AMCG00004357


Basic Information

Item Value
gene id AMCG00004357
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 44487408 ~ 44495762 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004357
GTTAATTTCAAGTGGGGTATGTGTGCCTCGTCAGCCGTTATTTTCCGGTTCGACTTTTTCTCGCTCTGTCTTAGCCCACTGGCTTTCCGTCGCTTGGCCAGTTGTTTTCAGGGAACAGTAATGGCAGCCTCCAGCAACTTGGGCGCAGCGGGCACTCTGTCGAAAGCCGAGTATCTCAAGCGGTATTTGTCCGGAGACGGAGATGCAAACAAAACCAAGGACAAAAAGATCAAGAAGAAAAAAGCGAAGCCTCTCGGAAAGGGGATGAGGATAGTGGACGACGATGTGGATTGGAAGCAGCTGATCCAgacagaggagaaggagaaccatgaggaggaggaggaggaagaggaggcgcCAGTGGTGGCGGAGGTGATCGACGAGCGGCCGGAGGAGGTGAGGAGTTTGGAGCAGTTCAGGACCAGCAACAAGTGGAGGCTGATGGGAGGTAAGAACGAAGACTCTCAAGACTCGGATCATTTGCAGGTCTCTCACTCATCGGCAAGCTCAGGAACTGAATCTCTGAGGAAGACTGAAGGAAGGTCCTCGAGAGTCCGGCACGATTCTCCCGATCTCTCCTCTGCGAAACAAGAACGCCATGACTCCCCTGATCTCTCGCCTCAGAGGAAGAGCCGCCATGACTCCCCTGATCTCTCGCCTCGGAGGCAGAGGGAAGACGGCAGGATAGTGCATCACGACTCGTCATCGCCCTCACCCCCACGCAGGACTCGTGGTGGCAGCTCTCCCTCTGCTCAGAAAACACGAGGCAAAGATTCATTGCCCAGAAGGAAAGGGAAAGCTGCTTCAGCTTCTCAGCAGCACAGCGGACCTGACTCCCACCTGTCCCCACCCCGGCGACGCCAGCAGGCTGGCTCCGACTCCGACCTCTCCCCACCGAGACGGAAAGCCCGGCGCTCTCCGGACTCCGACCAGTCCCCCCGGCGACGCCCTAAGGCTGGCTCTGACTCTGACCTTTCCCCCACCCGGCGACGCCCCCAGGCTGGCTCTGACTCTGACCTGTCCCCCCCCCGGAAGGCCAGGCGCCCATCTTCTCCCAGTGCACAGGGGGCTGTGAGGATGCTGTCAGGGGCGGCGGCAGGACTGGTGTCTGTGGAGCTACTGAGGAAGGAGCGTGAGGAGAGCCGCCGGCACGAGAGGGACAGCCAACACCTGGAGGAGGCGTCAAGGAACGCAGATACGATTTTCCGAGACAAATCCGGGAAAAGGCGGGACATCGACCAGGAACGGGAAGAGCAGCGCAGGAAAGCTGGGGAGAAGGCAGAGAAAGACGAGAAATACGCACAGTGGGGGAAAGGGCTGGTCCAAGGTGAGATGCAGCAGCGCAATGTGGAGGCGGCGCTGCGGGAGGCCCAGAAGCCCCTGGCACGACACATCGATGATGTTGACCTGGACCAGATGCTGCgggagcaggagagggagggCGACCCTATGGCCGGCCTGCTGCGCCGCAAGAAGGAGAAGGACTCACAGCGCCAGGGGGTGCCAGAGAAGCCGCGGTACAAGGGCCCGGCACCGCCCCCCAACCGCTTCAACATAGCCCCTGGGTACCGCTGGGACGGGGTGGACAGGTCGAACGGGTTTGAGAGGCAGCGCTACAGCAGGTTGGCGGACAAGAAGGCTGTGCAGGAGATGGCCTACAAGTGGAGTGTGGAGGACATGTGAGGAGTCGGCCTTGCTGAGGCCACCCCTACCATGCAGGCTGCATTCCTGCCGCTCTCTCCACAGGATGCGGCCGGCTGCTCCCGCTGCTCCGGGGCTCGAAGGCAGTGCGGTCTGTGCTGGGTCACGGGTCATTGAGGGGACATACGCACAGACACATGCGCACTTCAGAGTCTGGCCACTACTGCTGTCTGTGCCTGGCACAGTGAGGCACGCTGCAATCATCGGGACTTCCCCAAGAAGGAACGGTTTGGgagttgctttttttttttttttttggtgttcgTTTCAGTTTCGACAGACCTCTTGAGACAGTGGCGACTTTACACAGATCCCTTCAGTACAAATGGCATTTTTTTGGTGGTCATTTTCAACAATTAAACCTGTAGTTTttgtatagtattttttttttttccctcttccttTCAAAGTGTTTGGCTGTTTTGAAATCAAATGTGGAGTTGCCTTTTTGTAAGCTTCCATGATGAAAACTATACCGCAGCAGGGACTTCCAATCAAGCGTCCCATGAGTCATCTAATACGCTGCCTGAGCTGACCACAGTCAGAGCTGGAAAGACTTAAGATTCGGATGCAGATCTTTGTACAGAACAACTGGATTCCTTTTTGATTAATTGTGCTCATTTGTGAATAAACAGTCAAATAAGAACTCACCCTTTATATTGAAATGACTTTTAGTCTGTTTGTACAGCTGTTTCTATGCTGAGCTCTTTTGAGCCCTTGGTTTCCCACTATGGCGACTACATTTGATATCTGTGGACCTGTTGGATTTAATGACCATTTTCTATTTGTGGTACAAGTACATGATGTGCCTGTGGCAGTGTAAGCCCCAGCAAAATCATATTGACAGAACTCGCTGTGAATGAAAACGATGCCGAGTTTGCTGTTGAAGTCGGATGCCTGCGTCGATCCTGTGGTTAATGTTAATGTTCTCCAGCAGTTTGTTGTCAATTCTGTTTTAATCAAAGCTTATGAAACTGTATGAAATCATATaaacaatattgaaatgaaatccAAAATAAAAGATTGATTGCAATTgtaccaaaacacaaaacacattgcaAACTGTATACATACTTAAATTTGAAGAGTTCCATACAGAGGAAAATACATAGTTCAATGACAAATTTCTGTGTCGCAATCTTTTTTTAGATTCAGGATGgcgttttttcagttttaaagggGGAAATAAATTTAATCTTAA

Function

GO: NA

KEGG:

id description
K13106 BUD13, CWC26; pre-mRNA-splicing factor CWC26

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004357 True 2902 mRNA 0.53 11 44487408 44495762

Neighbor

gene id symbol gene type direction distance location
AMCG00004349 nectin1,LOC102782356 coding downstream 376283 44102083 ~ 44111125 (-)
AMCG00004350 pvrl1b,LOC107563312,LOC107691861,LOC107758086,LOC107670612,LOC107561861,LOC106581605 coding downstream 395575 44087376 ~ 44091833 (-)
AMCG00004348 nectin1,LOC102782356 coding downstream 440170 44015119 ~ 44047238 (-)
AMCG00004347 NA coding downstream 484425 43998917 ~ 44002983 (-)
AMCG00004345 NA coding downstream 697720 43778149 ~ 43789688 (-)
AMCG00004366 NA coding upstream 5112 44500874 ~ 44508818 (-)
AMCG00004356 NA coding upstream 29302 44525064 ~ 44527659 (-)
AMCG00004361 NA coding upstream 38802 44534564 ~ 44538108 (-)
AMCG00004365 NA coding upstream 65906 44561668 ~ 44568560 (-)
AMCG00004362 NA coding upstream 80782 44576544 ~ 44586109 (-)
G7587 NA non-coding downstream 78743 44408360 ~ 44408665 (-)
G7585 NA non-coding downstream 150838 44336271 ~ 44336570 (-)
G7583 NA non-coding downstream 309420 44177646 ~ 44177988 (-)
G7580 NA non-coding downstream 397628 44083097 ~ 44089780 (-)
G7554 NA non-coding downstream 618702 43868463 ~ 43868706 (-)
G7609 NA non-coding upstream 24413 44520175 ~ 44520818 (-)
G7684 NA non-coding upstream 136990 44632752 ~ 44633282 (-)
G7704 NA non-coding upstream 301744 44797506 ~ 44879219 (-)
G7714 NA non-coding upstream 643380 45139142 ~ 45143452 (-)
G7744 NA non-coding upstream 1322236 45817998 ~ 45852813 (-)
AMCG00004336 NA other downstream 1037153 43402953 ~ 43450255 (-)
AMCG00004313 NA other downstream 1956402 42376726 ~ 42531006 (-)
AMCG00004302 NA other downstream 2419744 42064989 ~ 42067664 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other downstream 4638285 39841935 ~ 39849123 (-)
G6441 NA other downstream 7118586 37367985 ~ 37368822 (-)
G7608 NA other upstream 25152 44520914 ~ 44522213 (-)
AMCG00004364 NA other upstream 44401 44540163 ~ 44561575 (-)
AMCG00004372 LOC108423781,LOC105921217 other upstream 127428 44623190 ~ 44712051 (-)
G7868 NA other upstream 1811164 46306926 ~ 46307319 (-)
G7882 LOC107575789 other upstream 1972363 46468125 ~ 46468434 (-)

Expression


Co-expression Network