AMCG00004344


Basic Information

Item Value
gene id AMCG00004344
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 43725672 ~ 43734731 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004344
CGCTTCTACACCTCTGTTGCGTTGGGAGGGTCACTATACTGGCAGCCTGAAGAGCTCTGAGGAAacaattcactttttaaatatcagaTATTTTTCCACTCCGTTTTCAGGGAATTACCACTCTGTCGTCTCCAATGAATCGTCACTTCACCCTGTTCAATAATAGTCCGTGAAGTAAAGCGGTCTCCAGCCATGAGCTGCTTGGATGTTATGTACCAAGTGTATGGTCCACAGCCGTATTTCGCTGCAGCCTACAGCCCCTATCACCATCAGAAACTAGCTTTTTACTCTAAAATGCAAGAAGCACCAGACAGTGGCAGCAGTTCCTTCTCCAGCCATTGTGGTCCAGCGATAAAGGAAGAGGACAAGGAGCGCCCACCCGAGGCCGAGTACCTCAGCTCCAGATGTGGGATCCGGGACAAGGAGCCCGAGGCCGAGTACCTCAGCTCCAGATGTGTGATCCGGGAGAAGGAGCGTCCGCCCGAGGCCGAGTACCTCAGCTCCAGATGTGTCCTCTTCACCTACTTCCAGGGGGACATCAGCTCCGTGGTGGACGAGCACTTCAGCCGCGCTCTCAGCCAGCCGAGCAGTTTCGTTCCCAGTCCTCCCAGTAATGGATCATTCCCAATGAGCCAGAGGAGTTTCCCTCCATCCTTTTGGAACAGCACCTATCAGCCTTCGGTCACGGCCTCTCTCAGTAGCAGCCTAAGCAGTGCCCTGGGTGGTCCACACACTGAAATTCCCTTTCCAACAGACCCTTACTCCACAGCCTCTATACACAGCCACTTGCACCAGGGTCCCCCCGAACCGTGGCACCACacccaccaccatcaccaccccTACTCCCTCAGTGGAGCCATCAGCACTCAGAGCTCGGCGTACCCCAGGCCCACCATGCACGATGTCTACGGCACACACTTCGACCCCCGCTACAGCTCTCTGTTAGTACCGTCAGTACGACCACACCGGCTTACTCCTGCCACCGTGCCCACGCCGGGAACCCCGCAATGTGACATTGGCAAGAGTGAACCCGCTTCCTCTGCCTGGACGGGGCCTTTCACAGGACCCGGCACAGACATGAGCCAGAGCTTGGGCCTGAATGTGGATGCAGGTCTGCAGCCCCAGGATAAAAGCAAGGACCTTTACTGGTTTTAAAGTGCTCCTGCATCTACCTCCCTTGGCTGCCCTGTTTATCTCTAcctttttgaaattaaaaggcATTTTCTGTAACAGATTCTGATCTCGGTTTCAGCTCGACGTTACTCCCTTTGTGGCGGAGCCCTCCTGAGCTGATTAGTTACCACAGCTAAACCCACAAGAAACGAGAAGGAATCTGATCAGAGGAACTGATCTTCAGCAGAGCAAAAACAGCAAGGAGACGATGGAAATGATGCCTTTCCCCATGAAGAACCGAGAAAGAGTGCCGTGGACAGATATTTGTGATCAGTTTAGGATGAGCACTTGAAATAATGAACTCTCTTGAGGAAGTGCGAAAGGACAGATTTTCACTAAAGAAGACTTGAGAACATTCTGCTGTAAATGTTAATTCATTCACTTCACATCCTGAAATGAGATTTGTAATCACCATGCAAGAAAATAGCAACTTTACAGTAATGAATAAGCaaaaaaagaagtaaaaatCATAAAGAATTAGCCGTTATTATGATCTGAATTGTGCAGTGGTTATTTGAGGCCACCTGATTTAAGACTGCTCCACTGCAGCTGTCGAGAACAACTGTTCGAACTCAACAGACTCACAATTAAGGTGGCACTTTACTGAGTTTGACCAAACAAGTGCTTCGGACTTCTTACAAGGAGCATTTTGTGAAATCTGGACCCTCCCCCAAATGAAAATAAGACAGCCTTCACAGGGAACAACTGGGCAAAGCAGCAGGAGCAAAGATCAGCAAAGAGCACATTGTGGACACATGATCCCTGTGACTAGGagctctttctgtgtgtgtgtgttgctgtcttTCTGCCATCTGAGTCGTTTTATAGGATTGAAATAAGAGACATTTGTAACTGTATAAAGAGCTACATTAAAGATCTTTATTACAAAGGTCTTCAGTCTTTGAGTCTTTGCTCGTCCGTAGGAAGTCAAGCTTTAGCTAAGGTTTTCGAAATAAGCACATTAATATATTCcctttaaagtatttattttgctaagaCATTCATGGTGTAAAtgttacatgttttcttttgtagcAATCTGTGGATAGGAAAGAACACcaccatttaaataaaagtgaaagtGCGGCTCGTCTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004344 True 2270 mRNA 0.48 4 43725672 43734731

Neighbor

gene id symbol gene type direction distance location
AMCG00004340 NA coding downstream 54424 43635147 ~ 43671248 (-)
AMCG00004341 NA coding downstream 116937 43605869 ~ 43608735 (-)
AMCG00004339 NA coding downstream 121547 43593153 ~ 43604125 (-)
AMCG00004334 slc35f1,LOC107697151,LOC107678858,LOC107743307,LOC107549682 coding downstream 186262 43519979 ~ 43539410 (-)
AMCG00004337 slc35f1,LOC107727669,LOC107678858,LOC107743307,LOC107697151 coding downstream 211236 43485269 ~ 43514436 (-)
AMCG00004345 NA coding upstream 43418 43778149 ~ 43789688 (-)
AMCG00004347 NA coding upstream 264186 43998917 ~ 44002983 (-)
AMCG00004348 nectin1,LOC102782356 coding upstream 280388 44015119 ~ 44047238 (-)
AMCG00004350 pvrl1b,LOC107563312,LOC107691861,LOC107758086,LOC107670612,LOC107561861,LOC106581605 coding upstream 352645 44087376 ~ 44091833 (-)
AMCG00004349 nectin1,LOC102782356 coding upstream 367352 44102083 ~ 44111125 (-)
G7419 NA non-coding downstream 488062 43235818 ~ 43237610 (-)
G7336 NA non-coding downstream 987822 42725912 ~ 42737850 (-)
G7335 NA non-coding downstream 1005981 42692754 ~ 42719691 (-)
G7270 NA non-coding downstream 1412554 42312919 ~ 42313118 (-)
G7268 NA non-coding downstream 1460695 42264690 ~ 42264977 (-)
G7554 NA non-coding upstream 133732 43868463 ~ 43868706 (-)
G7580 NA non-coding upstream 348366 44083097 ~ 44089780 (-)
G7583 NA non-coding upstream 442915 44177646 ~ 44177988 (-)
G7585 NA non-coding upstream 601540 44336271 ~ 44336570 (-)
G7587 NA non-coding upstream 673629 44408360 ~ 44408665 (-)
AMCG00004336 NA other downstream 275417 43402953 ~ 43450255 (-)
AMCG00004313 NA other downstream 1194666 42376726 ~ 42531006 (-)
AMCG00004302 NA other downstream 1658008 42064989 ~ 42067664 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other downstream 3876549 39841935 ~ 39849123 (-)
G6441 NA other downstream 6356850 37367985 ~ 37368822 (-)
G7608 NA other upstream 786183 44520914 ~ 44522213 (-)
AMCG00004364 NA other upstream 805432 44540163 ~ 44561575 (-)
AMCG00004372 LOC108423781,LOC105921217 other upstream 888459 44623190 ~ 44712051 (-)
G7868 NA other upstream 2572195 46306926 ~ 46307319 (-)
G7882 LOC107575789 other upstream 2733394 46468125 ~ 46468434 (-)

Expression


Co-expression Network