AMCG00004345


Basic Information

Item Value
gene id AMCG00004345
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 43778149 ~ 43789688 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004345
ATGCCAATGAAAAGGATCGCTGTGTGCCCAAATGGCCTGGACTCATTTCATCAGCCCCCCCCAAAGATGCCCTGCAGAGTGCAGGAGCAGCCCTACACAACTGCGCTGGGGGGCGAGGAAGAGCACGCCGCAGAATTAACAAGCAATTCCGCACCAAAgtgtgaggaggaagaggaggatttAGGTATTAAGTCAGAAGACTGCAACGAAACGCCTTCCTCTGAAGAGGACCTGGACTCGCCAGAAAGCCGAAAAGATTTAGTTTTCAAATCTATCCAGAAGAAAAGTATTACTCAGATAATCAAGGacaagaaaaagcaaacacagcTGACTTTACAGTGGAAAGAAAAACTGGATCCCGCTTGTGCTGCTACCTTTGGGAAGaCTATCCGCCAGAAATTCCCTCTCCTGACTACAAGGCGTCTTGGAACTAGAGGTCACTCAAAATATCATTATTATGGAATCGGCATTAAAGAAAGCAGCGCATATTACCACTCTGTGTACTCTGGAAAAGGCTTGACAAGattttctgGAAGCAAGTTAAAGAACGAGGTGGACACCCTCATCATGATGTACAAAACTCACTGCCAGTGCATTTTGGACAATGCAATAAATGGCAATTTTGAAGAGATACAGAATTTCTTGCTTCATTTCTGGCAGGGAATGCCTGACCACCTTTTACCCCTGCTGGACAATCCCATCATcgttgacattttctgtgtgtgtgactccaTATTGTATAAAGTGTTGACTGATGTTCTAATTCCTGCTACAATGCAGGAAATGCCTGAAAGCTTGCTTGCAGAAATCAGGAACTTCGCAAAGCACTGGGAGCACTGGGTGGTCTCATCTCTTGAGAATCTACCAGATACCCTGTCTGAGAAAAAGCTGCCAATTGCACGAAGATTTGTGTCCTCATTAAAACGACAGACTTCATTTTTACATCTAGCCCAGATTGCCAGACCAGCTTTGTTTGACCAGAATATTGTGAACTCAATGGTGTGTGACATTGAAAAGGTGGATTTAAACAGCATTGGTTCACAAGCCCTCCTCACTGTCTCTAGTGGCAGTGACCAAGACTCAGACTTGTATTCAGAATATGACTCTATTACAGTGTTCCAAGAGTTAAAGGACCTTCTTAAGAAAAATGCAACCGTGGAATCGTCCATTGAATGGTTGGACACTGTGGTGGAGCACAGAGTCATAAAGcCAAGTAAGCAAAATGGTCGGTCTCTTAAAAGGAGAGCTCAAGATTTCCTCCTGAAATGGAGTTTCTTTGGGGCAAGAGTGATGCACAACCTCACTTTGAACAATGCAACAAGTTTTGGTTCATTTCACTTAATCCGAATGCTGTTGGATGAGTATATCCTATTGACTATTGAAACACAGTTCAACAATGACAAGGAGCAGGAACTCCAGAATCTGTTAGACAAGTATATGAGAAATGCagatGCCAGCAAAGCAGCGTTCACAGCATCTCCGAGCTCCTGTTTTCTTGCCAACCGTAATAAATCCAGCACTATCTCCAATGAGTCGTCTGTAAAAAATGAATCCCTCTCAGAGCACCCATACCTGTCTCTGACAGCTAACCAGCACAGCATGGGCACAAACATGACTGTCTTCCCAGGTGCAGAGTCAGACAGCATCCCAATACCAGGGCAGATGGATCTTTCCCAGAGCAGTGGCCCCCTGATGACCCCGCCCATCTCCCCAGCACTGATGAACAGAGGAAGCGTGATAAACCAGGGCCCAATGGCGGGAAGATCTCAGACTGGCTGCACAGCCTTACAGACACATGGCACCTGCCCCACATTCTCTGACCCGATGTACCAGAGCCTGCCACCGGCCAACCCAAACTATTATGCCACCGGCTCAAACTATCAGCCCATGTTCAGGCCTCAGACTCATGGGCCTGCAGTGTATCAGCACCGCACGGACAGCAGCCGCTACACGTCATTTAGCGACCAACAGTTGTCTAAGGATTACTTCAGTAGCAGCTGTGCTGTTTCCCCTTACAACTCCAGGCCCACGTCCAACTTTGGCTCTCCGCCAGATGCCAATGCAGAGGCACAAAACATGCAGCTGATTAACTCGGGGAACTATAATTTTATCGGAAACTCACTGAGTGGAAGCTGTCAAGGAACATCCTATCCAGCTGTTGGACCAAATGGTTACTATGGAAACAGCAGTTACCATGACACTCAGAGACTCAGCTCTATGATAGACCAACACGTGTCTGTAATTAGCACTGTAAGCACTATACGCTCAGTACCAGTGTACAGTGACATCCACGACCCACTCAACATTTTAGATGACACCGGCAGGAAGACATCAGGCACTTTTTACACAGACTCTTCGGGATTAGTTTGCCAATCCCCTGTAGgTTCGAATATGCCAGCGGCAGTTTCCTCCTCTGCTCCCTCCCATTGCATGTATGGAACATCAGGCCAGTACCCTTCCCAGGATGCAATGCCCAGTCACAGGCCATCTGCTGAAGTCAGAGACATGGTGTCATCTCTGCCCCCCATCAATACTGTCTTCATGGGAGCGGCA

Function

GO: NA

KEGG:

id description
K19521 RFX6; regulatory factor X 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004345 True 2553 mRNA 0.47 18 43778149 43789688

Neighbor

gene id symbol gene type direction distance location
AMCG00004344 NA coding downstream 43418 43725672 ~ 43734731 (-)
AMCG00004340 NA coding downstream 106901 43635147 ~ 43671248 (-)
AMCG00004341 NA coding downstream 169414 43605869 ~ 43608735 (-)
AMCG00004339 NA coding downstream 174024 43593153 ~ 43604125 (-)
AMCG00004334 slc35f1,LOC107697151,LOC107678858,LOC107743307,LOC107549682 coding downstream 238739 43519979 ~ 43539410 (-)
AMCG00004347 NA coding upstream 209229 43998917 ~ 44002983 (-)
AMCG00004348 nectin1,LOC102782356 coding upstream 225431 44015119 ~ 44047238 (-)
AMCG00004350 pvrl1b,LOC107563312,LOC107691861,LOC107758086,LOC107670612,LOC107561861,LOC106581605 coding upstream 297688 44087376 ~ 44091833 (-)
AMCG00004349 nectin1,LOC102782356 coding upstream 312395 44102083 ~ 44111125 (-)
AMCG00004357 NA coding upstream 697720 44487408 ~ 44495762 (-)
G7419 NA non-coding downstream 540539 43235818 ~ 43237610 (-)
G7336 NA non-coding downstream 1040299 42725912 ~ 42737850 (-)
G7335 NA non-coding downstream 1058458 42692754 ~ 42719691 (-)
G7270 NA non-coding downstream 1465031 42312919 ~ 42313118 (-)
G7268 NA non-coding downstream 1513172 42264690 ~ 42264977 (-)
G7554 NA non-coding upstream 78775 43868463 ~ 43868706 (-)
G7580 NA non-coding upstream 293409 44083097 ~ 44089780 (-)
G7583 NA non-coding upstream 387958 44177646 ~ 44177988 (-)
G7585 NA non-coding upstream 546583 44336271 ~ 44336570 (-)
G7587 NA non-coding upstream 618672 44408360 ~ 44408665 (-)
AMCG00004336 NA other downstream 327894 43402953 ~ 43450255 (-)
AMCG00004313 NA other downstream 1247143 42376726 ~ 42531006 (-)
AMCG00004302 NA other downstream 1710485 42064989 ~ 42067664 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other downstream 3929026 39841935 ~ 39849123 (-)
G6441 NA other downstream 6409327 37367985 ~ 37368822 (-)
G7608 NA other upstream 731226 44520914 ~ 44522213 (-)
AMCG00004364 NA other upstream 750475 44540163 ~ 44561575 (-)
AMCG00004372 LOC108423781,LOC105921217 other upstream 833502 44623190 ~ 44712051 (-)
G7868 NA other upstream 2517238 46306926 ~ 46307319 (-)
G7882 LOC107575789 other upstream 2678437 46468125 ~ 46468434 (-)

Expression


Co-expression Network