AMCG00004382 (pknox2,LOC107686111,LOC106567647)


Basic Information

Item Value
gene id AMCG00004382
gene name pknox2,LOC107686111,LOC106567647
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 45874447 ~ 45890096 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004382
ATGGCCCAGGTGGGGTCACAAGAGCAGGGGATGAGCACGGTTCTCAGGAGATCAGCTCTAGACTTCAGGGGAGCAGAGCAGGGTCCATCGGCTCCCTCCCTGTCCTCTCGATTCATAGTTTACAGAAATGGCTCAGAGTGCATCACCTCGGCCAGCTTCGACGTCGACATCGAGAACTTCGTCCACCAGCAGGAGCAAGACCACAAGCCTTTCTTCAGCGAGGACCCCGAGCTCGACAACCTGATGGTCAAAGCGATCCAGGTCCTGCGTATCCACctgctggagctggagaaggTGAACGAGCTCTGCAAGGACTTCTGTAACCGCTACATCACCTGCCTCAAGACCAAGATGCACAGCGACAACCTGCTGAGGAACGACCTGGGCGGGCCCTACTCCCCCTCGCACACCTCCCTCAACCTGCAGCAGCTGCTTTCTGACCCCACTTCTTCTGCCTCCAAGCTCTTAACGCTGACCCCTAGGCCTTCCAGAGGAAATGAATGGGATCTGCTCCAGAGTTCCGCCGCATCCATGACGACGGTTTCCAGCTCCGTCAACCCACCCGGCATCGTGaatcgTCCCCGTGGGACCTTGTACCAGCCAGTGACCATGGTGACCTCACAAGGGCAGGTGCTGACCCAGGCATTGCCGCAGGGAACCATCCAAATTCAGAATGCACAGGTGAATCTGGACCTCTCCTCCCTCCTGGACAGTGATGACAAGAAGTCCAAGAACAAGCGGGGCGTCCTGCCCAAGCACGCCACCAACATCATGCGCTCCTGGCTCTTCCAGCATCTCATGCACCCTTACCCCACGGAGGACGAGAAACGGCAGATTGCAGCACAGACCAATCTAACCTTACTGCAGGTCAACAACTGGTTCATCAATGCACGCCGGCGGATCCTACAGCCCATGCTGGATGCCAGTAACCCAGACCCAGCACCCAAGGCCAAGAAGATGAAGTCTCAGCACAGGCCCACTCAGCGGTTCTGGCCCGACTCCATTGTGGCCGGAGTCCTGCAGCCCCATGGCGCTCACTCTGCCAACAACTCTGATGgcTCCCTGCCCATGGACAGCCTGCAGCCCCTGTCCTCAGATTCAGCCACTCTGGCAATGCAGCAGGCAATgctgggaggtgggggggatgaCTCCCTGGATGGCactgaagaagaggaagaggaggaggaggaggaagaggaagaggaggagatggaggaggaggaaggagagggagggaggcagctGCACACCACCAATGTGGGGGAGCTGGGCTTGGAGCACAGCGAGGCCCTGGAGTGA

Function

symbol description
pknox2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in forebrain; immature eye; and midbrain. Orthologous to human PKNOX2 (PBX/knotted 1 homeobox 2).

NR:

description
PREDICTED: homeobox protein PKNOX2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24891 PKNOX; homeobox protein PKNOX

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004382 True 1299 mRNA 0.59 11 45874447 45890096

Neighbor

gene id symbol gene type direction distance location
AMCG00004381 panx3,LOC106603665,LOC106567648,LOC107747045,LOC107686209,LOC107579026 coding downstream 6981 45861295 ~ 45867466 (-)
AMCG00004377 NA coding downstream 601448 45269184 ~ 45272999 (-)
AMCG00004376 NA coding downstream 687034 45175332 ~ 45187413 (-)
AMCG00004373 lim2.1,LOC105900331,LOC107579014 coding downstream 1070289 44746710 ~ 44804158 (-)
AMCG00004370 NA coding downstream 1133587 44738670 ~ 44740860 (-)
AMCG00004383 NA coding upstream 9173 45899269 ~ 45900449 (-)
AMCG00004385 NA coding upstream 121439 46011535 ~ 46046524 (-)
AMCG00004386 robo3,LOC106603666 coding upstream 172712 46062808 ~ 46085468 (-)
AMCG00004394 fez1,LOC107751387,LOC107691643 coding upstream 364727 46254823 ~ 46269418 (-)
AMCG00004393 acad8 coding upstream 385480 46275576 ~ 46284863 (-)
G7744 NA non-coding downstream 21634 45817998 ~ 45852813 (-)
G7714 NA non-coding downstream 730995 45139142 ~ 45143452 (-)
G7704 NA non-coding downstream 995228 44797506 ~ 44879219 (-)
G7684 NA non-coding downstream 1241165 44632752 ~ 44633282 (-)
G7609 NA non-coding downstream 1353629 44520175 ~ 44520818 (-)
G7820 NA non-coding upstream 297410 46187506 ~ 46189689 (-)
G7866 NA non-coding upstream 414010 46304106 ~ 46304371 (-)
G7867 NA non-coding upstream 414418 46304514 ~ 46304760 (-)
G7869 NA non-coding upstream 419267 46309363 ~ 46309582 (-)
G7870 NA non-coding upstream 422341 46312437 ~ 46312684 (-)
AMCG00004372 LOC108423781,LOC105921217 other downstream 1162396 44623190 ~ 44712051 (-)
AMCG00004364 NA other downstream 1312872 44540163 ~ 44561575 (-)
G7608 NA other downstream 1352234 44520914 ~ 44522213 (-)
AMCG00004336 NA other downstream 2424192 43402953 ~ 43450255 (-)
AMCG00004313 NA other downstream 3343441 42376726 ~ 42531006 (-)
G7868 NA other upstream 416830 46306926 ~ 46307319 (-)
G7882 LOC107575789 other upstream 578029 46468125 ~ 46468434 (-)
AMCG00004398 anc13,anapc13,LOC107756075,LOC107693524 other upstream 993196 46883292 ~ 46887754 (-)
AMCG00004403 cadm1a,LOC107548188,LOC107715321 other upstream 1158028 47048124 ~ 47306589 (-)
AMCG00004412 zbtb16,zbtb16a,LOC107703518 other upstream 2573085 48463181 ~ 48480715 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_14957226_14983228 PKNOX2 coding CI01000304 null 14956603 ~ 14983228 (-)