AMCG00004336


Basic Information

Item Value
gene id AMCG00004336
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 43402953 ~ 43450255 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004336
ATGAATGCGTATGAAGGGAATGAAAGCCAGGGAGAACACTTGCAGCACAAAGTGGAGCAGTGCCTTGAGGATGGCGTCAGGCTGTCCATGCTGGACATGAAACGGCTGGAATGTGACAACACGCGTCTCCAGGAGCAGCACAGCCAGAGCACCAAGCCCTCTAACCTCACGTCCAGCATGGAGAAAGTGCAGCACATGACTCGCTCGGCCATCAGGAGGGCGTCCACCATCGAGGTGAACCCACAGACCAAACAGAACCTCCAGGAGCTTTTTGTCAATTTCTGTCTCATCTTGATTTGCCTCCTGCTTATCTACATCATTGTGCTGCTGCTCTGA
>TU9174
CCCCGCCCCCCTGATCTTATTCCCATAAACTTTGTGACATACTCAGAAAAGTTGCCAGAGAACCTCCAGATCTGTTAGACAAAAGACATTTTCCCATAGTCCACCAAGGCTTGCGTCTGTGACCTGCTGACCGCTGCTGAAGCTGAAGAGGCCAGAGCGAACCCGAGGCCGAGGAAGCAGCAGGATGGAGTAGCGGTCTTAAAGCTCATCCACTGTGCCAGGCCTGAGGCTGCCACCTCTGGGAGGAGACCCCCACAGCAGCCCTGCACAGAGCCACTGACAGCAGAACCCTGTTCACCATGGATTTGGCGAGCAACAGAGGCCTCAATCTGCTACTCAACTTCCTGCTGATTGTCCTCGTTCTCATACTGATGCTCATACTAGTGAAGCTCATGTGACAGCCCTGCCGCTGAGCAGAAATGACTTAGTGACAAGACCCCGGCGGACACGGTTTGTGCATGCTCACCCTGCAGAGACCCCACAAACTCCCCGCCTGCCACTTCAGcctagaaaaagaaaaaataccgCTTTACGTGTTTGTAGTGCCGAAGACAGTCgattcatacatttgtttaaaattaaaacacagctttacattttaggacagcccaAAAGGAGCAATAAAAGCAGGCAGGTTGGTTTTACTGGACAACTTAAAGCCCTTTCACAAAAAGATACTTCAAATTGAAAGCTAAATAAACCACCAATATAAgattttttattactattacttttaTATCAAGCACAAATTACTGGTTCTGGATTTGGCAAAAAATCGAGAAATGTATACCCCAAGAAGTTTCTGATcaagataaattaaatatacatcaacctgttttaattcagataggaaattgtatttgttttccagttaaGTCGTTTGCACACAGCTTATAGCAACCTTACAAGGatcataataaaattaaaccgAAGAAAAAACTGTCAGCTTTAGCAGCACTTTCAAATGAAGTCTAGAACAATCCCAGTCAATGCGAGAGTCTCCCTCTGGTGGCAAAACTTAATATCAGTAAGGAAGTTAGTATAATTGTTAGATGCAATGACATCTTCTAAGTTCGTTGATGAATGTGCTGATCTACAATCGCTGAGTTGTTGCAGTGACGATGACACTTGAGATCAGATGAAGATTCTTAGTTTAGGAAACACAGTTCTGTTACATGTGCCAACCTTTTTATATTAGTAAGATGACGTGGATATTTTAAATCATCTGGGCTCATCCCCGTGGCCAACTTGCCATTTTTCAAATACCATTTCCCCTACAGCTGTTAAGGATTCAGATCGTTTGTGTGtggctttattttttacattttctttgtttttaatttgtactgtGATGCCTTTTCTATATCAACCCTTACTACATACTGCTCCTGTTTCCAAGCCGTGCCCTGTTGTATCCAGGTGTGTTACAGCTGTGGAGTTCACCTCTTTATGTTTTAGGGAACGCCAGTACAGCAGCTCCGCCAACTGCAGCTTTAATATTCACAGACCCACTGATGTATGTTTTACACACATCTCTCTCCACTTGCAGACACAAACGGAACAAATATATCTCTGTGCAGGAAAATTTGTATGCCTCTTTTGTTGCTGACAGATGTAGGCCTATGTTTTGTTCCTTAAGTAAACGCAGCAAAAATGATAGACAGCTGGGGGAGCAGCCCTTTGAGCCTCGCTCTGATGCTGCAGAATTGGGCTCTGTGTCCCCTGATGTCTTGACATGACTACATCACTGCCACAGCCTGGCGCCTCACAGGGCGGGGGCTAAAAAGCACCTTGAACTATCATCCACAGTACCCCAGTTATACACATACTGATTGGAGACATTGTATGTTTACTGTGTACACTATATTTAAACTCTTTTCATTACTCCAatttgttgttaatttttttttaaatgtcatggtTTTCAGTTCTCCTCCTTAACTCCTATTTACTGGTATACAGATGCTTATTGGTGCCACTGTATAGATTAAATGTACTTCAGCAGAGTATAGAGAAATATAGCACATTTGGTCATAAGTTCATGACTTGATGACTatgtaaaataagtaaagttGTTGATCGGTAAGAATCTGTGCTTACAAGAGTAATTAGACATTTATACAAACTTAGGAAACCTTCGAGAAGGTCATGACCTCTCAGACAGAGGACGCGATTTCATAATTTAGTGCTAGAGAGAGGCCTTTAGTTGCAATAAAGTTAATCAAACACcaataatatataaactttAAACTTCCCAATTGTActgcactttatatatatatatattcttcctaaagttatattttttattatgaaatatagtCCAATAAATCCTGTTATCCATGTTGACATCtgtgaaatatatgaaaattaaaCTCCAGAGCACCGCTCTGCTTCCTG
>TU9175
CCCCGCCCCCCTGATCTTATTCCCATAAACTTTGTGACATACTCAGAAAAGTTGCCAGAGAACCTCCAGATCTGTTAGACAAAAGACATTTTCCCATAGTCCACCAAGGCTTGCGTCTGTGACCTGCTGACCGCTGCTGAAGCTCCACGAAGCCCCAAGCTCGGCAGAAGACACCTCCATAAGCACCACtgcacccccctctctctctcgcccagCACCTCTCTCCACTAACCTCTAGACCACTGTGCGCTCTAGCCCTCTAACCTCACGTCCAGCATGGAGAAAGTGCAGCACATGACTCGCTCGGCCATCAGGAGGGCGTCCACCATCGAGGTGAACCCACAGACCAAACAGAACCTCCAGGAGCTTTTTGTCAATTTCTGTCTCATCTTGATTTGCCTCCTGCTTATCTACATCATTGTGCTGCTGCTCTGAACCCCGCCTACATGTACATTAAAAGCcgacccccctcccccacctgcGGCTAAATGGGATGGCTCATTGGGGAGGTTGTGGGCTTACAGAACTGAGATTTACTGttcattattgtaaaaacacaccaaaaaaaacataaaagtgaactgggaaaggaaaaaaaaatatgattttctaaTTTGGGATGTAATTTGAGAGGTAACATGTATGaagcagttatttttaatttttttaattcactaaGATTCACTAAGTAAATTGCATAGTATGGATAATTCAAAGATTGTATCTGTGGGGGCTATAATACTTTCACACGAGAAATTATTTCCTCCCTCGGCTCAAATCCATTCCTTTAAAGACCACAGTTCACCACTGGCATAATTAAATCAGAGCAGCAGCCTGCCTTTCCAGACAAGTGCAGTACCTCCACTGAAGAGGCCCGGGACTGACAGAGAAGGCCTCGCCACAGCACACATGCCTGCTATTCACTCTTCATCCTGCTGCATGAAGCTCTTACGGTTTTCCAAAAGACTCTAGTTACTGCAAACATCACATGCAAACTCGCAGAATCCCGTACTCccttacattttctgttttgcctACATATGTGCTGTGCTCAAATAAACAgggtatgaaataaaatgtatgtgaacTACTCATGTGTTACATTTCATGTAAATTTCTCACATCTAGGAATGAAAGAActggataaaaaaatattattttatgaattttgtttctatgcattcattttccaattgatattatttttatggtttgAACATTTCTGCTgctaaatattttcaatatgcTCTCTTTAATGTGTGAAAGTTCCATAAATTAAGTTCTAAACttctaaaaaatatacttttcagtGATGTAGTACATGGATGATCAAATTAAAGTTTGAAATAAAACCTTACATAACTATTTTACCCCAGTCTCCTTTACcattcatttattatacatatGATCAAATTCTAGTGCAAAAACAGAGTGAGCATCGACTCAAATAGGGGCACGAttacatacaatataattgcattgtattatgtaaatttgaatttgtaatgtttgatgccttgtactgaactgtatttttgcactttgtattgcacttatattttataagttgccctggataagggcatctgccaataaataaataatcataataatagtatttttaacagtaggtaAGTGCATTATATAGTGATTAAAGCCCAATACTTAAAATCGGACATAACGCACTAAACATTATGAATGGTAAAATCGTCTACTTCTCAACAGTTACtaatttaaaaacttgaaaactcAGTATCTATAACTGCAATGACATTTCactcttgaaataaatattaaggaTAAtgtaaggtaaaaaaaaaacatactgggATCCCTTGCATCAGCACAGGTAAGTTGAACTATATTTATTGCATGCcactaaatacaattaataaataggcTGAAACTGAGAGTCCTTTTATTTACCCTTATTAAATACCGTATCCATTATTTTATCAGACAGCAGAGCCATATATGCAATCTGTGGTTTACTACGGATTACTACTGGTTATTAATGGCAATGCATAAACTGCGGATATGCTAATTTAACCTCAGAGATGGAGATTACAAATGTATCATATTTGGGCATTAACAGCATGAATctagaaattaaatatatagttatttatttttcccccaccaTTTTAATGTACTCCAACAGCAAgatcaattatacatttttgcctCTAAAATAACTGACATACTCAATTAATCTGATCCTATTTTACATCTTCACAATgaatagaaataaacaatgaaaactgTTAATATGATGAGGACCACAACAGGCCACAAGTATTCCTGCTCTGAGAAACACATCTGCTGTTTGTTAAATGGCctatatattaatgttatatatatgtaatgtaatatttatacacAATTTAAGCTAATTAGCAAAACTTCTGCTTACATTCCTGAGATAAGTAATCAATGCTGATGACTTAGGCTCCTCTGAGGCCCCTGATGCCAGGGCTGTACTAGCTGAGCAGGGTGACACTTTCTTTCCACTCTGATGTGCAGCTGAAGAGGCCAGAGCGAACCCGAGGCCGAGGAAGCAGCAGGATGGAGTAGCGGTCTTAAAGCTCATCCACTGTGCCAGGCCTGAGGCTGCCACCTCTGGGAGGAGACCCCCACAGCAGCCCTGCACAGAGCCACTGACAGCAGAACCCTGTTCACCATGGATTTGGCGAGCAACAGAGGCCTCAATCTGCTACTCAACTTCCTGCTGATTGTCCTCGTTCTCATACTGATGCTCATACTAGTGAAGCTCATGTGACAGCCCTGCCGCTGAGCAGAAATGACTTAGTGACAAGACCCCGGCGGACACGGTTTGTGCATGCTCACCCTGCAGAGACCCCACAAACTCCCCGCCTGCCACTTCAGcctagaaaaagaaaaaataccgCTTTACGTGTTTGTAGTGCCGAAGACAGTCgattcatacatttgtttaaaattaaaacacagctttacattttaggacagcccaAAAGGAGCAATAAAAGCAGGCAGGTTGGTTTTACTGGACAACTTAAAGCCCTTTCACAAAAAGATACTTCAAATTGAAAGCTAAATAAACCACCAATATAAgattttttattactattacttttaTATCAAGCACAAATTACTGGTTCTGGATTTGGCAAAAAATCGAGAAATGTATACCCCAAGAAGTTTCTGATcaagataaattaaatatacatcaacctgttttaattcagataggaaattgtatttgttttccagttaaGTCGTTTGCACACAGCTTATAGCAACCTTACAAGGatcataataaaattaaaccgAAGAAAAAACTGTCAGCTTTAGCAGCACTTTCAAATGAAGTCTAGAACAATCCCAGTCAATGCGAGAGTCTCCCTCTGGTGGCAAAACTTAATATCAGTAAGGAAGTTAGTATAATTGTTAGATGCAATGACATCTTCTAAGTTCGTTGATGAATGTGCTGATCTACAATCGCTGAGTTGTTGCAGTGACGATGACACTTGAGATCAGATGAAGATTCTTAGTTTAGGAAACACAGTTCTGTTACATGTGCCAACCTTTTTATATTAGTAAGATGACGTGGATATTTTAAATCATCTGGGCTCATCCCCGTGGCCAACTTGCCATTTTTCAAATACCATTTCCCCTACAGCTGTTAAGGATTCAGATCGTTTGTGTGtggctttattttttacattttctttgtttttaatttgtactgtGATGCCTTTTCTATATCAACCCTTACTACATACTGCTCCTGTTTCCAAGCCGTGCCCTGTTGTATCCAGGTGTGTTACAGCTGTGGAGTTCACCTCTTTATGTTTTAGGGAACGCCAGTACAGCAGCTCCGCCAACTGCAGCTTTAATATTCACAGACCCACTGATGTATGTTTTACACACATCTCTCTCCACTTGCAGACACAAACGGAACAAATATATCTCTGTGCAGGAAAATGTGTTACAGCTGTGGAGTTCACCTCTTTATGTTTTAGGGAACGCCAGTACAGCAGCTCCGCCAACTGCAGCTTTAATATTCACAGACCCACTGATGTATGTTTTACACACATCTCTCTCCACTTGCAGACACAAACGGAACAAATATATCTCTGTGCAGGAAAATTTGTATGCCTCTTTTGTTGCTGACAGATGTAGGCCTATGTTTTGTTCCTTAAGTAAACGCAGCAAAAATGATAGACAGCTGGGGGAGCAGCCCTTTGAGCCTCGCTCTGATGCTGCAGAATTGGGCTCTGTGTCCCCTGATGTCTTGACATGACTACATCACTGCCACAGCCTGGCGCCTCACAGGGCGGGGGCTAAAAAGCACCTCGAACTGTGTACATTAACTCTGCCCA

Function

GO: NA

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004336 False 336 mRNA 0.53 3 43424197 43450255
TU9174 False 2400 lncRNA 0.41 2 43419851 43428586
TU9175 True 4364 lncRNA 0.40 3 43402953 43428586

Neighbor

gene id symbol gene type direction distance location
AMCG00004325 NA coding downstream 367675 42975752 ~ 43035278 (-)
AMCG00004322 NA coding downstream 477154 42922676 ~ 42925799 (-)
AMCG00004324 NA coding downstream 482759 42914142 ~ 42920194 (-)
AMCG00004323 LOC107675226,LOC107602186,LOC105017938,LOC107716890,LOC107697125,LOC107598086 coding downstream 501070 42901035 ~ 42901883 (-)
AMCG00004319 hsf2 coding downstream 650136 42738503 ~ 42752817 (-)
AMCG00004333 NA coding upstream 16914 43467169 ~ 43485249 (-)
AMCG00004337 slc35f1,LOC107727669,LOC107678858,LOC107743307,LOC107697151 coding upstream 35014 43485269 ~ 43514436 (-)
AMCG00004334 slc35f1,LOC107697151,LOC107678858,LOC107743307,LOC107549682 coding upstream 69724 43519979 ~ 43539410 (-)
AMCG00004339 NA coding upstream 142898 43593153 ~ 43604125 (-)
AMCG00004341 NA coding upstream 155614 43605869 ~ 43608735 (-)
G7419 NA non-coding downstream 165343 43235818 ~ 43237610 (-)
G7336 NA non-coding downstream 665103 42725912 ~ 42737850 (-)
G7335 NA non-coding downstream 683262 42692754 ~ 42719691 (-)
G7270 NA non-coding downstream 1089835 42312919 ~ 42313118 (-)
G7268 NA non-coding downstream 1137976 42264690 ~ 42264977 (-)
G7554 NA non-coding upstream 418208 43868463 ~ 43868706 (-)
G7580 NA non-coding upstream 632842 44083097 ~ 44089780 (-)
G7583 NA non-coding upstream 727391 44177646 ~ 44177988 (-)
G7585 NA non-coding upstream 886016 44336271 ~ 44336570 (-)
G7587 NA non-coding upstream 958105 44408360 ~ 44408665 (-)
AMCG00004313 NA other downstream 871947 42376726 ~ 42531006 (-)
AMCG00004302 NA other downstream 1335289 42064989 ~ 42067664 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other downstream 3553830 39841935 ~ 39849123 (-)
AMCG00004203 NA other downstream 6021000 37324010 ~ 37381953 (-)
G6441 NA other downstream 6034131 37367985 ~ 37368822 (-)
G7608 NA other upstream 1070659 44520914 ~ 44522213 (-)
AMCG00004364 NA other upstream 1089908 44540163 ~ 44561575 (-)
AMCG00004372 LOC108423781,LOC105921217 other upstream 1172935 44623190 ~ 44712051 (-)
G7868 NA other upstream 2856671 46306926 ~ 46307319 (-)
G7882 LOC107575789 other upstream 3017870 46468125 ~ 46468434 (-)

Expression


Co-expression Network