AMCG00004405


Basic Information

Item Value
gene id AMCG00004405
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 48324125 ~ 48330895 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004405
ATGTCTTTTTTGTCCCCAGTTACTGGTGAAGCAAAAGATATTGACTGGTTCTCGCCAAGCGGGGAGAAGATTGTTCCAAACAGACAGGATATCTCAGTGATTCGAAATGACGAGGCATCCTCCACCCTTACTATATACAACGCCAATATCGACAATGCCGGAATCTACAAGTGCATCGCAAAAAATGGAGAGAAGGAGTCCCAAGCCACCGTCAACGTGAAAATCTTCCAAAAGCTTACCTTCAAGAACGCCCCATCCCCCCAGGAGTTCAACGAAGGAGATGATGCAAACATAGTTTGTGATGTTGTCAGTTCGCCCCCGCCCACTATAATCTGGAAACACAAAAGCGTGAAAATTCAGGTTGAGAAAGATGttCGTTTCAAAGTCCTTAGCAACAACCACCTACAGATCCGAGGTATCAAAAAGACAGATGAGGGGGTATACACCTGTGAGGGCCGAATCATGGCCCGTGGAGAGATTGACTTCAGGAACATCAACGTTGTTATAAATGTTCTCCCCACCATCCGGACCAGACAGCTTGAACTGAATGCCACCGCAGACATCGGGCAGTCTGTGATGCTTGCCTGTGATGCCGATGGATACCCAGAGCCCACAGTCACCTGGGCGAGGAATAATATTGTCCTTGAAGATGGCGATAAGTACAGCTTTAATGAAGACGGCTCTGAGATGACGATAAAGGATGTGAAGAAACTGGATCAGGGAGATTATACGTGTATCGCAAAGAACAAGGCTGGGGAAAAGGACCAGGAGATCAGCCTGAATGTATTCGTGAAACCCAAAATTACCTTCTCGGAGAACAGATCTGCCACCGAGCTGGATGAGCAGGTCGTGCTGACCTGCGAAGCCACCGGAGACCCCATCCCCAACATCTTGTGGAGCTTCGGCCGACGCGTCTTCACCGAGGGAGAGCAGGTATGA

Function

GO: NA

KEGG:

id description
K06491 NCAM, CD56; neural cell adhesion molecule

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004405 True 939 mRNA 0.49 6 48324125 48330895

Neighbor

gene id symbol gene type direction distance location
AMCG00004399 sc5d,LOC107561054,LOC107715322,LOC107703513 coding upstream 1431186 46883862 ~ 46892939 (+)
AMCG00004400 NA coding upstream 1441213 46869325 ~ 46882912 (+)
AMCG00004401 arhgap32b,LOC107715324,LOC107703512 coding upstream 1526477 46793387 ~ 46797648 (+)
AMCG00004395 NA coding upstream 1621698 46688600 ~ 46702427 (+)
AMCG00004396 igsf9b coding upstream 1642157 46669974 ~ 46681968 (+)
AMCG00004406 NA coding downstream 19966 48350861 ~ 48355175 (+)
AMCG00004408 ncam1 coding downstream 42375 48373270 ~ 48392816 (+)
AMCG00004407 NA coding downstream 97521 48428416 ~ 48443267 (+)
AMCG00004404 LOC104954612 coding downstream 114833 48445728 ~ 48452697 (+)
AMCG00004414 NA coding downstream 282254 48613149 ~ 48624152 (+)
G7977 NA non-coding upstream 638244 47685520 ~ 47685881 (+)
G7974 NA non-coding upstream 675551 47648188 ~ 47648574 (+)
G7949 NA non-coding upstream 1326320 46992217 ~ 46997805 (+)
G7911 NA non-coding upstream 1601037 46721829 ~ 46723088 (+)
G7906 NA non-coding upstream 1606870 46715778 ~ 46717255 (+)
G8044 zbtb16 non-coding downstream 132286 48463181 ~ 48468811 (+)
G8083 NA non-coding downstream 516631 48847526 ~ 48848126 (+)
G8103 NA non-coding downstream 625072 48955967 ~ 48959831 (+)
G8111 NA non-coding downstream 693261 49024156 ~ 49029183 (+)
G8140 NA non-coding downstream 915593 49246488 ~ 49248034 (+)
G7999 NA other upstream 176969 48146888 ~ 48147156 (+)
AMCG00004380 NA other upstream 2355819 45962010 ~ 45968306 (+)
AMCG00004355 hyou1,LOC100380749 other upstream 3683393 44618185 ~ 44640732 (+)
G7329 fabp7,LOC108247051,LOC104945778 other upstream 5633016 42688779 ~ 42691109 (+)
AMCG00004304 NA other upstream 6107763 42210430 ~ 42216362 (+)
AMCG00004421 NA other downstream 566222 48897117 ~ 49026355 (+)
G8099 NA other downstream 601555 48932450 ~ 48934095 (+)
AMCG00004424 NA other downstream 712695 49043590 ~ 49060055 (+)
AMCG00004425 zbtb44,LOC106580932,LOC106612543,LOC102781915 other downstream 967841 49298736 ~ 49318835 (+)
AMCG00004442 NA other downstream 1475466 49806361 ~ 49814024 (+)

Expression


Co-expression Network