGAGGCCAGGCAGCAGGACCTCAAGGAGTTGGAGGAGCGACTGAGACAACAGCACTACGACGAGCTGCAGTCCCTAAGAGAGGCCCACCGGCAGAATATCGAGATCCTGAAGCAGCAGTCGGAACAGGAACTGCAAACTCTGCGCTTTGAGCTGGAGGATGAGGGGAAAGCAATGCTCGCTTCGTTGCGCTCGGAGCTCAATCACCTCCATGCATCTGCCATCGAGCACCTGCGGCAGAGTCACCAGCAGGAGACAGAGGCTGCGAAGCTGGAGCTGGAGAACGCTTTGGAGCAGAGCAGGCAGCAGGTAGGCAAATTGCCCTTCAAGGCAAGGATCAATACTGATAAAAGACACCTGGCTTCAAGTGAGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004331 True 2439 mRNA 0.56 12 43295652 43317408

Neighbor

gene id symbol gene type direction distance location
AMCG00004327 man1a1,LOC102782693,LOC106607779 coding upstream 61359 43216106 ~ 43234293 (+)
AMCG00004328 man1a1,LOC107833082,LOC106959811,LOC103360425,LOC107083523 coding upstream 118593 43157068 ~ 43177059 (+)
AMCG00004326 NA coding upstream 181381 43113684 ~ 43114271 (+)
AMCG00004321 NA coding upstream 319867 42927068 ~ 42975785 (+)
AMCG00004318 serinc1,LOC107598085,LOC107716862,LOC107675084 coding upstream 559083 42732816 ~ 42736569 (+)
AMCG00004330 fam184a,LOC106607780,LOC106571378 coding downstream 11964 43329372 ~ 43338860 (+)
AMCG00004329 LOC107549683 coding downstream 33371 43350779 ~ 43362687 (+)
AMCG00004332 NA coding downstream 63262 43380670 ~ 43411096 (+)
AMCG00004335 NA coding downstream 209572 43526980 ~ 43534658 (+)
AMCG00004342 gopc,LOC106607787,LOC107603060,LOC107678854 coding downstream 293373 43610781 ~ 43611095 (+)
G7418 NA non-coding upstream 57999 43235818 ~ 43237653 (+)
G7293 NA non-coding upstream 819766 42475576 ~ 42475886 (+)
G7288 NA non-coding upstream 915691 42376625 ~ 42379961 (+)
G7278 NA non-coding upstream 929998 42364868 ~ 42365654 (+)
G7272 sod2,LOC102787761 non-coding upstream 959009 42333425 ~ 42336643 (+)
G7441 NA non-coding downstream 28942 43346350 ~ 43346959 (+)
G7485 NA non-coding downstream 274342 43591750 ~ 43595078 (+)
G7569 pvrl1b,nectin1,LOC107563312,LOC107758086,LOC107691861,LOC107670612,LOC107561861 non-coding downstream 760937 44078345 ~ 44088037 (+)
G7584 NA non-coding downstream 1019043 44336451 ~ 44336681 (+)
G7614 NA non-coding downstream 1212932 44530340 ~ 44543143 (+)
G7329 fabp7,LOC108247051,LOC104945778 other upstream 604543 42688779 ~ 42691109 (+)
AMCG00004304 NA other upstream 1079290 42210430 ~ 42216362 (+)
G7094 NA other upstream 1788421 41459576 ~ 41507231 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 2954417 40326410 ~ 40341235 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 5447932 37832623 ~ 37847720 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 1300777 44618185 ~ 44640732 (+)
AMCG00004380 NA other downstream 2644602 45962010 ~ 45968306 (+)
G7999 NA other downstream 4829480 48146888 ~ 48147156 (+)
AMCG00004421 NA other downstream 5579709 48897117 ~ 49026355 (+)
G8099 NA other downstream 5615042 48932450 ~ 48934095 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000029_03166200_03260925 FAM184A coding CI01000029 null 3166200 ~ 3260925 (+)