AMCG00004408 (ncam1)


Basic Information

Item Value
gene id AMCG00004408
gene name ncam1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 48373270 ~ 48392816 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004408
GAACCCAGCCCTCCTAAACTGGAAGGCAAGCTGGTGGACACAGGAAACATCCTGAAAGTCAACTGGATCAAGCAGGATGACGGTGGATCTCCCATCAGACACTATTTAGTGAGATACAAGGCGAAACAAGTATCTGAGTGGAAGCCAGAGATCAGACTACCAGCTGACAGTGACTACGCCATCCTCAGCGGCCTGGACTGGAACACGGAGTACGAGGTGTACGTGGTGGCCGAGAACCAGCAAGGAAAATCACAGCCCGGCATCTACGCCTTCACCACCTCCCCCGAGCCGACCGCCATCCCAGATTCAGTGGTCAGCGAATCCGGCCTGAGCACGGGAGCTATTGTGGGGATCCTGATCGTGGTGTTTGTCATCCTTTTGGTCGCCGTGGACATCACCTGCTACTTCCTGAACAAGTGTGGCCTGCTCATGTGCATCGCAGTCAACTTTTGCGGCAAGTCAGGACCCGGGGCCAAGAGCAAGGACATCGAGGAAGGAAAGGCTGCTTTTTCGAAAGACGAGTCTAAGGAGCCCATTGTGGAGGTGAGAACGGAGGAAGAGCGGACCCCCAACCACGATGGAGGGGGCCAGACAGAACCTAACGAGACCACCCCCTTGACTGAGCCTGAGAAGATCCCAGTAGATGATAAAAGTAAACCCGATGAAACTGATGTGAAGAAAACTCCGTCGGAAGTGAAGACGGTCCCCAACGAAGCCACGCAAACAAACGCCAACGAGAGCAAAGCATGATCGAGCAACCCGGCAAAAACACAGTCACAGACCTACAGAATTTCACATGAGcatcaaacaaaaaattaaaaaagatttcTTTCTTCagtgtcttttattattttcagaacaaaaaatgtgttctcCTGTTTGTGGATTTGTAGAAGGGAATCAGATCTTGTGCACTTGcaattttgttctgttctttgttttgttttgttttgttttgccactcatcacagcattattttaaacaggaaatacaaTACTGAAGACCCGCGCTTCACAACCTGTGCCACATGGCTGAAGGGCACTGAAAATGATTGAATTCATTCTCAGCAGTGCTTTCTATAGGATCTTTGCTTAAAGAAAGTTCAGCATTGGGTTGACAGTCTTTCACATAAATCAGTATCTCACAACAGTAGATGGGTTAGATACGTATAAGTATGGCAAAATTCAGCGTTATAGAGGAACAATGCTTTTGTGTTGTGCTCAAAGTCCGTCACTTTCATCCGAAtactcattttttatttgtaatgatcaAAATATGAAGGATTGAATAAAATtagacacaaacatacacaactTTTACAGTATTCATTATTTCATAACTTCATATTTGCCAATTTTTCTTTCCAATGTTTATGGGTTTTGGGTACAtttcttttaaccttttttctCGTGTTTAAAAATTGTGTAAAAGTAACTGCCTTTTATTTgactatttttgtattgttatgttTCTGGGGTTAGTATTATAGCATAGATCATTAGCATGCTTGCTTTGCAaagggatttttcttttcttttttttttctttctcaaatattatgtttacactgttttcttctctgctttCTCCCATGTATGAAACACCATGCTTGTTCTTAtgttaacaacaaacaaaacaaagactagTTATTCTGTACTGAGCTCATAAAGAAGAAAGGAGTGAATGTGCGGGAGTTAGAATTTAgagtttacagaataaaaaaaaacactaaagtcACTTCAATAAATGAAGATAAGTCAATTTGGCTGCATTTTGACAGATGTGGCAAAACGTTGTCCATCTCTCCGTTTCGTGTCTAAGGTGATACATTTTGCCTGTTCTTTAAAAGCAACTAGTGAAAGCAAAGGGCTGGATAAAATGGagtatgtatgtaatttaaCCCAACTCAAATATCTAGGAGAGACTGAGGCAACAGCTTTGGTTGGGTTGGGGGGGCATAAAATAGATGATCAGATGAAAAGGAATAGGGAATAGAGGAGTGAATGCATCTTGTTCTACCACAGTGCTGTAATAAAGCACAGTATTGGTGCAGTGACACCTTCAAGGTATTGGGCTCAGTTACTGTTAATGACAGTAGCCTTGCTGTCAGTAAGATGCAGGTAGAATCCAACACCAAGACGGGCTTTAAACATTTCAGCGAATCGCACGCAAACCCTGACACAACCGAAGGTTTACCATAAGGGTCACAATAAATCAttgttgattttagtttttttgttgttgttgttgttgttattgttttttgttttattaatttcacattatttttttaaagtacagtatatataaaacaaaaatcagtgcCCATCGTAGACTTGCGTAAGTGTCCAGattttttcagctttttatcTGCAATTGTGTATCTAAAGATGTGATCTGAAAAAaagtctgttgttttttgttgttttatttgcctttttatacatatgaaaataaaaatacctgaaggaattaattatttaaatcataatactCTGGTGTGGATTTTGCATTGCAAAGTCTAAATCATAGACCAGCCCTTTTTTGTACAGTACACCtctgaaaacttttttttcccattctttGAACTGCAAGCTTGTGCACTGTGAATGCGTGAATATCCTAgtgtgaataaaatgtgttctttgtcatagtatttaaaaaaaaagtaaaaaaaaaaaaaaaactgcatagTTTGGTTGTGAAAGGTTTAGCAAatagtacagaaaaaaaaagaaaatttgTTCCTAAAGAAACAATGACAacgaaaacaataaaaagggggaaacaacaacaaaaaatgcctTCAGAAATGTTCTTATTATGGCATGCAATCCACTTTCTTCAGTGTTTGCCTGTAATGCAGAGACTGATGGTTCAAGACTGCAGCCCAACTTCCTGGTACACTGACCACTCTTGGGGCCTTTTTcacttcagtgtctgtgtgtgcagtcaAGGTAACGATAACTGATGGTGTCTCTAGTTTGTAAGTTCAAACTGTGAAAATACTGGTCTTGTCATTTTGCtcaatgtgttttttgcatATACTAGGCTCTGGGGGTGAAAATGGAGGTAATTGACTACTGTGcttgttcttttcattttaagggGCTTGATGCTTGATGCTTAATGCCTACGCATAGCGCGGGTGGAAGATTTTTTGCGAGCCTTCATGCAGCACAACATATTTCCGAGGTCTAGAGTGATCATTCTCGACTGGCTTGGAAGTTGACATCATTTTCAGAAGCCTCCGGTGTAAAGTACATCCGTAGGCCTGAGCTGAAAGACACTCGGAGCATCTCTGAGTTACACCACCAGGCAGACTGGTGAGCTGCTCTAGTTACTCTATTTAACTTTCTCTGTCTGAATTGATTGTCTGGCGGCTACATGAATCATATCCCCCTGGGGTGCTGCAGAATTAGGAATTATAGCACAGCATCTAAGAAATTAAGATTTGTGCTGGAATAAGTGCACAAGCATGGTCCACCTCAGACTGGATTAAGATCTTTTTCATGTAGGGACAAGGTATTTCATATTAGAGAAAAAGCAGAACCACTTCAGGCTCATGTTGTTGGTCAGTCTTTTCTGGGTGCTCCTGCTGTGGTCTTTCATGTACTTTCTTATAAATGAGGTATCAAGCACTTGTGCTTGGCAGCAGTATGAAAATGGACGGAAGTGGCAAGCTCTTCTGacattatttctttttatatgtTTCCATGCCATGCCTAGTAAtgcagaaatatacatatatatatacatatatatatatgtatgtgtttgtgtgtgtgtatgtgtacatacTTATATACTACATATAtgaatgtacacacacacttcatttttttttctattcataaAAGCTGGATGTTGTTTTGTGctttcacattttttgttcaaCTGCCGTTAATATGGGACCAAGTTTTTGTGACTTTACATATGCCTTTGAACTAACGTGTCGTGCCATGAAACAATTTGTTCAGAAACAAAATTGAAGTCAAtgaattaaaaaggaaacaaaaaagctaAACTTCTTATAATGGCAAGCCAAATGTTATTCTAACAATTAGTCataaaaatctttttttaatgtataaatcaaCAGAAAAGGACAGGTGCCTCGTCCCTTTAAGAGGACCATGTCTTGTTCCCCAGAAACCTCCATTGTCATTCCTACCCAGCATTCCCTGCTTTTGGGGCCTTCTATCTTGTATACAACTTTTTACTGAGTGAAACATTGGTACCACCTTTCTTTCCACTGTCACTGG

Function

symbol description
ncam1 Predicted to enable virus receptor activity. Predicted to be involved in commissural neuron axon guidance; modulation of chemical synaptic transmission; and regulation of semaphorin-plexin signaling pathway. Predicted to act upstream of or within several processes, including homotypic cell-cell adhesion; positive regulation of calcium-mediated signaling; and regulation of exocyst assembly. Located in cytosol and external side of plasma membrane. Implicated in bipolar disorder; middle cerebral artery infarction; and pancreatic cancer. Biomarker of several diseases, including acute promyelocytic leukemia; brain glioblastoma multiforme; cholangiocarcinoma; insulinoma; and ovarian serous carcinoma.

NR:

description
PREDICTED: neural cell adhesion molecule 1 isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004408 True 4266 mRNA 0.39 5 48373270 48392816

Neighbor

gene id symbol gene type direction distance location
AMCG00004406 NA coding upstream 18095 48350861 ~ 48355175 (+)
AMCG00004405 NA coding upstream 42375 48324125 ~ 48330895 (+)
AMCG00004399 sc5d,LOC107561054,LOC107715322,LOC107703513 coding upstream 1480331 46883862 ~ 46892939 (+)
AMCG00004400 NA coding upstream 1490358 46869325 ~ 46882912 (+)
AMCG00004401 arhgap32b,LOC107715324,LOC107703512 coding upstream 1575622 46793387 ~ 46797648 (+)
AMCG00004407 NA coding downstream 35600 48428416 ~ 48443267 (+)
AMCG00004404 LOC104954612 coding downstream 52912 48445728 ~ 48452697 (+)
AMCG00004414 NA coding downstream 220333 48613149 ~ 48624152 (+)
AMCG00004416 LOC105903796 coding downstream 236356 48629172 ~ 48643430 (+)
AMCG00004415 NA coding downstream 437722 48830538 ~ 48846603 (+)
G7977 NA non-coding upstream 687389 47685520 ~ 47685881 (+)
G7974 NA non-coding upstream 724696 47648188 ~ 47648574 (+)
G7949 NA non-coding upstream 1375465 46992217 ~ 46997805 (+)
G7911 NA non-coding upstream 1650182 46721829 ~ 46723088 (+)
G7906 NA non-coding upstream 1656015 46715778 ~ 46717255 (+)
G8044 zbtb16 non-coding downstream 70365 48463181 ~ 48468811 (+)
G8083 NA non-coding downstream 454710 48847526 ~ 48848126 (+)
G8103 NA non-coding downstream 563151 48955967 ~ 48959831 (+)
G8111 NA non-coding downstream 631340 49024156 ~ 49029183 (+)
G8140 NA non-coding downstream 853672 49246488 ~ 49248034 (+)
G7999 NA other upstream 226114 48146888 ~ 48147156 (+)
AMCG00004380 NA other upstream 2404964 45962010 ~ 45968306 (+)
AMCG00004355 hyou1,LOC100380749 other upstream 3732538 44618185 ~ 44640732 (+)
G7329 fabp7,LOC108247051,LOC104945778 other upstream 5682161 42688779 ~ 42691109 (+)
AMCG00004304 NA other upstream 6156908 42210430 ~ 42216362 (+)
AMCG00004421 NA other downstream 504301 48897117 ~ 49026355 (+)
G8099 NA other downstream 539634 48932450 ~ 48934095 (+)
AMCG00004424 NA other downstream 650774 49043590 ~ 49060055 (+)
AMCG00004425 zbtb44,LOC106580932,LOC106612543,LOC102781915 other downstream 905920 49298736 ~ 49318835 (+)
AMCG00004442 NA other downstream 1413545 49806361 ~ 49814024 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G872123 NA non-coding NC_048574.1 CM023228.2 25326555 ~ 25379449 (-)
striped catfish (Pangasianodon hypophthalmus) G136190 NA non-coding NC_047602.1 CM018548.1 20891955 ~ 20892408 (-)
bowfin (Amia calva) G128255 NA non-coding CM030137.1 CM030137.1 13357491 ~ 13382644 (+)
mexican tetra (Astyanax mexicanus) G119103 NA unknown NC_035910.1 CM008313.1 3428322 ~ 3431807 (-)