AMCG00004338 (LOC106571388,LOC106607787)


Basic Information

Item Value
gene id AMCG00004338
gene name LOC106571388,LOC106607787
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 43625615 ~ 43631896 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004338
tttttttctctctctctctccttacaGGAAAAAGAGCTGGAGGCGAACAAGAAGGAGAAGGTGAAAGAGGTGAAGCTGGAGGCGGAGGTGAAGCTGCTGAAGAAAGAGAACGAGGCTCTGCGCAGGCACATCGCCGTGCTGCAGGCCGAGGTGTACGGGGCTCGGCTGGCGGCCAAATACCTGGACAAAGAGCTGGCTGGGAGGGTGCAGCAAATACAGCTGCTCGGCCGGGATATGAAGGGCCCAGCGCACGACAAGCTGTGGAATCAGCTAGAGGCAGAGATTCATCTTCACCGGCACAAGACGGTCATCCGAGCCTGTCGGGGCCGCAATGACCCCAAGAAGCCCATGGCCTCTCCAGTAGGACATGACACGGATGCATTGAAGAAGACTCAGGGCGTCGGGCCGATCCGTAAAGTTCTGCTGTCTAAAGAAGATCACGAAGGGCTTGGCATTTCCATCACAGGAGGCAAAGAGCACGGCGTTCCCATCCTAATATCGGAGATCCACCCCACCCAGCCCGCGGAGCGCTGTGGGGGCCTGCATGTGGGCGACGCCATCCTCGCTGTAAACGGCATTAATCTGAGGGACGCCAAGCACAAAGAAGCTGTCACCATTCTGTCTCAGCAGAGGGGCGAGATTGAGTTCGAGGTTGTGTACGTTGCTCCGGAGGTGGACTCGGATGATGAGAACGTGGAATACGAGGATGACAGCGGACATCGCTACCGCTTGTACCTCGACGAGCTGGAGGAAGGCTCGGCGACAAACCGCAAAAACAGCTCTGCAGACACTGCGTCGTTGCAAGCCCTGGAGAAGAACTCTGTGAGCGACGGCGTGGAGAACGGAGACACGGGACTCTCAAGCGAAACGCCGTCAGAGGAGATGACCCCCAAGCCGGCAGATTCTGCCAAGAGCTCGTCATAGGCAAGCTATtgagaggagagaagggagggaaggactttgtatatgttttaaataacagaGTTTTGTACTTTATGAGAATGGACGGCACTGGAGTCAACGGGAGAATGCATGAACGTGAGGCAAGATGAATGCTGTTGCTCTGGTACCACTTCAATGCAGAGTTAATGTTACTGTCTCTGTTTCGCAGTAATAAGCCATACAGACAACATAACAAAAGCTGTCATATTACTGAAGCTCTGAAAAGCAGGACATGGAAGGATATTGTAGTCTGATGGACAGTCTTAGATGTAGTGTGTGATAGGCCCTGAATGGTATTAACTTCCCCGCCCCTTCATTGTTTCTCGTGTCGCCCATGTCTGCTGTTACTGACCCGCTGGGGCCTGTTGCAGAGGCCTGATCCAGTAGGTTATTGTACAGGAAAGAATAATTGAAGTTGATTTAATTCCCTTTGTACATATTATACAAACTTTTAAAGTATTGATCTGTGCACTTCTCTGACACAGCTAGATTTGGAGATAATAAGTACCGTCTCCTGTCTATTTGAAGTTTCAGAACAACGTTACCTGTTGTATTTGGACTGCATTTATTTCCTTCTGTTGCATTCTGCTAACGGCATACAAAAATGTGACCTGAAGGTGTGGCAGCAAAGAATGGTTTCCAGTCACCACAATGATGTGTGTCCTGGGGGTTTCAAAGCAGGCCacgttttcagtgtttttctatCTTATGTATTCTTATGCTTCTTATTCGAGTATGTTAAGGAAAGGATTTTGACAAAGGATTTTAGTAGATACATAGATTTCTCTAATCTTTATACAAGTCTTGAAGCAGTGTTTCAGAGAATGGAAGCATACATAACCGATATATATTCCCCGGCACACATTAGTGTGTGAGGCTTAGGTATGCAGTGTCAGCCTGGTGCAAATGAATCGCAGAGTAAGTTAAGTTTCAGAACATATTCCCACGTGGTGCCTTAGGCTCAGTGCAGCTGGGCGATggattgcaaaaacaaaaatcaaatgagCAAAAAACCTGATGAAGACAAATCTACCCTTAATTCAATAATAGTGATATAGTTGGGAGGTAATACAGTGAGCACTAGCAGGTTCTGTACATGCTGTCAGAAGTGAGTGCATCCTACAGACTCCCTACTCACTGCCTGTAAGGCTGCCAGAGACTCTCAATTACTACGAATTTgatatgcaatttttttttcttttactttattattttactgacaGACTTCTGTGCCATGGATACTGCTATAGTCATACCTTTTTTCTCTGCtatggaatacaaaaaaaacgtAATGGTGCAACTACATTTAGTCAGTCATCTTGTTTCTACCACCCCACAGTGCTAGCAAGATATTACTGTGCAGTAGCTGCTATGCTGCTGAAAACCTGTATCTATCGTAAGAAATAGAACAGTATGGTGTTGAATACCCAGATGGAAATCTGCTTTAAGACCAAGAAAGCACACTCTCCCTCATTATTTGCATCGCTGTATCGTATAATGTGAAAAAgtgcagtgtatttattaattttgttagtACAGTTCTACATATGAAGGGGCATCTTCTAGTCACTGTCATTTTTTGTCTTTATGCGGAGTGAAGTGTCATCATAACTGTTCTTCCACTACCcttgatatttaatattaagtGCCCTCTCCCACCTACAGCCAGTGCAGTGATTTGACACCCCGTTCACTGTGGTCTTTTTCTCGCCCAGTGCTGTCTTTTAGGGAAAGGAGTTTAAAAAATCCCCCATCCAAAGACATGTACACATCCAGTAAAAAGCCTGGATATGCTAATCTGTTTCAGGGCTACACGGTTGAAGCCTAGGGACGAAGGAagactgtaaaacatttaatttcttataatgtataatgaGCTTTAACAGCCACAATGCAGCACATGAcgtataattgtattattttaaaacgaGAAGTAAACATAGGCATTTTAGTTAAAAGCAATAAACTGATGTATTACTACTACAGCACAATGTAACACAGTTATACTGGGCCATTTCAGAGCCTGTAATGAATctcttatttatgtataaatatatttgttgttttgaggTTACTGATTACTGTACTTCTGTGGGTTCATAACCCTCTCTTGGTATTGAGGTCTATATCCAgtattgtcatttatttctatacgtcaatggttttgtttgttttagtagtTTGATATCAAGGTGGAAATGGCAGATAGCGCCCACAGAAAGAGAAACCGATGTGTACACAGTTATCTCCATTATCTTCTCTGTTCTGTACTTGAACTTAGTCAGGTTTATAAAATAGctgaaatttaaaaacacactgactaTCACAGCATTTTAGGGCTTTTTCTGTATCGGTATCTTGCTTGTGGAACGACAGGCTTTTACATGAGAGACTTTGCCACTGCATGctgttcatatattttgtactgtttaCCAGCTGAAGTGTTTTTGCTTTATAGAACcaaatctgttttaaatgtattgatttttttttagcaaaacaCTTTTCCCTAATTCAtcactggattttttttttcttaaaaaaagagagaaatgtgaTATTATTTGGTCTCATGAAGTtgtttttaacttgtattttctgttctaatatatatttcagtaataCACATACCATATATGcgatgtttaaataaaatttaaatgtatttcagtttcttAAACCCCCCTTTCAGTTTGTACCTTAGTATCGTTTCGGCCTTAACAGTGTTGTAATTGTTGCCAAAGCCAGTGCGAAGTGAACTTTGACATTCTTCAAAGTTCAATGGCGTCTCCTCTGGGTCCCATTGGAGACGCTAGTGATTGTTGAGAGGGTATAAAAATAGTGCTGTCGATACTGTCCCATCACACATACTGCTTTTCATACCATGTGTTCATTTAAATGCTAACGCAGATGTAGAATACAAGTTGAAGTTGTATGTGCTGTACAAATGACAGTGCTCCAATGAAAACGCAAGAAATTTGGAAAGGTATTATTTTATCCCTCTGTCCGTCCCTTGTCATTATAATGTGTGCACTGTGCAGGTACAAGACACTGCAGGCCTCACCATCTGAAGGATTTTCCTGTAGTTTCCGGTTACACATTGCCACCAGCGTGTTATTGGAAGGTGGTTTACAGAAATGCATCTCGCTGGTCTCTTAATCAGTACCTATTCAGAACACTGCCCATTATAGACTTGGATTCAAACGTATTGCTCACTTGGGTGCTTTGAATGAATCATTGCTATTACAGCAACGATTTTCTCAGCTGCCAATGCGGATGTGTTGGGTAAGACATCTTTCTGTTTTACCTTCACTTTCgtctttattttcacacaatCTGCCGAGATTGAAATCCAGTCCTCAAGTGTTATGGCTTCaaaattattctgttttctgaTGCATTTGATTGCCATATTCAGGAGAACTTCCATTTTCAGACTTGGTTTTTGTAAACGCCCGGCCTGAAAATGTCAGTTCCTGTTTCTTGATACCTGCAGTATCTGTGaaatagtttatataaaacaacagATCCTGGACTAAATATAGTATCTTATTccacttaatttgaattttcTACCTGGTACCTGGTTTCCCCATTAACATTCAGGTTTTCACTATATTcttgtttttagaaaacaaaaaattacactcggctggtttcacagaccttgattcggacctgtgaaataaaaccttttaaGTTCAAAAGAGCCAAAGagacattgtttatttgtaatgctGACAGTTTAATTATTCTGTCTACTTTGTAAGCACCATGAACTCTAG

Function

NR:

description
PREDICTED: Golgi-associated PDZ and coiled-coil motif-containing protein-like isoform X2

GO: NA

KEGG:

id description
K24054 GOPC; golgi-associated PDZ and coiled-coil motif-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004338 True 4727 mRNA 0.42 6 43625615 43631896

Neighbor

gene id symbol gene type direction distance location
AMCG00004342 gopc,LOC106607787,LOC107603060,LOC107678854 coding upstream 14520 43610781 ~ 43611095 (+)
AMCG00004335 NA coding upstream 90957 43526980 ~ 43534658 (+)
AMCG00004332 NA coding upstream 214519 43380670 ~ 43411096 (+)
AMCG00004329 LOC107549683 coding upstream 262928 43350779 ~ 43362687 (+)
AMCG00004330 fam184a,LOC106607780,LOC106571378 coding upstream 286755 43329372 ~ 43338860 (+)
AMCG00004343 NA coding downstream 39124 43671020 ~ 43721979 (+)
AMCG00004346 NA coding downstream 163325 43795221 ~ 43798475 (+)
AMCG00004351 NA coding downstream 778703 44410599 ~ 44411051 (+)
AMCG00004354 NA coding downstream 866532 44498428 ~ 44498907 (+)
AMCG00004353 NA coding downstream 879951 44511847 ~ 44512326 (+)
G7485 NA non-coding upstream 30537 43591750 ~ 43595078 (+)
G7441 NA non-coding upstream 278656 43346350 ~ 43346959 (+)
G7418 NA non-coding upstream 387962 43235818 ~ 43237653 (+)
G7293 NA non-coding upstream 1149729 42475576 ~ 42475886 (+)
G7288 NA non-coding upstream 1245654 42376625 ~ 42379961 (+)
G7569 pvrl1b,nectin1,LOC107563312,LOC107758086,LOC107691861,LOC107670612,LOC107561861 non-coding downstream 446449 44078345 ~ 44088037 (+)
G7584 NA non-coding downstream 704555 44336451 ~ 44336681 (+)
G7614 NA non-coding downstream 898444 44530340 ~ 44543143 (+)
G7638 NA non-coding downstream 942435 44574331 ~ 44574997 (+)
G7644 NA non-coding downstream 955810 44587706 ~ 44587984 (+)
G7329 fabp7,LOC108247051,LOC104945778 other upstream 934506 42688779 ~ 42691109 (+)
AMCG00004304 NA other upstream 1409253 42210430 ~ 42216362 (+)
G7094 NA other upstream 2118384 41459576 ~ 41507231 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 3284380 40326410 ~ 40341235 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 5777895 37832623 ~ 37847720 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 986289 44618185 ~ 44640732 (+)
AMCG00004380 NA other downstream 2330114 45962010 ~ 45968306 (+)
G7999 NA other downstream 4514992 48146888 ~ 48147156 (+)
AMCG00004421 NA other downstream 5265221 48897117 ~ 49026355 (+)
G8099 NA other downstream 5300554 48932450 ~ 48934095 (+)

Expression


Co-expression Network