AMCG00004406


Basic Information

Item Value
gene id AMCG00004406
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 48350861 ~ 48355175 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004406
GCACCGAAGATACAAGGCTCTGTCACCGTGTACACGTGGGAGGGGAACCCTGCGAACATCACCTGTGAGGTCTTAGCCCACCCCAGCGCCTCTGTGGTTTGGTTCCGGGACGGCCAGCAGCTGCCCAGCTCCAACACAACCAACGTCAAGATCTACAACACCCCCTCCATCAGTCTGCTCGAGATTACACCCGAATCCCAGAATGACTTTGGAAGCTACAACTGCACAGCAACCAACAGCATTGCCACAGAGTCCAAGGAGTTCTTGCTAATTCAAGCAGaGGTTCCATCTATCCCAATTATCAATGATGTGGCGCCATACTCCAGCACAGCCCAGATAGACTTCGAAGAGCCGGACGCCAGTGGTGGAGTCCCCATTCTGAAGTACAAGGCTGAGTGGAGAATCCTGGGGCACACCGAATGGCTGCAGAGAGAATATGATGCCAGGGATGCATACGGAGAGAACGTGATCACCATCTCAGGCCTCAAACCCGAGACGGTGTACGAAGTCAAGATGTCTGCCATCAACGGCAAGGGGGAAGGTGACAGCTGCCAGCCCTACACGTTCAAGACAGAGCCAGTCCGTAAGTACAGCACCTCCTTTAAAGTCTCCCTTGCCCTGTTGCTGCCTCTGCCACCTAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004406 True 642 mRNA 0.55 4 48350861 48355175

Neighbor

gene id symbol gene type direction distance location
AMCG00004405 NA coding upstream 19966 48324125 ~ 48330895 (+)
AMCG00004399 sc5d,LOC107561054,LOC107715322,LOC107703513 coding upstream 1457922 46883862 ~ 46892939 (+)
AMCG00004400 NA coding upstream 1467949 46869325 ~ 46882912 (+)
AMCG00004401 arhgap32b,LOC107715324,LOC107703512 coding upstream 1553213 46793387 ~ 46797648 (+)
AMCG00004395 NA coding upstream 1648434 46688600 ~ 46702427 (+)
AMCG00004408 ncam1 coding downstream 18095 48373270 ~ 48392816 (+)
AMCG00004407 NA coding downstream 73241 48428416 ~ 48443267 (+)
AMCG00004404 LOC104954612 coding downstream 90553 48445728 ~ 48452697 (+)
AMCG00004414 NA coding downstream 257974 48613149 ~ 48624152 (+)
AMCG00004416 LOC105903796 coding downstream 273997 48629172 ~ 48643430 (+)
G7977 NA non-coding upstream 664980 47685520 ~ 47685881 (+)
G7974 NA non-coding upstream 702287 47648188 ~ 47648574 (+)
G7949 NA non-coding upstream 1353056 46992217 ~ 46997805 (+)
G7911 NA non-coding upstream 1627773 46721829 ~ 46723088 (+)
G7906 NA non-coding upstream 1633606 46715778 ~ 46717255 (+)
G8044 zbtb16 non-coding downstream 108006 48463181 ~ 48468811 (+)
G8083 NA non-coding downstream 492351 48847526 ~ 48848126 (+)
G8103 NA non-coding downstream 600792 48955967 ~ 48959831 (+)
G8111 NA non-coding downstream 668981 49024156 ~ 49029183 (+)
G8140 NA non-coding downstream 891313 49246488 ~ 49248034 (+)
G7999 NA other upstream 203705 48146888 ~ 48147156 (+)
AMCG00004380 NA other upstream 2382555 45962010 ~ 45968306 (+)
AMCG00004355 hyou1,LOC100380749 other upstream 3710129 44618185 ~ 44640732 (+)
G7329 fabp7,LOC108247051,LOC104945778 other upstream 5659752 42688779 ~ 42691109 (+)
AMCG00004304 NA other upstream 6134499 42210430 ~ 42216362 (+)
AMCG00004421 NA other downstream 541942 48897117 ~ 49026355 (+)
G8099 NA other downstream 577275 48932450 ~ 48934095 (+)
AMCG00004424 NA other downstream 688415 49043590 ~ 49060055 (+)
AMCG00004425 zbtb44,LOC106580932,LOC106612543,LOC102781915 other downstream 943561 49298736 ~ 49318835 (+)
AMCG00004442 NA other downstream 1451186 49806361 ~ 49814024 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000053_01403266_01462721 NCAM1B coding CI01000053 null 1403266 ~ 1464749 (+)