AMCG00004340


Basic Information

Item Value
gene id AMCG00004340
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 43635147 ~ 43671248 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004340
aattaattttacatatttgttaagATATTACCAATTCGGCGACATAGTGTTATGGtttttttatatgttgtttgttttattttgaattaaaaatatagtgtGGTGGTCAGTTGACTTGCCTGCAGTGGTCGATGTCTTTGTGGGGGCAGTCGCCCTGCTGTGCAGCCCCTCGGGTCGGACGGGTCGAGCGGCCGCTGGGTGCCGCCCGCGCAAACCCGGAAGAGTGCATTGGGACGGAGTCTGTAGTTGTAGTTGGACTCAGAGGACTGCAGTGTTGCAAGCCCCCAAACACAGAGTAACGTAAGACATATTTCCCCCGAAATGTCTACCTAGAGGCTGACCCTGGCGCAAATAAAGGTTAATAATCGTGTCCCAGTAGGAGAAGATGCCGGGCAACGACCATCTTTATGGGATATTGTTTCTTCTCCTCTCGGGACTTTATGCGCCCATGTTCGGTGAAAAACTCGGTGATGGTTGTGGCTACTCCTTTCTTGGTCCAGAAAGCGGCATTTTAACTTCGAAGAACTACCCAGGGACCTATCCCAACCATACCTGGTGTGAGTGGAGGTTCCGGGTGCTGGACGGCAAGAGCATCATCCTGAAGTTCGGTGACATGGATATTGAGGCACAACATTGTGAATCTGACTTTGTTAAAATCTTTAAAGGCACAAAGGCATATGGAAATGATCACGTTTATGGGACCTTCTGTGGCACCCTGGATGCTCACCCTAGAGAGATCCACGTCGACTCCAGCGAGATCACAGTTCAGTTCCAAAGTGGTCACCACATCTCAGGTCGTGGTTTCCTGCTCTCCTACGCAAGTAGAAACCATGAAGACCTCCTAACATGCTTGGATAGAGCAAGTCATTTTTTGCCTTCAAAGTACAGgaAATACTGTCCGGCAGGGTGCAAGACAATTGCAGGTGAAATTTCTGGGGACATTTCACAGGGATACAGACATacGTCTGTCCTGTGCAAAGCAGCTGTCCATGCTGGAGTTATCCTGGACGAGATAGGAGGCCAGATATCAGTTGAGCAGCATAGAGGCCTGAGTCATTATGAAGGAATCAAGGCCAATGGGATCCAGTCGAAGGATGGTTCTTTATCTGATACACGCTTCATGTTCATCACAAATGACTGCAAGAAGCACTTGAGCTTGACACCAGTGTCCATCACAGCCAGCTCTTCCTGGCAGAGGAGCAGTGAGTTGGGACAGCTCAGTGACTGGTCTCCAAACAACACCCAGTTTGATGTGAGGGGCCGCGCCTGGGCCGCTGACCACAATAACAGTCGGCAGTTCCTGTTTATCGACCttggggagagaaagaaaattacagGAATTATAACTACAGGATCCACTCTGTCACACTTTGACTTTTATGTTAAGAGTTACAAAATTGAGTACAGAGAGAAGAACAAATGGAGGActtacacacaaaacagcagtgCAGAGGACATGATATTTGAAGGAAACCTGGACTACCTGCACCAGTCACGCAATAGCTTTCTGCCGCCCATAGTGGCGCGGCAAATCCGCATCATTCCCCAGAGCTGGCACCAGAGAATAGCCATGAAGATGGAATTGCTCGGCTGTCCGCAAGTTAAAGCCATTACCTTGCAGCCCACACAGGGAAACATCAAGCCTAACACAAAATCTCCAGGAGAAGATGAGAATGCAGGGCCCATCCCCACACAGGCTGACCTAGtgAAACTGCTCCTAATTGTTGTGCCTGCCATTGGTCTATTGGTATTGCTGCTTGTTGGAATTTGTGTTTACCGGGCACTACAGAAAAAGAAGACAAAGGAAACTGCATATGGTTCATCTGATGCTCAGAAAACAGGTTGCTGGAAACAGATCAAACAGCCCTTTGCCAGGCACCAGTCTGCAGAGTTCACTATCAGCTACAGCTCTGACAAAGACACCCTGCAGAAGCTGGACTTGGTGACGTGTAGCATGGCAGATTACCAGCAGCCCCTTATGATTGGAACCGGGACCGTTACCAGGAAAGGATCCACGTTCAAGCCCATGGACACAGACACCCAGGAGGAGCAGCTTGACACTGGGACACACTATGATTACTTGCACACAGCTAATCAGTATGCACTGCCTTTGACCAATCAGGAACCGGAATATGCCACACCTATAATAGAGAGACACAACTTTAGAAAAGATGTCTTTCTCCATGAGGTGGGCTACAATGTGCCAGCAGTGGCTTTGAACAAGACCCCTTCTTTCAAGAGCAATGAATGCAGTAGCTACAGAAAAGACATAGGGCTCACAGGAGGGTACCAGACGCCCCACGTGAGGGCAGAGTCACTGCAGACTGGAGAAGGAGGGTATGACAGGCCAAAGCTGAATATTGCTGCTACAGACTATCATAAACCACAAGCCACACCTCCAGTGACTGAAAGCTACTCAATACCAAGAGACTGCTTAAAACTGACAGATTCTCTGCAGCCCTGAGAAGGAGGCACCTGACTTGAGTTAGTGGTGCAACATTAGAGTGCCAagattgtgatttatttatttttttcaactgAACCCACTGAACGGTTGCTGAAACTATGATAAATTATTgattccttttgtgtttttttgagTTGATAGAAATGCAGCAGGCATTGGGTATATCTGCTGTGTGACATGTGATCGCCTTGGGACAGGCGTGATCTGAAAAATCCCCACACTGGAAGCAGTAACTGCAATTATTGTCTCATAAGCTGCATgctttatatttctttgttttcatgtgaCAGTTTGGTCAAGCTCCTTGAATGTCAATGTGAAAACGTTATTGCTGTCTACCAGGTAtgaatagggttggaaattagTCATTAAGAGGTGTTCCTTACTGTGTTTTGAACCAGCCAATCTGGATTGCCATAACTTTATTGTGGatattttttaaggatttatttattttcaatttagcCTGTTTATTTACAGCTCTGTCAGCTTCCCCAAGGACATAGATGTGTTTGTGGATTCCCCTACATCAAAAAAAGTGCGTCACAATGTAGATTCCAATTCAATTCTAAACTCCCCAGGATTAGTCAGTGCCTTGTTTACAGGATAGGTGAGAGTGGATTATGTGttcattaaatgtgtttcttctaTGACTAGCACATAAATGTAAAGATATCCTACGTcacatacatttgaatattataGTCAAAGGCCATATGATGATCTTTAGTGTAGCATTTGACATGATTAGGACAGTAAAagtattgagagagagaaaagatgcAACAGCAAGAGGAGTGACCTTTACTATATGATGGGAATTTACAGTGATGGATCTCCTCTGAGTCATCAAGCAAAAAATGAATCTAACAGAACCTACActtaataggaaaaaaaaaaaagtcctgcaAGGAGGGGGTTTCCCTAGCAGTCAAACAATATGGGGATTTACTCAAATATCTGAGGAAACCAAGCTCTTCAGAAGCTATAATATGGGTTTTGTCATTAGAAATATGGGGCATCTTGTATTGGATCCAAGGATACTGAACTGAAGTCCATTTAATCTTTATTTGCTTACCAGTTACAATCGCTGCAATGCAGAGGTTGTGACCAGTCCAGTACTTGGGTCTGGTGAGTTTTCAGTAACATTGAAATCGCCTGGGTAAAGTGACAGCTAACTGGCCTATAAATACACCATAAAGCTGTTGCTAGATTTATTGGTTCACTAGAACCTGCAGAGAATGTTCACAATCTTTgtgatttgttctttttaaatgatgtgtAGCCAAATAATAACCATattaaaatggtacagattaaACACAGGTTACTATAAACTATATaggttacatttttaacaggactgtttttaaaaatgttttgtatatattactATTGTGCATTGTCCTAAGCAGTTTTATGTGCTAAACAGACGTGCTATGTTTTGGTGCTGCTGCGCTGCACAAACAGCCATTGTGGGTGTACTAATCACTTCTATAAtttctgtgaaatgtgtgtgtgggggggggcggcggcGGCGCTGGGtgtctgtatgttttgtttgcatgAGCAAATCTTGTGCAGCCTGATTGTAACCGCTTTGGGGTTCGTCGCGGATATGTTTACATTCATCTCTGGAAGCTGTAATGTGCCCGGGTTTTCAATAAACACAATGGCAGTTGA

Function

GO: NA

KEGG:

id description
K24794 DCBLD; discoidin, CUB and LCCL domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004340 True 4150 mRNA 0.44 15 43635147 43671248

Neighbor

gene id symbol gene type direction distance location
AMCG00004341 NA coding downstream 26412 43605869 ~ 43608735 (-)
AMCG00004339 NA coding downstream 31022 43593153 ~ 43604125 (-)
AMCG00004334 slc35f1,LOC107697151,LOC107678858,LOC107743307,LOC107549682 coding downstream 95737 43519979 ~ 43539410 (-)
AMCG00004337 slc35f1,LOC107727669,LOC107678858,LOC107743307,LOC107697151 coding downstream 120711 43485269 ~ 43514436 (-)
AMCG00004333 NA coding downstream 149898 43467169 ~ 43485249 (-)
AMCG00004344 NA coding upstream 54424 43725672 ~ 43734731 (-)
AMCG00004345 NA coding upstream 106901 43778149 ~ 43789688 (-)
AMCG00004347 NA coding upstream 327669 43998917 ~ 44002983 (-)
AMCG00004348 nectin1,LOC102782356 coding upstream 343871 44015119 ~ 44047238 (-)
AMCG00004350 pvrl1b,LOC107563312,LOC107691861,LOC107758086,LOC107670612,LOC107561861,LOC106581605 coding upstream 416128 44087376 ~ 44091833 (-)
G7419 NA non-coding downstream 397537 43235818 ~ 43237610 (-)
G7336 NA non-coding downstream 897297 42725912 ~ 42737850 (-)
G7335 NA non-coding downstream 915456 42692754 ~ 42719691 (-)
G7270 NA non-coding downstream 1322029 42312919 ~ 42313118 (-)
G7268 NA non-coding downstream 1370170 42264690 ~ 42264977 (-)
G7554 NA non-coding upstream 197215 43868463 ~ 43868706 (-)
G7580 NA non-coding upstream 411849 44083097 ~ 44089780 (-)
G7583 NA non-coding upstream 506398 44177646 ~ 44177988 (-)
G7585 NA non-coding upstream 665023 44336271 ~ 44336570 (-)
G7587 NA non-coding upstream 737112 44408360 ~ 44408665 (-)
AMCG00004336 NA other downstream 184892 43402953 ~ 43450255 (-)
AMCG00004313 NA other downstream 1104141 42376726 ~ 42531006 (-)
AMCG00004302 NA other downstream 1567483 42064989 ~ 42067664 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other downstream 3786024 39841935 ~ 39849123 (-)
G6441 NA other downstream 6266325 37367985 ~ 37368822 (-)
G7608 NA other upstream 849666 44520914 ~ 44522213 (-)
AMCG00004364 NA other upstream 868915 44540163 ~ 44561575 (-)
AMCG00004372 LOC108423781,LOC105921217 other upstream 951942 44623190 ~ 44712051 (-)
G7868 NA other upstream 2635678 46306926 ~ 46307319 (-)
G7882 LOC107575789 other upstream 2796877 46468125 ~ 46468434 (-)

Expression


Co-expression Network