AMCG00004339


Basic Information

Item Value
gene id AMCG00004339
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 43593153 ~ 43604125 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004339
GGCGCAGGGGCCTATCGCCGAGCTCCATGTAATACTGCGAGTTCAAAGAGGAAAGGTCAAAGTTTGAAAGATGGCGGCCGGCGCACTGAGGTGTTGGCAGTGAAGTAGCTGGCTTCCCCCGACCAGATAGATGTGCGTCTGTCGCTTTAAGGACTGAAATGCCGCACAGTGTGAATTCTTGAGAAAGAACAAGGTCCGTAGAAACGCGTGTGGGACTCTGTGCGATGGCGGTAGTGTACGAGTTTGTGTGGCGGCTCCTGCATGCTGTCCTCCACCTCCAGCGGACGCTCCTGACTTGGTTCCGAGTTCGGATATGGAACTGGAACTGGCGGCTGTGGAAGCGAGCCGTGGCGGCGGTGCTGGTGCCGGTCACGTTTGGGTTCCACAACCACATCCACAACAACAAGAAGCTGGTTCCGGCAGCCGGGAAGAGGAGCTGCAGGCGGGTCCGCTGGAGAGCCGACGGGACGTCTCTGGAGAAGCTCCCGATGCACGTCGGCTTGTTGATCGCAGAAGAGGAGCCGTGTTACACAGACATTGCCAACTTGGTGGTTTGGTGCATGGCAGTAGGGATCTCTTATGTCAGTGTCTACGATAATCATGgtATCTTCAGGAGAAATAATTCCAGACTCATGGATGAAATCCTAAAGCAACAACAAGACCTACTTGGTCTGGACAGTTCAAAGTACTCCGTTGAATTTTTAAACTATATTCTGTCGTGTCAAGCTGCTGTGAAGGTGCTCTCCCCAGAGGACGGGAAGCCCAGTATAGTGAGAGCAGCGCAGAAGCTGTGCCAGTTGGTGGagcagaaggagaggagagcCTCAGATATAGATGTAAATATGGTGGACTCTCTCCTCAGAGGTACGAAAAATCTGCCAGATCCCGACTTAGTGCTAAAGTTTGGCCCCGTGGACAGCACGCTAGGATTTCTCCCCTGGCAAATCAGACTAACAGAGTTTATTTCTTTGCCTTCCCACATAGACGTCACATACGAGGACTTTTTCTTTGCGCTGAAGCGATATGCTGCCTGTGAGCAACGTCAAGGGAAGTGACCACTGGGGTGTACTGGGCACCAGGAtgcagtaaaaacacaaaaaaggggaCTTGCTGTCTCTTCAAGTTTACAAGCACCCAAGAACAAATACATGCCTCGCTCAGCGTTTTCATTCATAATTTGAGTTTCTCAAGGAAAGGCTAATAAAGTGTCTTATTACCTCTCTGTGGATAAATGGGCGTGTCTGTAGCAGTCTGGAGTtagtttaaaagcaaaacttgttttatttggggAATGACAAACATTCTGTTGGGCATGCCTCATTTTATAAAGACATCTCGTTCTTAACTGCCCATCAAGCAGTGTGGTGCATCTGCTTTGTTCATCTGCttggttttttttaattggaatggacctacatttaaaaccaaccaacattttatttacatttttggtcTGAAATGGTATATTGTAGAGCGTTTAACTttgtataatgcattttttttttttttaatcaaacatgGTAACTGGATTCTCAGTGGAGCTGTTAGTAGTAGGAATATGTGAGACACAGAAGGTACACAAATGTACCAGTTAAAGGGGTACTATGATGCAAGCTCCCAACAGTACCtctgtgaaattattttgtatgcaaaACATGTTAGAGCACATGGCAGAATTGTCATTCTGTGGAGAGACTCAAGTGCAGCAATGTTTAGCCCTGTTAGCAGAGTGAACGTGTAGTTATTGAAGGATTTCCTGGGGCTTCAGAAGACTGATTTCAATTACAGTAcataatttgatttgaaaaaatgCCGTCTTTGAGAGTCAAAGTGAAGAGAATCCCTTCAGAAGGGCCATTACATGactatttaatcaaattaaaacaacttatttattagtttttcccATTTTGTGACTGGTGGACATGGACTGCAGATCTGCGAGTCATACTGTCCTCTGGTAGGGAATAATTCTCCACATGAGTCagatactttttattttatgctggTAAATAATAAGACCTAATAATGCAGTCTTACTGTCCCAAAGATGTGGAATTCTAGAtgcttttagttttaaaatgttttgcactaAAGGCTCATCACAGTGCAGACATGCAACTCAGTGTGGTAACTCAGCTCTAACACATAGAAACACACAAAGCgtaaaatagtaaaatgtttAGATGCATCAAATCGCTTAGGCTAAATGCCTTTACAAATCCTCTATCCCACCTTTGTTgaagtttttctttcaaaaatgaaCACTGAATCTTCCAGTTCCTGTAGCATTATGATGTAGTCGTACTGTCCCTGCGAGATCATcagaactacattttttttttacagtaaccTTCAACCCCTTAAGGAATATATGGCACACCTAGGGTCTCACTTTCATTGCAGGTTCCAAATCAAgataaaaacatcttcaataACAGCTTTACCACTAAGCCATTGTTGCAGAGAGATGCTATACTCCCTTCAGGTTACCTAAATGAATGGGACAGCCTGTAAAAAGGAAGGTGGAACCATAGATGacacatctttcttttttgtgtacTCTAGCTCATGTAAAACTCTTTGCTTTGTACAGAAAGACCAATCCGTCCATTTCCTCCATATTATTTTATCCTGACATGTTAAGTGAAAAtgcaaccattaaaaaaaatcaagaccATGCACAATTAACAATAGTCAGTAAAACAGTTGTTCAAAGCACTGAAATTCAGCAGTCTGAAAATGATAATTCATGTATGCAGTGGgtgtcaaattataatttagctTTGTATTTGAAATCTGAGCACTGTACTTTTAATAGGTCACATTTGAAAAGCTTCAAATAatatggactttttttttttttttttttttttttttttttttttttt

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0044425 obsolete membrane part cellular_component
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups molecular_function

KEGG:

id description
K19177 NUS1; dehydrodolichyl diphosphate syntase complex subunit NUS1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004339 True 2891 mRNA 0.42 5 43593153 43604125

Neighbor

gene id symbol gene type direction distance location
AMCG00004334 slc35f1,LOC107697151,LOC107678858,LOC107743307,LOC107549682 coding downstream 53743 43519979 ~ 43539410 (-)
AMCG00004337 slc35f1,LOC107727669,LOC107678858,LOC107743307,LOC107697151 coding downstream 78717 43485269 ~ 43514436 (-)
AMCG00004333 NA coding downstream 107904 43467169 ~ 43485249 (-)
AMCG00004325 NA coding downstream 557875 42975752 ~ 43035278 (-)
AMCG00004322 NA coding downstream 667354 42922676 ~ 42925799 (-)
AMCG00004341 NA coding upstream 1744 43605869 ~ 43608735 (-)
AMCG00004340 NA coding upstream 31022 43635147 ~ 43671248 (-)
AMCG00004344 NA coding upstream 121547 43725672 ~ 43734731 (-)
AMCG00004345 NA coding upstream 174024 43778149 ~ 43789688 (-)
AMCG00004347 NA coding upstream 394792 43998917 ~ 44002983 (-)
G7419 NA non-coding downstream 355543 43235818 ~ 43237610 (-)
G7336 NA non-coding downstream 855303 42725912 ~ 42737850 (-)
G7335 NA non-coding downstream 873462 42692754 ~ 42719691 (-)
G7270 NA non-coding downstream 1280035 42312919 ~ 42313118 (-)
G7268 NA non-coding downstream 1328176 42264690 ~ 42264977 (-)
G7554 NA non-coding upstream 264338 43868463 ~ 43868706 (-)
G7580 NA non-coding upstream 478972 44083097 ~ 44089780 (-)
G7583 NA non-coding upstream 573521 44177646 ~ 44177988 (-)
G7585 NA non-coding upstream 732146 44336271 ~ 44336570 (-)
G7587 NA non-coding upstream 804235 44408360 ~ 44408665 (-)
AMCG00004336 NA other downstream 142898 43402953 ~ 43450255 (-)
AMCG00004313 NA other downstream 1062147 42376726 ~ 42531006 (-)
AMCG00004302 NA other downstream 1525489 42064989 ~ 42067664 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other downstream 3744030 39841935 ~ 39849123 (-)
G6441 NA other downstream 6224331 37367985 ~ 37368822 (-)
G7608 NA other upstream 916789 44520914 ~ 44522213 (-)
AMCG00004364 NA other upstream 936038 44540163 ~ 44561575 (-)
AMCG00004372 LOC108423781,LOC105921217 other upstream 1019065 44623190 ~ 44712051 (-)
G7868 NA other upstream 2702801 46306926 ~ 46307319 (-)
G7882 LOC107575789 other upstream 2864000 46468125 ~ 46468434 (-)

Expression


Co-expression Network