AMCG00004364


Basic Information

Item Value
gene id AMCG00004364
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 44540163 ~ 44561575 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004364
ATGGCCTTACTTGATGTTACTGCTCCAGCAATGGCCGCACCTCAACTATGCCTTGCTGCCCTAGCTGTCCTAGCTCTTCTGCACGTAGTGTGTCCCCAGAGCTGCCCCACTGACCCCGGGACCCCAGGCCTGCCCGGAATACCAGGCCTGCCCGGCCGTGATGGGCGAGATggagagaagggggagaaaGGAGCGCCAGGAGACCCTACCCCACCAGGCCAGATGGGGCAGAAGGGACAGAAGGGGGAGCTGGGCGGGGCAGGCATGCTGGGGAAGATGGGCCGCAGTGGCACAAAGGGTGCTAGAGGGTTGGCTGGGCTGCGTGGGCCTCCAGGTGACATGGGGGAGTCGGGCTTCTACGAGCTGGCCCTGCAGTCGGCTTTCAGTGTGTCGCGGCGCACAGTGGACCACCCGGCCAAGAACACACCCGTGCGATTCACCACCGTCATCACCAACATCAACGGCCACTACAATACAGACGTCGGCAAGTTCCGCTGCCACATCCCCGGCTCCTACTACTTCGTCTACCATGCCTCATCTGACGCCCACCTCTGCCTCACCCTGGTGAAGGATGAAGAGAAGGTGGCCAGCTTCTGCGACCACATAACCTCCGATTACCAGACCAGCTCCGCGGGGCTGGCGCTGCGGCTGGAGAAGGACCAGGAGGTGTGGTTAGAGACCAATGACTACAACGGCATGATCGGCACCGTGGGCAAGCAGAGCGTGTTCTCGGGCTTCCTGCTTGACACCTGCAGCGCTGAGAGAGGTTACCCAGGCATCCCCGGACTGCCAGGGGCTCATGGACCCAACGGGAGGGACGGAGAGAAAGGGGAGCCAGGAGAGAAAGGGGAGTCCAGTCAGCTGGTGAAGGGGCAGAAGGGGGACCCTGGGGAGCCTGGGAGCCCAGGGAGGGCTGGTCTGGTGGGGGACCCTGGGCTACCCGGGCTGCCCGGGCTGCCTGGACCCAAGGGTCCGAGGGGGTCGCCCATGGGCCTGACCCAGACGCAAAATGCAGTATTCTCCTTCAGGAAGTCTTCCAACATGCTGCCTCGCATACAGTCGCCCATCCGCTTCGATAGGGCCATCCTGTCCAGCGATAGTGTCCGGGGGGGGCGCTTCACCTGCAGCATTGCAGGCATCTACTACATTGCCTTCACCGCCTCGGCTCGTGGCCCTGTGTGTATCAATGTGAAGAAGGGCGATACCGAGGTGCTGGGCCTGTGCGACGCTGCACAGGAGGGCTACCTGGTGACGGCCGGCTCCGTGGTGCTGGAGTTACAGAAAGATGACGTGGTCACGCTGCAGCCCACTGAGAGGAACTCTGTGCTGGGCAGCAGCGGCTCAGACAGCATCTTCACTGGCTTCCTGCTATTTCCTTCTAAATTCTGTAGCGTCCTCAGTTCTGTAGTGCAGACGAGAGCAACTGGGAATAGGAACATATCAAACTTCAGACTGAAGGAGCAGATCAGATCTCCACTACAGCTCCTGCTGACTGGGCACATCTGGGTTGCGCAGTTTGTGGATGACCTGTGCCAGCATGCGGTTGCAGAGAGCGGCATAGGGGTTGAGCAGCGCTGCTTGATGCCGGGCGAAGGCACTGCCCAGCTCGGCCGCCCGTGCAAAGTCATGCCGCGCCTCCTCGTCTTGCCCAGACAGCCGCAGCAGCAGCCCACGCTGCACCAGGGCCTGGCAGCCAGACTGCCCAGCCGCCCCGCTCAGAGAGATGGCTCGCTCCAGCCCGGCACATCGCCGACTGGAGCGACGGGACTGAAGATCGACTGCAGAACTGCTTCGTCATTGAAGGACCCTTTCTTCACAGCATGGGAGCAGAATAGCGGCAGTAAATCTGTGGCCCGGCTGCTAAACAGCCTGTGGCTCCCCAGTCTGCCCTGGAGATCTTGCCTGGGTGAGGTGACAGTGGAGGAGAGACTGACACTGGCCCTGCCTACTCCGATGGACTGCTTCCATTGGAGGCAAGTGACACCTGTCATCCTGATGGGATCCAAACAGGTTGAGTCAAGCTGGCCGGGGCTGCAGGGCAGGGTTCTGCGGGAACAGGAGACCCAGTTCCAGGGACACAGGCGATACTCAGCTCACAGTGGAGCAGGAAAAAGACCCAGAAGCCGTGGCCATCTGGCAGGGAGCCCCAGAGAGCCACAAGAAGAGCAGAACGGCACCTTCGCGTGGCGCTTTGTTGAGTCCTTCGTGGCCAACGTGCTGAGAGACGAGCTCCTCCCAGACCTGCTGATCGAGGTGTTCTCTGAAGACAGCGCTCAGGAGTCTGTGGTGAAACTGACTGATAAAGACACTGTGAAGACAGACAGACGTTtTGGGGTAGTGCCGGGCAGGGTGTACGTGGAGCTGCTGCATGAAGTGACTGGAGAGGTGGTGTCTGCGGTGTTCCAGAGCTCCATCAGGGAGCATGTGGATGCCTACCTGGCCCAGGCAGCTGTTCGGCACTGTGTTGACAAGATCATCTCCGAGACGCTGGCCCCCCTCCTGCCCACACTGGTGCAGGAGGTGCAGGTTGAACTGGCAGAGGATGGGGTTGTGGAGTTTGACTTGCTTCCAGAGGTGTGCCAGAGTGCGGGCAGGCTGGTGGACGTGCTGCTCATGGGTCAGCTGGTGGAGCTGATGGCTGGCCAGGGGCAGCGCTTCAGGGAGCAGGAACAGGCAGGCTGGGTGCTGAACATCCTCCTGCACCGGCTGTGCAGTGCTCAGAGATTGCGCGATGCTACTCTGGAGAACTGGCCGCTGCGAGTTCACCACCGGCGCCTGTTCACGGACGTGGTGCTGGACGTCCTCCTATCCGAGCTGACGGAGGCTGTAGGGGAGGATCTGGAAGATCTGCTGGAGTATGAGCAGCTGGTGGAAGGAGCAGCTCTGCACTGACTGTGCGTCAAAAGGCAACACTCAGACACCGCAGCTAAAATAACCATGTGAGGAATGAGTGGAGAGATTCAGCGGCAGTTTGATGGCATGGCTCCATGTTCACTGGGACACTTTGAGACGGGATGGGGTTTTAATGTAGCCCTTAATGGAAAgacttacattttaatcaggcaTTCTTTACACAGTTGCCAAATTGAGTTATTTTGTG
>TU9388
tgcttaattaattttagtttgCCTGACTACATTAAATGAGGCACGCGCATGCGCAGTCTTGGTAAGAGCCAGAATACCCAGAATCCACTGCGCTCATGAGCGTTGAACGGTTACTATTTGCATACTTCTGTCCATAATAACATGTCTAGGTTTAATTGTAGTTTGTCAATTAAGTGATTCCCCTGGTGAGAGAGCGGAGAGGAATTCTTCAGAGAACTATTATTCCAAGcTTTAGCACAGGCTGCTAGCCCTCCAACTGATCTACCATCATCCTGCGGGGCGTCTGCGGTGCAGCCCGGCACATCGCCGACTGGAGCGACGGGACTGAAGATCGACTGCAGAACTGCTTCGTCATTGAAGGTAGACATCTGTTACCCAACACACTGGAGAGCCTCGCTggagaaatcaaattaaataaaaaggggaATTTGCTGCTGGAAGTGGGAAACttgatgaaaagaaaagcaagtcTCAGGGTGTTTGCAACAGTGTGGGAGGAGTCCATCCTCTCTGAACGGCCAATCACAGAGGGGGTGGATGCACTGCTCTGGGACTTTGACTTGACTGCAAGGAGAGAGCCTGTGTGTTTGATTAAGCAGGGGGCATGGTCACAGA

Function

GO: NA

KEGG:

id description
K03988 C1QG; complement C1q subcomponent subunit C

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004364 True 3100 mRNA 0.60 19 44540163 44561575
TU9388 False 615 lncRNA 0.48 2 44549382 44550322

Neighbor

gene id symbol gene type direction distance location
AMCG00004361 NA coding downstream 2055 44534564 ~ 44538108 (-)
AMCG00004356 NA coding downstream 12504 44525064 ~ 44527659 (-)
AMCG00004366 NA coding downstream 31345 44500874 ~ 44508818 (-)
AMCG00004357 NA coding downstream 44401 44487408 ~ 44495762 (-)
AMCG00004349 nectin1,LOC102782356 coding downstream 429038 44102083 ~ 44111125 (-)
AMCG00004365 NA coding upstream 93 44561668 ~ 44568560 (-)
AMCG00004362 NA coding upstream 14969 44576544 ~ 44586109 (-)
AMCG00004358 NA coding upstream 30102 44591677 ~ 44604309 (-)
AMCG00004360 vps11 coding upstream 44714 44606289 ~ 44617399 (-)
AMCG00004363 NA coding upstream 83709 44645284 ~ 44651272 (-)
G7609 NA non-coding downstream 19345 44520175 ~ 44520818 (-)
G7587 NA non-coding downstream 131498 44408360 ~ 44408665 (-)
G7585 NA non-coding downstream 203593 44336271 ~ 44336570 (-)
G7583 NA non-coding downstream 362175 44177646 ~ 44177988 (-)
G7580 NA non-coding downstream 450383 44083097 ~ 44089780 (-)
G7684 NA non-coding upstream 71177 44632752 ~ 44633282 (-)
G7704 NA non-coding upstream 235931 44797506 ~ 44879219 (-)
G7714 NA non-coding upstream 577567 45139142 ~ 45143452 (-)
G7744 NA non-coding upstream 1256423 45817998 ~ 45852813 (-)
G7820 NA non-coding upstream 1625931 46187506 ~ 46189689 (-)
G7608 NA other downstream 17950 44520914 ~ 44522213 (-)
AMCG00004336 NA other downstream 1089908 43402953 ~ 43450255 (-)
AMCG00004313 NA other downstream 2009157 42376726 ~ 42531006 (-)
AMCG00004302 NA other downstream 2472499 42064989 ~ 42067664 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other downstream 4691040 39841935 ~ 39849123 (-)
AMCG00004372 LOC108423781,LOC105921217 other upstream 61615 44623190 ~ 44712051 (-)
G7868 NA other upstream 1745351 46306926 ~ 46307319 (-)
G7882 LOC107575789 other upstream 1906550 46468125 ~ 46468434 (-)
AMCG00004398 anc13,anapc13,LOC107756075,LOC107693524 other upstream 2321717 46883292 ~ 46887754 (-)
AMCG00004403 cadm1a,LOC107548188,LOC107715321 other upstream 2486549 47048124 ~ 47306589 (-)

Expression


Co-expression Network