AMCG00004352


Basic Information

Item Value
gene id AMCG00004352
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 44549432 ~ 44552133 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004352
GTCAAGTCAAAGTCCCAGAGCAGTGCATCCACCCCCTCTGTGATTGGCCGTTCAGAGAGGATGGACTCCTCCCACACTGTTGCAAACACCCTGAgacttgcttttcttttcatcaaGTTTCCCACTTCCAGCAGCAAATtcccctttttatttaatttgatttctccAGCGAGGCTCTCCAGTGTGTTGGGTAACAGATGTCTACCTTCAATGACGAAGCAGTTCTGCAGTCGATCTTCAGTCCCGTCGCTCCAGTCGGCGATGTGCCGGGCTGCACCGCAGACGCCCCGCAGGATGATGACAGTGGCTTTGACCCTGAGCTCCTGGTGCAGGTGAAGGAGCTGGAGGTGCAGGGAGCACTGGAGGACCTGGAGCGAGCCATCTCTCTGAGCGGGGCGGCTGGGCAGTCTGGCTGCCAGGCCCTGGTGCAGCGTGGGCTGCTGCTGCGGCTGTCTGGGCAAGACGAGGAGGCGCGGCATGACTTTGCACGGGCGGCCGAGCTGGGCAGTGCCTTCGCCCGGCATCAAGCAGCGCTGCTCAACCCCTATGCCGCTCTCTGCAACCGCATGCTGGCACAGGTCATCCACAAACTGCGCAACCCAGATGTGCCCAGTCAGCAGGAGCTGTAGTGGAGCTGGGGAATGGAGCAACCgatggagaggaagaggagggggaaggAGCGGAGAGGAGAGGAGTAGAGGCAAGATGTGTGAGCTGCTGTGAGCTGTGTTTGGAGCCCCCTGCTAGAgttcaatgaataaataaacagttccTTGAA

Function

GO: NA

KEGG:

id description
K24941 TTC36, HBP21; tetratricopeptide repeat protein 36

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004352 True 778 mRNA 0.58 3 44549432 44552133

Neighbor

gene id symbol gene type direction distance location
AMCG00004353 NA coding upstream 37106 44511847 ~ 44512326 (+)
AMCG00004354 NA coding upstream 50525 44498428 ~ 44498907 (+)
AMCG00004351 NA coding upstream 138381 44410599 ~ 44411051 (+)
AMCG00004346 NA coding upstream 750957 43795221 ~ 43798475 (+)
AMCG00004343 NA coding upstream 827453 43671020 ~ 43721979 (+)
AMCG00004367 LOC107691633,LOC105921217,LOC103395053 coding downstream 155880 44708013 ~ 44711574 (+)
AMCG00004368 NA coding downstream 161892 44714025 ~ 44732599 (+)
AMCG00004374 NA coding downstream 516782 45068915 ~ 45096943 (+)
AMCG00004375 NA coding downstream 573791 45125924 ~ 45143449 (+)
AMCG00004378 NA coding downstream 750432 45302565 ~ 45307246 (+)
G7614 NA non-coding upstream 6289 44530340 ~ 44543143 (+)
G7584 NA non-coding upstream 212751 44336451 ~ 44336681 (+)
G7569 pvrl1b,nectin1,LOC107563312,LOC107758086,LOC107691861,LOC107670612,LOC107561861 non-coding upstream 461395 44078345 ~ 44088037 (+)
G7485 NA non-coding upstream 954354 43591750 ~ 43595078 (+)
G7441 NA non-coding upstream 1202473 43346350 ~ 43346959 (+)
G7638 NA non-coding downstream 22198 44574331 ~ 44574997 (+)
G7644 NA non-coding downstream 35573 44587706 ~ 44587984 (+)
G7662 vps11,LOC107588528,LOC107578557,LOC107691631 non-coding downstream 64183 44616316 ~ 44617399 (+)
G7765 NA non-coding downstream 1367257 45919390 ~ 45921805 (+)
G7879 NA non-coding downstream 1838255 46390388 ~ 46390751 (+)
G7329 fabp7,LOC108247051,LOC104945778 other upstream 1858323 42688779 ~ 42691109 (+)
AMCG00004304 NA other upstream 2333070 42210430 ~ 42216362 (+)
G7094 NA other upstream 3042201 41459576 ~ 41507231 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 4208197 40326410 ~ 40341235 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 6701712 37832623 ~ 37847720 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 66052 44618185 ~ 44640732 (+)
AMCG00004380 NA other downstream 1409877 45962010 ~ 45968306 (+)
G7999 NA other downstream 3594755 48146888 ~ 48147156 (+)
AMCG00004421 NA other downstream 4344984 48897117 ~ 49026355 (+)
G8099 NA other downstream 4380317 48932450 ~ 48934095 (+)

Expression


Co-expression Network