AMCG00004417


Basic Information

Item Value
gene id AMCG00004417
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 48910997 ~ 48930564 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004417
ACAGAACGTAAATCCGGTCATTTtcaagctttttaaaattactgtCTTTAGCTGTGTAGTTTTATATTTGAGAACACTTGATCACACTCTGGAAACAgtatggaaaatgaaaaacaagatcTTGAAAGGTTTCTGAAGAATGTTGATGAGATAAgTGAGCTGGTTAAAGAGCTGAACTCTTCTGACCCTGAGTGTCAAAAGAAGGCTTCTGAAAAAGCAGACCAACTCATCTGTTGTTTGAAGGAGAATGAGGAAAGCGATGAATCGTGCAACACCAGACTCAACCGGACAGTGATTAACACCAATCCACCACAGGCTGTGACAGGCCCTCAAggaagaCAGAATGACTCCGAGATTAGCACAGaaaattTCATGAAGATTTTAGAAAAGGATGCGGAAGAcagaaggaagaggagaaagGAAAATGAGAAATTAGCAAATGCCCTCAAAGAAATGGGGAATGAGGCATTTGCAAAAGGTGACTATGAGACGGCCGTTCTACGGTACAGTGAAGGGCTCGAGAAAGTGCGTGACATGCAGGTCCTCTACACCAACAGGGCACAGGCCTATATTAAGCTGATGAAATATCAAGAGGCTATCGGTGACTGTGACTGGGCACTAAGGTGCAATGAGAAATGCATAAAGGCGTACATTCACATGGGACGGGCTCACCTGGCACTGCACAATTACAAGGAGGCTCGAAATTGTTATCATAGGATACTGGACATCGAGccaaaaagggaaaacataGTGCACGAGTATTTGAACCAAGTTGatttagaagaaaagaaagccCTTCAGGAACAGAAAGCACGGGCGGAGTTTGAACAAGGCAAGGAGAATGCCACCTCGGTGCTGGAACTGCTGCATAAACTGGGCAAGCCAGAGCAGATCAGCCTGTACTACACAGGGGGCATTTGCCTGCTGTCAGAAGCAATTAAAGACGGCACTGAGCAGACATTATTCCGAATACACAATGGCTTCAGTATCATCAACAGCAATCCCATTGTAAGAAGGAGTCTTTCACTGAAACAACCAGACCGATTTAATGATGACTTGTGCATTTCTGTACTCAATCTCTGGAAGGTGATTTGTGAGGGGAATGaggaaaaccaaaaaatattgaTACACTCTTCTGGCATCAGTGAGAATTTTGTCAACTTATTAGCATCAGAAACACCTGGGATACAGATGACATGCATACGTTTACTTTGCATTTACTCACAGACCCAATATGGCAGGAGTCTGGTCCTTCAAATCCTGGATCTGGACAAATTAGtggaaaacctgctgaagttcataaataataaagacatcACTGCCAAAACTGCTGTAGGTATTTTGGATCGCTTCGCTGGTGAACAAAAgtttAGAGTTCATTTCCAAGGCAACTTCACCACAACGTTTCTGCCTCCTTTCACAAGTCTTCtgAACAATATGCCCTCTGTGGACCTGACTGTGCTTCCTCCATGCATTTCAATGATGGCCAGCATGACAGGAGATGACATCATTCGAAAAAAGACAGCCAGTTGCCAGGAATGCTGGGAAGCCTTTCTCACCGCTATGGATGCCTGCGCTGTCTCTGATCAATCCTCTGAGGCCCAGGatgttttgtgtgctttgttgGGATTCATGATAAACATCTCCAAGGACCACACGCTAGCAATTGagAGAACCACGGGTCTTCTGAGCAACATCCTCCCACACTCTCATGCAGCTACAGAGGAGGCTGTTCAGAAAGGAATTGTGAAGAAAATGATCACATTTCTGAAGGCAGGAGGGCAGACAACCACTCATTTCTCAATCAAGACCCTGGCGATCTGCACCACAGCCAGCATACAAGCTCGGGAGGAACTTGTGAAGCTGGATAAGAAGCTTTGCACATTAGTTAAACTGCTGCGTACGGGTGACGAGGTGGTGGTTGGGAATGCGGCTCTCAGTCTAGGTCAGTGCCTGGAGGTACCAGGGGCCGCCTCCTCTCTTCTGGGCTCTGACATCGTCATGCTCTTGCTTAAGCATGCTGGAGGGGATGCCAGCAAGACCACAGTTCAACGAAATACCGCCATCGCCCTCGGCAGACTCTGCACAGTGGAACCCGGgcaTCTGATCGAGCTACGAAAACTGCACGGTTTAGAAATACTCGATTCCTGCATGAAGTACATTAAATGAAGGCCAGTTTGTTGGTCTTCTGAAAGGATTTTGTCCTGGATGTTTgttcaatacaaatgtgtttattacatCTGTGAATTCGACAGTTAAAGCTGCTGTTCAGAAGTTGTTCAAAATGTTATTCagtattttgcttatttttcccctctcttgTAGGTCAGCTTTAATGTTGATTTTTACTGTAACTAATTATCCATCGCccaaggaaacaaaatgtgccTCAGTCTGTGACGTCTTCCTTTCAACTTATGCAATAAACAGCTCTGTTTGCATAAATTACTACTTCTGTCAATGCTTTGTGTACTTTGTAAGCAAGAAGGCATACTTTTCACCTAAGG

Function

GO: NA

KEGG:

id description
K24652 TTC12; tetratricopeptide repeat protein 12

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004417 True 2507 mRNA 0.44 20 48910997 48930564

Neighbor

gene id symbol gene type direction distance location
AMCG00004418 NA coding downstream 15996 48889077 ~ 48895001 (-)
AMCG00004413 NA coding downstream 326596 48583139 ~ 48584401 (-)
AMCG00004409 NA coding downstream 485288 48404180 ~ 48425709 (-)
AMCG00004411 NA coding downstream 509462 48400326 ~ 48401535 (-)
AMCG00004410 NA coding downstream 510720 48398817 ~ 48400277 (-)
AMCG00004419 NA coding upstream 1901 48932465 ~ 48934416 (-)
AMCG00004423 LOC106580930,LOC106612539 coding upstream 319672 49250236 ~ 49259701 (-)
AMCG00004432 NA coding upstream 507393 49437957 ~ 49439719 (-)
AMCG00004433 NA coding upstream 520264 49450828 ~ 49461400 (-)
AMCG00004435 NA coding upstream 651559 49582123 ~ 49588829 (-)
G7979 NA non-coding downstream 1224430 47685925 ~ 47686567 (-)
G7978 NA non-coding downstream 1225123 47685631 ~ 47685874 (-)
G7975 NA non-coding downstream 1262415 47648171 ~ 47648582 (-)
G7936 sc5d non-coding downstream 2017967 46890942 ~ 46893030 (-)
G7935 NA non-coding downstream 2020864 46889647 ~ 46890133 (-)
G8116 NA non-coding upstream 24812 48955376 ~ 48956463 (-)
G8118 NA non-coding upstream 47060 48977624 ~ 49048073 (-)
G8133 NA non-coding upstream 171144 49101708 ~ 49101912 (-)
G8281 NA non-coding upstream 880814 49811378 ~ 49814054 (-)
G8286 NA non-coding upstream 914018 49844582 ~ 49858455 (-)
AMCG00004412 zbtb16,zbtb16a,LOC107703518 other downstream 430282 48463181 ~ 48480715 (-)
AMCG00004403 cadm1a,LOC107548188,LOC107715321 other downstream 1604408 47048124 ~ 47306589 (-)
AMCG00004398 anc13,anapc13,LOC107756075,LOC107693524 other downstream 2023243 46883292 ~ 46887754 (-)
G7882 LOC107575789 other downstream 2442563 46468125 ~ 46468434 (-)
G7868 NA other downstream 2603678 46306926 ~ 46307319 (-)
AMCG00004420 NA other upstream 9460 48940024 ~ 48985311 (-)
AMCG00004429 NA other upstream 480643 49411207 ~ 49425182 (-)
G8310 NA other upstream 1018297 49948861 ~ 49949592 (-)
G8340 NA other upstream 1074568 50005132 ~ 50008694 (-)
AMCG00004457 rnf26 other upstream 1135834 50066398 ~ 50071941 (-)

Expression


Co-expression Network