AMCG00004391 (v26bl,LOC108423787,LOC107751386,LOC107588734,LOC107691644,LOC105024202)


Basic Information

Item Value
gene id AMCG00004391
gene name v26bl,LOC108423787,LOC107751386,LOC107588734,LOC107691644,LOC105024202
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 46289169 ~ 46300366 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004391
GTCAGGGGGAAGCTGTGCGGAATTGCTACATACTTACCACTGGAAAGACACATAGAAACCTACAATTCAATTATTGGTACAATCAATTAAAATCGGGGCGGGAGAGACTACTAGGGAAGCGTAGCTCAAAAACGGGAAGATCCTCAATGCGTGATTGAATCAAGACACccaaaaagaaaagggagaaaaaaaagtaatatttccaGAGAAGAGTGCAGGGATGAGCTTCTTTAGTTTTGGCCAAAGTGCAGACATTGATATAGTGCTCAACGATGCAGAAACGAGAAAGAAAGTGGAGCACAAGACCGAAGACGGGAAGAAGGacaagtattttcttttctacGATGGCGAGACGGTTTCCGGCAAAGTCAACGTCACCCTGAAGAACCCGGGGAAGAGACTTGAGCACCAGGGCATCAAGATCGAGTTTATTGGGCAGATCGAGCTGTACTACGACAGAGGAAACCACCATGAGTTTGTGTCTCTTGTGAAGGACCTGGCGCGCCCCGGGGAGCTCACACAGTCCCAGACATTCGACTTTGAGTTCACACACGTGGAGAAGCCCTACGAGTCCTACACAGGCCAGAACGTCAAGCTACGGTACTTCCTTCGGGCGACAATCAGCCGGAGACTGAATGACATCAGCAAGGAAATGGACATCGTTGTGCACACGCTCAGTACCTACCCCGAGCTCAACTCCTCCATCAAGATGGAGGTGGGAATCGAGGACTGCCTGCACATTGAATTCGAGTACAACAAGTCAAAGTACCACCTAAAAGATGTCATAGTGGGGAAGATTTATTTCCTGCTGGTGCGGATCAAGATCAAGCACATGGAGATTGATATCATCAAGCGCGAGACAACGGGCACGGGGCCCAACGTGTACCACGAGAACGACACCATAGCGAAGTACGAGATCATGGACGGAGCCCCCGTGAGAGGAGAGTCCATCCCTATCAGGCTGTTCCTGGCTGGCTATGAGCTGACTCCCACCATGAGGGACATCAATAAGAAGTTCTCAGTGCGGTACTACCTCAACCTGGTCCTCATAGACGAGGAGGAGAGACGCTACTTCAAGCAGCAGGAGATTACCCTGTGGAGGAAAGGGGACATCGTGAGGAAGAGCATGTCACACCAGGCTGCCATCGCCTCCCAACGCTTCGAGGGTTCGGCCAGCAGTGAGAAGTCATTAGCCCAGGCCAAGGAGGAGGAGAACTAACTCCCGCCCCAGCGCCGGCACCAACCAGGCCCCATCCCGGacagagactgtgtgtgtgagtgatagTGCCactgtgagagtgagtgtgtgtgtgtgcgtgtgagtgagtaagtgtgtgtgtgtttgtgtgtctgcatggggtggtggggggggggggcaggggatgTATACCCCACCCCACCATCCCAAAACTAACCATCAACACTGGCTAGGGAACCTTCTCTTTTAATTGCTATACATTTAACAAAGGGATCAGAGAAAGGGAGTATAGTTCAGGGAGATGATATGTACTTTGGAACCCCATTGGTTAATAAGAAGAGATgcgtatatataaaatatgataagCTACATTTTGCTtgcatgtataatatatgtaaaGAATGTCCTCACAGAGCCAGTAGTTCCTGACATTCCTGTCAGTAGATTAGCAACAACCATACAACTGTGCAATCCAGATGTATGACATTGTTTCAGCTGTTTTCTGTATGTCAGTGCTTCTACTATGAAGGAGGAGGGAGTGTGAACAGCTTTAGATAACCCTGGCTGTAGACACACTGTAGGTGAGCGTAGAAAGAGGTTTTACACTCAGAGAAAGAGGTGTCAACACTCTGCATTTGCCACTCGAGAACACTACTCGCCACCCCAGCatttcatcttttaaaatgtatatctattgGATTGGAAGTACAGGTTAGGAGTTTTAAATCTTGCCTTCCTGAGATTTTGATGATTGCCAAATGTGAACAATCAATCAAAGTCTGATCCTCAAATTTACTGCCTCCTATAATGTAGGGTACCTGCTTACCCCCTTATTTAAATCATGAACCTATACGcaacacaatttaataaaaaaatgttaagtcACCTTATACAGCTCTGCTCCTGCTTCTGGGCACTTCCTTCCTCATTTGATTCCTTACAATGTTTACAGTTCACTCTGATTTCTCGTTGCCGTTGACAATACTATTCAgctttcttaaaacaaaacaaaagagaaaaaaaaagcaaaactagACTCAGGAACGGTAGAGTAGCTTTTGCCTTCAACTGCCAGACTTTACTGCTTCccggaggggaaaaaaataaaaataaataaaacaaacatgactgAGATTTCCTCTTTTGATATGAAAGGATACTGCACACAAAAGGGCTGGAAGCTACGAAAATAAACCATGCATGTATTTCCGTTAGCtctcacaaaacacacacgctGCTTCTCAGAGCGCATTGGCCTGCTTTATATCAATGTATCAATTTCACTGCATCCACGGTAAAGGACAGTAGCTCCGTCCAAGAACCACATCTAATATCGTAACCTCGTCTAGTTTAGTTTGGCTTGGGAAGCTTATGGGAAGACAGAGTTGCCTGCTCTGGGATGGAAAGGCAGAGCTGCACTTGTCCCCTTACTGTGTGTACAGTTGCAAATCAgacagcattttgtttgcacCTCCATTTGTGGCtcgcttttttatttgtttccaggGAAATCGAAGGCTGAGGTTAAAGCTGAGACGCCAGCATGTTTGTATCTGGACATGTCCACTTCACCTTGAGTTGAAAAAATAGTTCGCGTCTGTGCAGTTTTTGAGGTTGGGAGTAGGCCGGCACTTTCTCTGAGCTATGAAGGCTGGTGCTCAAAATACGCAATGAAAgcagtacattttgtatttagatggcaggaagagaagagaaatcgaggtgctgtgtgtgtggagtgggATCATATCCACACCTCccaggatttttattttcattaaatccaGCATGAAGGCCCATATTTTAAGGCATTGTATTTGCACTAAGGGCTCCAAAGTACATTCTATCACCTTCTTGAATttctataatttttttaacattaaccTTAAAAGAATTTGCttgcaagcaaaacaaaaaatcaactATCTCCGTATTGTCAAGTGACAtttttatagttaaaaaaaaaagaaaagggggagaGACACCCAATACAGACTAGACTTGAGGCCTCGTAAGTACTGAATCTACTTTTCCAATTGTTTTATGTCAGAACGCTACTAGTTTCATTTTGGAGCAAACCATGAAACAGGCCCTGAACACCCAGTGCTGTTTGACTTACATGAATATTACCCAAATTACCTAAATCATATTAATAGTAATGTGTTAATGTTCAGTGTTAAAATAGAAATCACACAAGTAATATCTACGGCAGCAGGTGGCCTGTTTTGACTTTCATTAACAGTTTGCCTAAACaaagcagtgtttaaaaaataaaggaaattgaCCAATGTAGTTGCAGAATCCCATATCCTTTGTTTAAACTCTGCCTTCCTTATAGTCCTTCCCACTATTCCCGTCTGTCTGCTGCAAAAGTAAGTCATTGTTTTAATAGAACATTAAAAGCCTGTAAGTTTCTTTCTTTGTAAGTCCTGTAacttttaataattgattttattttctttgttttgcatgtaCATTATTTGAAGTTGATGAATCCAACACATCTTTAAGGGAACAATATGTTTGTTTGAAAGCTGTTATCTTAACATTGTGCCTATTAGTGTAAGCATCTGCCAAAAACCATGTTTTGAGTTTAATGCCTAAAGTAAGTtcatactgttttttgtttgtttgtttttttgaccatttttgttttgtatgtttctgtatttttcaagACCCGAGCATCATTCCTTCGGATTCTAGTATTTCTAAGGTCTCTGCCaatatacaaaaagtaaaagtttgtttggggttttatttttattttttgtttttcaaatgcactcAAATCCTCCTGAAGGACTGAAAATAtcgaatgtgtttgtgtgtgtgtaagaagTTAAATAGGAGAAATATACTAAATGAACATGACCTCGGTCCTCTCCTATTTCTGTCCCATTATGTTAGTTTGCTGTGAAATATAGCAGGGTTTGAGGGGGGAAGGCCTGGGACATACAGGCATGCTTTTATCCAGCTGTTAGCAATGGTACATAAAGATAAAGGGGAAAGGTCATATTGTACTGCTTCAAGACACACTCAAGGCCCCAACCTCCGCCATTCAGTGACCACTCCTGTGACGCCCCGTCACACAGTTCGAAACTACAGCTCAGCTTTCCTGCACACCTCCGCCTTTTCAGACACCATTTCCAGTCTGCAGAGACGAGGATTCACAGATTTCTGTCGTCTTCGTTGTCCGAACTGAAAGAGTTAAGGGACTCAGTGGCCACTGAGGCTAGTTACTGGTCTACAACACAAAAAGTGCTACTAAAGCCGCATGCCCCATTAGGCACGGGTTACCCTAGCTTTTAACCTCATGTTGCCTTTTGTTAAATTCCAATGATCTTCCAGAATGAGACCTAAGCTACAGCTACAATTGCCTAGTACACATTTGTGAAGCAACAGCATCTGCGCACTGCTTTACTGGTAACTGCACAGGACTTCAATTCATCGCTACTCTGTGGACAAATTGTATTACCCTGTAGTGTACTGTTGGTCAAATGGTAAACTGCAACAAACTGGAAAGAAGCTGTGAACTCAagtattacatatatacacgtTATGCTAGCCATcagcaggaaaaataaagtcTACATGTGCAGTTCTGTACTTTTCACTGAATCTTATCTGTAATGACTGATTCTCTTTGCAAGAGGTTGAGTTTCAATCTTTAACATTATCATTGtgctaaaatgaaataaataacatgctgGCATTAAAATTTCATTAGAGAGATAACATTCCTTTTACAATTACAGtataattacataatatatatttacagagttGTAGGTATATATGATTAcaaatagatatttaaaaataaattcattataATAGATGTAAGGTTGTAAGGTACTGCTAGCCTGTTTGTGAAAGggaatttgtacattttcagcacaaaaaaaaaagagtatatGGTAATGCAAAGTATAGAtgttaatacaatatataagtacattgtttacttgtttattaaatagttgtattttgcgtttctgtattttaaatttgtttttaatcttatttctctgattaaaaaaaagaaagagcgATCTAAAAACCTTTTGTGGAGTCTAgacatattttcctttcaccctctggcttattttattttgctttcagctggaaaaaatatttgtgttgccATGACACAGTGTCTTACATAGGGTGTGCTCGTGCAAGTTGTATTGCTAAACACCGGCAAGTGGGCTTCAAGGGAACATTGCAAAGTCTCACAACGCAGCCGTCACTTAAAAGTTATGGGCAACCAATGGAAACTGGAAATACATGGTCATGCTTTCTTGTTCGCGCCAAGACTCCTGCAGCactattttaaagttaaattagtACAAGAAAAGAGGAGCTAGCTAGTTCTTTCCCCCACTGATTcaagtgacttttttttttttaacctgaatGGGTCCATGCGACACATTTTCACCATTTTGCACAAGCGGAGAAAAAAAGCCAGATCAACactttgtttctaaaataacagTAATCCCTGACACAAGAAAGAATGAATTTCACCAATTAAAGCACACCTGCTGCTACGAGGTCTGGGATCCTCACAGCACATATCACTTCACAGGGGTTTACTGACTTAAACTTCTACACAATAAGGGCAGTTCACCAAAACGATCCCAAACCGCACATGGTGACAGCAGTTACGGCCTTCCTAAACAATGCCAGAAACTGAC

Function

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 26B-like

GO:

id name namespace
GO:0007034 vacuolar transport biological_process
GO:0030904 retromer complex cellular_component

KEGG:

id description
K18466 VPS26; vacuolar protein sorting-associated protein 26

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004391 True 5901 mRNA 0.41 6 46289169 46300366

Neighbor

gene id symbol gene type direction distance location
AMCG00004393 acad8 coding downstream 4306 46275576 ~ 46284863 (-)
AMCG00004394 fez1,LOC107751387,LOC107691643 coding downstream 19751 46254823 ~ 46269418 (-)
AMCG00004386 robo3,LOC106603666 coding downstream 203701 46062808 ~ 46085468 (-)
AMCG00004385 NA coding downstream 242645 46011535 ~ 46046524 (-)
AMCG00004383 NA coding downstream 388720 45899269 ~ 45900449 (-)
AMCG00004392 NA coding upstream 18932 46319298 ~ 46336014 (-)
AMCG00004402 cadm1,LOC106603642 coding upstream 697642 46998008 ~ 47002451 (-)
AMCG00004410 NA coding upstream 2098451 48398817 ~ 48400277 (-)
AMCG00004411 NA coding upstream 2099960 48400326 ~ 48401535 (-)
AMCG00004409 NA coding upstream 2103814 48404180 ~ 48425709 (-)
G7820 NA non-coding downstream 99480 46187506 ~ 46189689 (-)
G7744 NA non-coding downstream 436356 45817998 ~ 45852813 (-)
G7714 NA non-coding downstream 1145717 45139142 ~ 45143452 (-)
G7704 NA non-coding downstream 1409950 44797506 ~ 44879219 (-)
G7684 NA non-coding downstream 1655887 44632752 ~ 44633282 (-)
G7866 NA non-coding upstream 3740 46304106 ~ 46304371 (-)
G7867 NA non-coding upstream 4148 46304514 ~ 46304760 (-)
G7869 NA non-coding upstream 8997 46309363 ~ 46309582 (-)
G7870 NA non-coding upstream 12071 46312437 ~ 46312684 (-)
G7871 NA non-coding upstream 12591 46312957 ~ 46313252 (-)
AMCG00004372 LOC108423781,LOC105921217 other downstream 1577118 44623190 ~ 44712051 (-)
AMCG00004364 NA other downstream 1727594 44540163 ~ 44561575 (-)
G7608 NA other downstream 1766956 44520914 ~ 44522213 (-)
AMCG00004336 NA other downstream 2838914 43402953 ~ 43450255 (-)
AMCG00004313 NA other downstream 3758163 42376726 ~ 42531006 (-)
G7868 NA other upstream 6560 46306926 ~ 46307319 (-)
G7882 LOC107575789 other upstream 167759 46468125 ~ 46468434 (-)
AMCG00004398 anc13,anapc13,LOC107756075,LOC107693524 other upstream 582926 46883292 ~ 46887754 (-)
AMCG00004403 cadm1a,LOC107548188,LOC107715321 other upstream 747758 47048124 ~ 47306589 (-)
AMCG00004412 zbtb16,zbtb16a,LOC107703518 other upstream 2162815 48463181 ~ 48480715 (-)

Expression


Co-expression Network