AMCG00004348 (nectin1,LOC102782356)


Basic Information

Item Value
gene id AMCG00004348
gene name nectin1,LOC102782356
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 44015119 ~ 44047238 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004348
ATGTGCACTCTTCCTCAGGGTGTTCATCATCATGaGAAACCGCTACCTCAGGGAGCCCCCGGGGGTGTGATCGGGATCCTGGGCGGTGTGGTGGCAGCCGGGCTGATCATAGGTGTGGCCATCACTGTGTTCGTGGTGTACCGGCGCCAGCAGAAGACACGCACTGAGACCGACAACGACCTGACAGACTTGCCTCCTGCCCACAAACCAGCCCCTCCCCCACCCAAGAAGAAGACCACTGAGATGAAGAGTCACCTCACTGCAGACGATATTCAGGTGGTTCACCTGGACAAACCTGAGGAGGAAATGCAGAAGCTTCCCCTTCAGCCTCCATATTATGACATGGCGCCCTCTGAGTCTGCTCCCTACTCAGACAAGCTGAACGCTGGACACAAGGACTATGATGTCCAGTACGCGGAGCTGGACACCTCTGCTCTGGCATCTTCGCCCAGCCCACGAAGCTCCATTCACACTGGCGGGGACCTTGTCGAGTATGCAACCATCCAGCCTACCTTACGCTAG

Function

symbol description
nectin1 Enables cell adhesion molecule binding activity and identical protein binding activity. Predicted to be involved in several processes, including heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules; homophilic cell adhesion via plasma membrane adhesion molecules; and positive regulation of viral entry into host cell. Predicted to act upstream of or within several processes, including camera-type eye development; desmosome organization; and enamel mineralization. Located in adherens junction. Implicated in cleft lip; cleft lip-palate-ectodermal dysplasia syndrome; cleft palate; and ectodermal dysplasia.

NR:

description
nectin-1 isoform X7

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004348 True 522 mRNA 0.57 5 44015119 44047238

Neighbor

gene id symbol gene type direction distance location
AMCG00004347 NA coding downstream 12136 43998917 ~ 44002983 (-)
AMCG00004345 NA coding downstream 225431 43778149 ~ 43789688 (-)
AMCG00004344 NA coding downstream 280388 43725672 ~ 43734731 (-)
AMCG00004340 NA coding downstream 343871 43635147 ~ 43671248 (-)
AMCG00004341 NA coding downstream 406384 43605869 ~ 43608735 (-)
AMCG00004350 pvrl1b,LOC107563312,LOC107691861,LOC107758086,LOC107670612,LOC107561861,LOC106581605 coding upstream 40138 44087376 ~ 44091833 (-)
AMCG00004349 nectin1,LOC102782356 coding upstream 54845 44102083 ~ 44111125 (-)
AMCG00004357 NA coding upstream 440170 44487408 ~ 44495762 (-)
AMCG00004366 NA coding upstream 453636 44500874 ~ 44508818 (-)
AMCG00004356 NA coding upstream 477826 44525064 ~ 44527659 (-)
G7554 NA non-coding downstream 146413 43868463 ~ 43868706 (-)
G7419 NA non-coding downstream 777509 43235818 ~ 43237610 (-)
G7336 NA non-coding downstream 1277269 42725912 ~ 42737850 (-)
G7335 NA non-coding downstream 1295428 42692754 ~ 42719691 (-)
G7270 NA non-coding downstream 1702001 42312919 ~ 42313118 (-)
G7580 NA non-coding upstream 35859 44083097 ~ 44089780 (-)
G7583 NA non-coding upstream 130408 44177646 ~ 44177988 (-)
G7585 NA non-coding upstream 289033 44336271 ~ 44336570 (-)
G7587 NA non-coding upstream 361122 44408360 ~ 44408665 (-)
G7609 NA non-coding upstream 472937 44520175 ~ 44520818 (-)
AMCG00004336 NA other downstream 564864 43402953 ~ 43450255 (-)
AMCG00004313 NA other downstream 1484113 42376726 ~ 42531006 (-)
AMCG00004302 NA other downstream 1947455 42064989 ~ 42067664 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other downstream 4165996 39841935 ~ 39849123 (-)
G6441 NA other downstream 6646297 37367985 ~ 37368822 (-)
G7608 NA other upstream 473676 44520914 ~ 44522213 (-)
AMCG00004364 NA other upstream 492925 44540163 ~ 44561575 (-)
AMCG00004372 LOC108423781,LOC105921217 other upstream 575952 44623190 ~ 44712051 (-)
G7868 NA other upstream 2259688 46306926 ~ 46307319 (-)
G7882 LOC107575789 other upstream 2420887 46468125 ~ 46468434 (-)

Expression


Co-expression Network