AMCG00004380


Basic Information

Item Value
gene id AMCG00004380
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 45962010 ~ 45968306 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004380
ATGGCCGGGACGGTGCTGGGCGTGGGCCCGGGGGTGCTCCTCATCGTGCTGGTCTGGATCGTGGCTCTGGCGCTGTGTTTCCTGCTCTCCAGGGCTGCCGGGGCTGCCAAGTTCTCGGTCGTGCCCGTGTTCCTCCTCGCTCTGGTTATAACGCTCATCCTCATTTTCTTCCCGCGGGCCCCAGAGACTGCCTCACCTGTGAAAGAAGTGGTGATCGTAGACACATTTTTCATCGGCCGCTATGTCCTACTGGCATGTGCTGGGGTCATTTTCTTGGCCAGTCTGTTCACGCTGCTGCCTCTTCATGTCTTGGAGCCCATCTATGCAAAGCCTCTGCGCACACACTAG
>TU9559
GCGTCAGTCACGGTGCTGTGGTGAAACGGCGGTTACCAAGGAAGCCGAGGAGTAAATCAGGTTACGAGACACGGACTCGGTTTCTGAATGCGTCCGCTGACGTCGCACACGTGTCCGGCGCGCAGGGGTGCGGCTGCTGGTGCTGTCCATGCAGAGCGGCATGTTACAGCTTAGGAATTGTTTCTCCCAAAAGTCACAGCAGACAATCAAACCTGCGAGAGTGAACGCGAAGTGGGTCAGCTGGCACGATTACACTATTTCCTGTACAGCGGATGTGATTGTTCGTATAGTCCCTGGCGTTTTCTTGTAATTGTGGCctgtgtttctttaattagaGGACAGCCCGGGCATCTTGTATGTTTCCCGATTCCAATCGCTTTGCCAGCGCATGTAgccaatgcaaataaaacatggcTACACGGGACTTAAAGAACTCCGCGAGCACAGGGACGACTGCGTGATGCTGGACGTGCTGCAAACACGACTAATTGCTTTGGGCACTTCGTGGTGCAAACGGCCGTATTCGCCCTGTTTTCACACAAGCCGTGCGAGGAACCGCGTTTGCACCGAATCCCTGCAGTTTACAGACAAGCTTTCACAACACAGGACACCGGTCTCATGTTAatgatgttttaatgtagatGCACCATCCCTttcatggtttattttgattCTGCGTGtttcttgctttgcttttgcacgcttgttttcttttctggtcGGTTGGCACTTGAGCCAGCGTGACTGTGTATCCGCCCCAGTATCAGCGTGTGTTTTGACGGCACCCGTATCCGGGACTCACCCTGCAGCTGCCCCGGTGGCTCCAGCCCTCCTCTCGGAGCCAGGCGGCGGTGTGGCCCGGGCGCGATGGCCGGGACGGTGCTGGGCGTGGGCCCGGGGGTGCTCCTCATCGTGCTGGTCTGGATCGTGGCTCTGGCGCTGTGTTTCCTGCTCTCCAGGGCTGCCGGGGCTGCCAAGTTCTCGGTCGTGCCCGTGTTCCTCCTCGCTCTGGTTATAACGCTCATCCTCATTTTCTTCCCGCGGGCCCCAGAGACTGCCTCACCTGTGAAAGAAGTGGTGATCGTAGACACATTTTTCATCGGCCGCTATGTCCTACTGGCATGTGCTGGGGTCATTTTCTTGGCCAGTCTGTTCACGCTGCTGCCTCTTCATGTCTTGGAGCCCATCTATGCAAAGCCTCTGCGCACACACTAGGACCTGGACCCAGGTGGGGTGTGGGTGGGCAGGGTTGATACATGCAGTGCTTCTTTAAGCAGGACACAGCAGGAAGACCAAGGACCAGCCACGCCCACCCTGTCGATGACTTCTCACACATTTGTTCTGGAGTTTGTTCTACAGTTATTAttaaaaggttatttttaaaaaaagggcAGAATTGAAGACTTCACACTGTAAGAGGTCTTCATTTTTTAAGACGTATATTAATACTTAGATTTCTCTTAGATTTTATTACCAGGTTCTAGCAATACAGATcagttctttttgtttttggttgtaatttttttaatatgctttatAAGTTATTactttacaattacaattgtttCCAATCATTCCAGTTGTTGTCAGGAAATGTTTGCTGGTTGTTCAGATTCCTTCAGGGAGTCACCGTCCATGGAGCCCAGGAAGCTGTGTTGTGGATCTCCGATGGGTAGGGGGCAGACTCATTCTGACTCAAACTCGGCTATTACAAGTACAGATCTCCCTTGTGTTTAAATAGTCTGGGGAATAATTAGATtagataattatttttaaatcctgaagAGCATTACGGTGTTTCTTTACTGCtttattttgcagcattttCCACAGTGAATGTAAAGTGTGATATCTGAGAGGAATCCCACATGTTCATATGtgcaagttttgttttctttcagtttatatgatttctgtttgtacagtgttcttaataaaaataaaaataaatgttacttttcAAA

Function

GO: NA

KEGG:

id description
ko03018 RNA degradation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004380 False 348 mRNA 0.59 3 45962877 45967557
TU9559 True 1964 TUCP 0.48 3 45962010 45968306

Neighbor

gene id symbol gene type direction distance location
AMCG00004379 NA coding upstream 102736 45821901 ~ 45859274 (+)
AMCG00004378 NA coding upstream 654764 45302565 ~ 45307246 (+)
AMCG00004375 NA coding upstream 818561 45125924 ~ 45143449 (+)
AMCG00004374 NA coding upstream 865067 45068915 ~ 45096943 (+)
AMCG00004368 NA coding upstream 1229411 44714025 ~ 44732599 (+)
AMCG00004384 NA coding downstream 13319 45981625 ~ 45999108 (+)
AMCG00004387 msantd2,LOC107588693 coding downstream 212232 46180538 ~ 46187407 (+)
AMCG00004388 NA coding downstream 268051 46236357 ~ 46254391 (+)
AMCG00004390 thyn1 coding downstream 317144 46285450 ~ 46289245 (+)
AMCG00004389 NA coding downstream 332546 46300852 ~ 46319307 (+)
G7765 NA non-coding upstream 40205 45919390 ~ 45921805 (+)
G7662 vps11,LOC107588528,LOC107578557,LOC107691631 non-coding upstream 1344611 44616316 ~ 44617399 (+)
G7644 NA non-coding upstream 1374026 44587706 ~ 44587984 (+)
G7638 NA non-coding upstream 1387013 44574331 ~ 44574997 (+)
G7614 NA non-coding upstream 1418867 44530340 ~ 44543143 (+)
G7879 NA non-coding downstream 422082 46390388 ~ 46390751 (+)
G7906 NA non-coding downstream 747472 46715778 ~ 46717255 (+)
G7911 NA non-coding downstream 753523 46721829 ~ 46723088 (+)
G7949 NA non-coding downstream 1023911 46992217 ~ 46997805 (+)
G7974 NA non-coding downstream 1679882 47648188 ~ 47648574 (+)
AMCG00004355 hyou1,LOC100380749 other upstream 1321278 44618185 ~ 44640732 (+)
G7329 fabp7,LOC108247051,LOC104945778 other upstream 3270901 42688779 ~ 42691109 (+)
AMCG00004304 NA other upstream 3745648 42210430 ~ 42216362 (+)
G7094 NA other upstream 4454779 41459576 ~ 41507231 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 5620775 40326410 ~ 40341235 (+)
G7999 NA other downstream 2178582 48146888 ~ 48147156 (+)
AMCG00004421 NA other downstream 2928811 48897117 ~ 49026355 (+)
G8099 NA other downstream 2964144 48932450 ~ 48934095 (+)
AMCG00004424 NA other downstream 3075284 49043590 ~ 49060055 (+)
AMCG00004425 zbtb44,LOC106580932,LOC106612543,LOC102781915 other downstream 3330430 49298736 ~ 49318835 (+)

Expression


Co-expression Network