AMCG00004350 (pvrl1b,LOC107563312,LOC107691861,LOC107758086,LOC107670612,LOC107561861,LOC106581605)


Basic Information

Item Value
gene id AMCG00004350
gene name pvrl1b,LOC107563312,LOC107691861,LOC107758086,LOC107670612,LOC107561861,LOC106581605
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 44087376 ~ 44091833 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004350
ATGGCCAAGGTGTCTTGCGGCGCCAAATTCCCTAACATCCCGCCACCCAGCGAGCGCGAGATCCCGGCGGAGGAGCGCAGTTCTGGGGCCGCCATCGGGGGTGCTGTGGGGGGAGTGGTCCTGCTGGGCgtggctgctgtgctgctgttcgTCTTCCTGCGCCGCCGCCAGCGCACCTTCAAGGGCGACTACAGTACCAAGAAGCACGTGTTCGGAAACGGCTACAGCAAAGCCGGCGGGCTGCCCCCACACCCTCCGCTGCCCCAGAACCTGCAGTATCCCGAGGACTCAGACGACGAGAAGAAGCCTGCGCCCGTCGGGGGACCCGGCGGCTTCGAGGGCAGCGATCGGGATTTCGACCCTGATGCCGAGGACCTGAAGAGACCCTACTTCACGGTGGATGAAGGCGAGAGCCGTGACTTCGACGAACGGACTCTGGCTTTCCAGTACGACCCCGAGCACGAGATTGCCGACGACATGGTCTCCCAAACCGACGGCTCTGTCATTTCAAAGAAGGAGTGGTACGTGTAG

Function

NR:

description
PREDICTED: nectin-1-like isoform X7

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004350 True 531 mRNA 0.64 2 44087376 44091833

Neighbor

gene id symbol gene type direction distance location
AMCG00004348 nectin1,LOC102782356 coding downstream 40138 44015119 ~ 44047238 (-)
AMCG00004347 NA coding downstream 84393 43998917 ~ 44002983 (-)
AMCG00004345 NA coding downstream 297688 43778149 ~ 43789688 (-)
AMCG00004344 NA coding downstream 352645 43725672 ~ 43734731 (-)
AMCG00004340 NA coding downstream 416128 43635147 ~ 43671248 (-)
AMCG00004349 nectin1,LOC102782356 coding upstream 10250 44102083 ~ 44111125 (-)
AMCG00004357 NA coding upstream 395575 44487408 ~ 44495762 (-)
AMCG00004366 NA coding upstream 409041 44500874 ~ 44508818 (-)
AMCG00004356 NA coding upstream 433231 44525064 ~ 44527659 (-)
AMCG00004361 NA coding upstream 442731 44534564 ~ 44538108 (-)
G7554 NA non-coding downstream 218670 43868463 ~ 43868706 (-)
G7419 NA non-coding downstream 849766 43235818 ~ 43237610 (-)
G7336 NA non-coding downstream 1349526 42725912 ~ 42737850 (-)
G7335 NA non-coding downstream 1367685 42692754 ~ 42719691 (-)
G7270 NA non-coding downstream 1774258 42312919 ~ 42313118 (-)
G7583 NA non-coding upstream 85813 44177646 ~ 44177988 (-)
G7585 NA non-coding upstream 244438 44336271 ~ 44336570 (-)
G7587 NA non-coding upstream 316527 44408360 ~ 44408665 (-)
G7609 NA non-coding upstream 428342 44520175 ~ 44520818 (-)
G7684 NA non-coding upstream 540919 44632752 ~ 44633282 (-)
AMCG00004336 NA other downstream 637121 43402953 ~ 43450255 (-)
AMCG00004313 NA other downstream 1556370 42376726 ~ 42531006 (-)
AMCG00004302 NA other downstream 2019712 42064989 ~ 42067664 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other downstream 4238253 39841935 ~ 39849123 (-)
G6441 NA other downstream 6718554 37367985 ~ 37368822 (-)
G7608 NA other upstream 429081 44520914 ~ 44522213 (-)
AMCG00004364 NA other upstream 448330 44540163 ~ 44561575 (-)
AMCG00004372 LOC108423781,LOC105921217 other upstream 531357 44623190 ~ 44712051 (-)
G7868 NA other upstream 2215093 46306926 ~ 46307319 (-)
G7882 LOC107575789 other upstream 2376292 46468125 ~ 46468434 (-)

Expression


Co-expression Network